| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,498,239 | A→C | 9.6% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,498,239 | 0 | A | C | 9.6% | 295.5 / 12.6 | 134 | intergenic (+97/+55) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Reads supporting (aligned to +/- strand): ref base A (31/87); new base C (14/2); total (45/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.37e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 138 total aligned reads displayed.
TCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATT > CP009273/3498093‑3498385 | tctGCCTCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCaa < 2:1918889/148‑1 (MQ=255) ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCaaa < 1:2222457/148‑1 (MQ=255) ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCaaa < 1:753549/148‑1 (MQ=255) gcgcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCGAACCCAC‑TC‑CCCACACGGGc > 2:2508661/1‑148 (MQ=39) cgcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCGCCCCCAAACCCCCAAC‑CCCAACggggg > 1:1746741/1‑147 (MQ=38) cgcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCg < 2:3473460/148‑1 (MQ=255) cAATCTCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCAAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAgg < 1:3556319/148‑1 (MQ=255) aaTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAggg < 2:2346205/148‑1 (MQ=255) aaTAGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAggg < 2:3031085/148‑1 (MQ=255) aTCGCATCACCTTAACTATTTATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCTCATCCGGCGATGCTGGCGAGTTTAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TA‑CCCAAAGGGGCGAgggg < 1:867195/148‑1 (MQ=39) tCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCGCACCCCAACCCCC‑ACACCCAACGgggggggggg > 1:1482997/1‑148 (MQ=37) tCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGGAGGCCGGGTCCGATGCGGCAGCATCGCATCCGGCGATGCTGGCGCGTTGACGTGTACATCCCGTCCGGTCGCCGGCCCCGATCCCGC‑TC‑CCCCTCGGGGCggggggg > 2:3522056/1‑147 (MQ=255) cGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTGCCCCCCCCCCAAACCAC‑AC‑CCCCAACGGGCgggggggc > 1:1186831/1‑146 (MQ=37) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCTTCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCg < 1:233897/148‑1 (MQ=255) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTAAATCCCGTACGGTGGCCGCACCCCAAACCAC‑TA‑CCCCAAACGGCGCGGGGGccc > 1:1868258/1‑147 (MQ=25) cACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTc < 1:1730021/148‑1 (MQ=255) cACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCGCACCCAAACCCAA‑AC‑CCCCCAGGGGCGCGGGGCCCggtg > 2:3324195/1‑145 (MQ=37) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCACACCCCAACCCAC‑TA‑CCCAAACGGGGGCGGGGGCCGGTCACGACggc > 2:3056291/1‑147 (MQ=37) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCTAACCCCAACCCAC‑TC‑CCCAAAGGGGCGAGGGGAGCGGTCAGTAAGGa > 2:1279500/1‑148 (MQ=38) aTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAt < 1:524882/148‑1 (MQ=255) ttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAtt < 1:1748516/148‑1 (MQ=255) ttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAtt < 1:2895248/148‑1 (MQ=255) tGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCACACCCAAAACCGC‑TC‑CCCCAAGGGGCGCGGGGCCCCGGCACTACGGAAatt > 2:3023392/1‑148 (MQ=37) tactaaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGc < 2:370092/145‑1 (MQ=255) taataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGc < 1:1979530/148‑1 (MQ=255) aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACAGTTCAGTACGGAATTTAGCt < 1:1820619/148‑1 (MQ=255) aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACAGTTCAGTACGGAATTTAGCt < 1:1820625/148‑1 (MQ=255) ataaAAGACCATAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGTCGCGTTGAATTTTACATCACGTACGTTCCCCTCACCCTAACCCTC‑TG‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGTAtttttgtt < 2:1688588/148‑6 (MQ=38) taaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTg < 2:1323147/148‑1 (MQ=255) aCAGTAACCGTACGCCGGATAAGAGGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTACCCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTg < 2:799367/148‑1 (MQ=255) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGc < 1:1465565/148‑1 (MQ=255) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGc < 1:492435/148‑1 (MQ=255) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCAC‑TC‑CCCCAAGGGGCGAGGGGACCGTTCAGTACGGAAATTAGCTTGAAGGGGc > 2:2086853/1‑148 (MQ=38) aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCt < 1:936113/148‑1 (MQ=255) aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 1:3156087/148‑1 (MQ=255) ggCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAtt < 1:2090998/148‑1 (MQ=255) aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCACACCCGAAACCAC‑AC‑CCCAAAGGGGCGCGGGGACCGTTCACTAACGAAATTATCTTTTCGGTGCTAAACAGCCTTAAAAAc > 2:2545886/1‑148 (MQ=255) aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCCAAGGGGCGAGGGGACCGGTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATAc > 2:2352335/1‑148 (MQ=255) aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAACCCAC‑TC‑CCCACAGGGGCGAGGGGGCCGGTCAGGACGGAAATTAGCTTGAAGGTGCTATACCTCATTAAATAc > 2:2353301/1‑148 (MQ=255) aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTACCCACACCCACAACCAC‑AC‑CCCCAAGGGGGGGGGGGGCCGGTCAGTAACGCAATTATGTTGAAGGGGGTATACCGCaataaataa > 2:54019/1‑147 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACt < 1:982670/148‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTgg < 2:2825732/148‑1 (MQ=255) gATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCACACCCAAAACCAC‑TC‑CCCCAAAGGGGGAGGGGCCCGGTCCGTAACGAATTTAGCTTTACGGTGCGATACACCCATAAAAACTGGc > 2:3503393/1‑148 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTCACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCa < 2:1756516/148‑1 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCa < 1:339124/148‑1 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCa < 1:1885473/148‑1 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCACCCGAACCCAC‑AC‑CCCAAAGGGGCGCGGGGGCCCGTCAGGACGGCAATTTGATTGTCGGGGCTATCCAGCCGTAAATACTGGCa > 2:577336/1‑148 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCaa < 2:2303291/148‑1 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCaa < 1:2206244/148‑1 (MQ=255) gcCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATAc < 1:2604576/148‑1 (MQ=255) gcatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAGGCTAACCCTC‑TC‑CCAAAATGTTCTAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGGATTAAATACTGGCAATACtctc < 1:2700010/148‑1 (MQ=255) gcatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACtctc < 1:1245872/148‑1 (MQ=255) catcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCa < 2:1266930/148‑1 (MQ=255) catcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCa < 2:962086/148‑1 (MQ=255) cgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCCCCCTAACCCAC‑TC‑CCCCAAGGGGCGAGGGGCCCCTTCAGTACGGAAGTTATCTTGTCGGTGCGATACAGCATTAAATAATGGCAATACTCACACGc > 2:2007969/1‑148 (MQ=255) atcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCaaa < 1:669073/148‑1 (MQ=255) ccGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAAt < 2:2489940/148‑1 (MQ=255) cGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATc < 2:1186831/148‑1 (MQ=255) gCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCg < 2:778014/148‑1 (MQ=255) gCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCg < 2:1032637/148‑1 (MQ=255) gCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCGCACCCTAAACCAC‑AA‑CCCCAAGGGGCGCGGGGGCCCTTCAGTAAGGAAATTATCTTGACGGTGGTATCAAGCCATAAAAAATGGCAAAACACTAACGCAAAAAACgcagca > 2:2913481/1‑148 (MQ=255) cgcgTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtc < 2:1806397/148‑1 (MQ=255) cgcgTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtc < 2:2031869/148‑1 (MQ=255) gcgTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtct < 2:2741842/148‑1 (MQ=255) gTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTctct < 2:1670103/148‑1 (MQ=255) gTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTctct < 2:1669878/148‑1 (MQ=255) ttGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCtt < 2:2109945/148‑1 (MQ=255) gAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCa < 2:97967/148‑1 (MQ=255) aCATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGc < 1:3358002/148‑1 (MQ=255) ccGTACGTTCCCCTCACCCTCACCCTC‑TC‑CCCACCGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTc < 2:3124127/148‑1 (MQ=255) tACGTTCCCCTCACCCTCACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCggg < 2:727431/148‑1 (MQ=255) tACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCggg < 2:1482997/148‑1 (MQ=255) ggtCCCCTCACCCTACCCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTa < 1:2565424/146‑1 (MQ=255) gTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTa < 1:2996371/148‑1 (MQ=255) gTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTa < 1:1214453/148‑1 (MQ=255) tCCCCTCACCCTAACCCTC‑TC‑CCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt < 1:746847/148‑1 (MQ=255) tCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt < 1:1708909/148‑1 (MQ=255) tCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt < 1:1708926/148‑1 (MQ=255) ccccTCACCCAAAACCAC‑AC‑CCCAAAAGGGCGAGGGGACCGTTCAGTACGGAATTTAGATTGACGGTGCTATCCAGCAATAAATACTGTCAATAAACAAACGCAAAATACGCAGCACCGACTATTCAACCCAGCGATTCGGGTTAAtt > 1:1791742/1‑147 (MQ=255) ccTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCg > 2:2835696/1‑148 (MQ=255) cACCCTACCCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt < 1:379971/148‑1 (MQ=255) cACCCTAACCCTC‑TC‑CCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt < 1:841392/148‑1 (MQ=255) cACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt < 1:3056291/148‑1 (MQ=255) cACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAGTCGGGTTAATGCGAAt > 1:2394572/1‑148 (MQ=255) aCCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATc > 1:3406655/1‑148 (MQ=255) ccTAACCCTC‑TC‑CCCATAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCACTACTCTCACGCAAATTACGCAGCACCGTCTCTTCTCCGCTGCGATTCGGGTTAATGCGAATCGc > 2:2604510/1‑148 (MQ=255) ccTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGc > 2:1257351/1‑148 (MQ=255) ccTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTGAATGCGAATCGc > 2:3565047/1‑148 (MQ=255) cTAACCCTC‑TC‑CCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGca < 2:2177713/148‑1 (MQ=255) aaCCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcaca > 2:65344/1‑148 (MQ=255) aCCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACaa > 1:137916/1‑148 (MQ=255) aCCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACGCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACaa > 1:2338846/1‑148 (MQ=255) ctc‑tC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGt > 2:1982144/1‑148 (MQ=255) ctc‑tC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGt > 2:2319340/1‑148 (MQ=255) tc‑tc‑CCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAGTCGGGTTAATGCGAATCGCACAATGtt < 2:3465587/148‑1 (MQ=255) tc‑tc‑CCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt < 1:725152/148‑1 (MQ=255) c‑tc‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTc > 1:2607507/1‑148 (MQ=255) cccAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGa < 2:205153/148‑1 (MQ=255) ccAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAt < 1:2342587/148‑1 (MQ=255) cAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAtt > 2:3522220/1‑148 (MQ=255) | TCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTC‑TC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATT > CP009273/3498093‑3498385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |