| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,466,238 | A→T | 8.2% | V212V (GTT→GTA) | fusA ← | protein chain elongation factor EF‑G, GTP‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,466,238 | 0 | A | T | 8.2% | 665.2 / 34.7 | 218 | V212V (GTT→GTA) | fusA | protein chain elongation factor EF‑G, GTP‑binding |
| Reads supporting (aligned to +/- strand): ref base A (111/89); new base T (8/10); total (119/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 225 total aligned reads displayed.
GATTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTC > CP009273/3466091‑3466382 | gatTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCa < 2:3542592/148‑1 (MQ=255) atTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCaa < 2:2213043/148‑1 (MQ=255) atTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCaa > 1:3547337/1‑148 (MQ=255) atTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTGAAGTCAGTTCGGACCAACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCaa > 1:3497392/1‑148 (MQ=255) tttCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAAc > 1:1480662/1‑148 (MQ=255) ttCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAAcc < 1:1456816/148‑1 (MQ=255) tCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCa < 2:749651/148‑1 (MQ=255) ttgttCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGt > 1:2022396/1‑148 (MQ=255) tgttCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTc < 2:2936993/148‑1 (MQ=255) gttCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCt < 2:918265/148‑1 (MQ=255) gttCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCt < 2:1678224/148‑1 (MQ=255) gAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCgg < 2:1809814/148‑1 (MQ=255) aaCGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCggg > 2:3465890/1‑148 (MQ=255) aaCGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCggg > 2:3189756/1‑148 (MQ=255) cgcTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGatat > 2:1621055/1‑148 (MQ=255) cTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCt < 1:2296931/148‑1 (MQ=255) cTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCt < 1:3310886/148‑1 (MQ=255) cTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCt < 1:1542782/148‑1 (MQ=255) cTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCt < 1:589017/148‑1 (MQ=255) ttGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTa > 2:2478253/1‑148 (MQ=255) tGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTAc > 2:3232961/1‑148 (MQ=255) ttCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGccc < 2:2621168/148‑1 (MQ=255) tCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCt < 1:2752848/148‑1 (MQ=255) tCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCt < 1:2358693/148‑1 (MQ=255) cTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTg < 1:1909234/148‑1 (MQ=255) cTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTg < 1:2997057/148‑1 (MQ=255) cTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTg > 2:686478/1‑148 (MQ=255) tGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTgg > 1:2896829/1‑148 (MQ=255) tGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTgg > 2:1847709/1‑148 (MQ=255) tGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTgg > 2:2835279/1‑148 (MQ=255) tcagtTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGcgtc > 2:1472006/1‑148 (MQ=255) agtTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGcgtcgt > 2:1293157/1‑148 (MQ=255) ttcttcACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTc < 1:682212/148‑1 (MQ=255) ttcttcACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTc < 2:2127144/148‑1 (MQ=255) ttcttcACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTc < 2:2130907/148‑1 (MQ=255) cttcACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCa > 2:309435/1‑148 (MQ=255) tcAACACCCAGTTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTAGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGt < 1:2985231/148‑1 (MQ=255) accaccCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTg < 2:1252943/148‑1 (MQ=255) accaccCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTg < 2:61103/148‑1 (MQ=255) accCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCggg < 2:495590/97‑1 (MQ=255) accCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCggg > 1:2766030/1‑97 (MQ=255) ccAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGc < 1:2473520/148‑1 (MQ=255) gTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTc > 1:3273488/1‑148 (MQ=255) tATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCa > 1:469902/1‑148 (MQ=255) tATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCa > 2:904587/1‑148 (MQ=255) aTTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTACAGTTGATAGCTTTCAt > 1:358596/1‑148 (MQ=255) tttttCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCAtt < 1:242972/148‑1 (MQ=255) tttttCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCAtt < 2:1407008/148‑1 (MQ=255) ccATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCAc < 1:3473962/148‑1 (MQ=255) tCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTATCATTTTCACCAg > 2:1966703/1‑148 (MQ=255) cAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAgg > 1:837318/1‑148 (MQ=255) cAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAgg < 1:1105072/148‑1 (MQ=255) cAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAgg > 2:386361/1‑148 (MQ=255) cAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAgg < 2:2792058/148‑1 (MQ=255) gCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTc > 2:2456978/1‑148 (MQ=255) gCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTc > 1:1293490/1‑148 (MQ=255) ctctTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTca > 1:1771513/1‑148 (MQ=255) ctctTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTca > 2:2895359/1‑148 (MQ=255) ttCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTcaaca < 1:1679331/148‑1 (MQ=255) ttCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTcaaca < 2:1018027/148‑1 (MQ=255) ttCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTcaaca < 1:517503/148‑1 (MQ=255) tCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTcaacaa > 2:916782/1‑148 (MQ=255) tCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTcaacaa > 1:474336/1‑148 (MQ=255) tCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTcaacaa > 1:3226694/1‑148 (MQ=255) tCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCAACAGGTcaacaa > 1:441495/1‑148 (MQ=255) aGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAacaaca < 2:1119055/148‑1 (MQ=255) aGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAacaaca < 1:931986/148‑1 (MQ=255) aaGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACAcc > 1:192652/1‑148 (MQ=255) aaGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACAcc > 2:2880704/1‑148 (MQ=255) aGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCg > 2:326346/1‑148 (MQ=255) ttCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTg > 1:828294/1‑148 (MQ=255) tCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGa > 2:847363/1‑148 (MQ=255) cAGGTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGaa < 2:2354121/148‑1 (MQ=255) cAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGaa < 2:1480662/148‑1 (MQ=255) cAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGaa > 2:591400/1‑148 (MQ=255) aTTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTGCCAGGTGATAGATTTAATTTTAAACAGGTCCACACCACCCGTGAAATGttcttc > 1:602587/1‑148 (MQ=255) aTCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCCTCAACACCGGTGAAGTGTTCTTCAGCAc > 2:3410326/1‑148 (MQ=255) aTCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCAc > 2:857751/1‑148 (MQ=255) tCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCAcc < 1:2567487/148‑1 (MQ=255) ggTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAAt < 1:1047878/148‑1 (MQ=255) tCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAAAAACACCCGTGAAATGTTCTTAATCACCAATCGc > 1:1247596/1‑148 (MQ=255) cTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGcc < 1:2675437/148‑1 (MQ=255) gTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGc < 1:2478253/148‑1 (MQ=255) ccATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTGCGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGc < 2:736460/148‑1 (MQ=255) aTTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAg < 2:269996/148‑1 (MQ=255) aTTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAg < 1:852629/148‑1 (MQ=255) ttCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGc > 1:1932346/1‑148 (MQ=255) ttCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGc > 1:1732344/1‑148 (MQ=255) ttCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGGTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGc > 1:3430066/1‑148 (MQ=255) tCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCg > 2:1069684/1‑148 (MQ=255) gtgaGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGa < 2:2439774/145‑1 (MQ=255) gTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGa > 1:298628/1‑148 (MQ=255) ttAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGaa < 2:1079219/148‑1 (MQ=255) ttAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGaa > 2:960858/1‑148 (MQ=255) tAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAAc > 1:1360449/1‑148 (MQ=255) gCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCg > 2:1706492/1‑148 (MQ=255) cAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCggg < 1:3232961/148‑1 (MQ=255) aGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGt < 1:550229/148‑1 (MQ=255) gTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTAACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGtt > 2:1353527/1‑148 (MQ=255) ttCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTc > 2:1287659/1‑148 (MQ=255) | GATTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTC > CP009273/3466091‑3466382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |