| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 161,068 | A→C | 10.5% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 161,068 | 0 | A | C | 10.5% | 460.5 / 7.5 | 232 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (94/107); new base C (9/22); total (103/129) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.05e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 235 total aligned reads displayed.
CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160919‑161217 | cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 1:384670/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt < 1:398353/150‑1 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt < 1:458216/150‑1 (MQ=255) gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc > 1:1280050/1‑150 (MQ=255) ggTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGCCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAgcg > 1:4947278/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:1078352/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:1454580/1‑150 (MQ=255) aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg > 2:2063172/1‑150 (MQ=255) aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACGt > 1:764267/1‑150 (MQ=255) aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACGt > 1:2468029/1‑150 (MQ=255) agtgaTGAAAGGGCTTTATCCCAAACCTGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGAGGGACGAAAACGTTTTGGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTtc < 2:1003157/147‑1 (MQ=37) gaTGAACGGGCGTTACCCCAAACTTTTCTGGCCGGACGACCCGGCAAATACTGCACCTCCGCGACGGACTAAAATTTTTTCGTATGGTGGTTTTGCTCCCTCCCCCTGTGGGTGCGGGCGGGGGTGAGGGCCTCAGCGCGCACGTtcacc < 2:2589864/150‑1 (MQ=255) aaGGGCGTTATCCCACACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTtcaccctcac < 2:1361093/150‑1 (MQ=255) aaGGGCGTTATCCCAACCATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcac < 2:1993987/150‑1 (MQ=255) aaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcac > 2:3659929/1‑150 (MQ=255) gggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcaccc < 2:3986020/150‑1 (MQ=255) gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACAACCAAAc > 2:1850506/1‑150 (MQ=255) tATCCAAAACATGTCGGGCCGGACGACCCGGCAATTACTTCACGGACGCGAGGGACGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAAccc < 2:4884438/150‑1 (MQ=37) aTCCCAAACATGTCTGGCCGGACGACCCGGCAAATACGGCACCGACGCGACGGACGAAAAAGTATTCGTATGGTGGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCct < 2:148741/150‑1 (MQ=255) cccaaaaCAGGTCGGGCCGGACCACCCGGCAAATACTGCACCGACGCGACGGACTAAAATGTATGCGAACGGTTGGTTTACCCCATCCCCCTGGGGTAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCctc < 2:1956475/146‑1 (MQ=255) cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCCCCCACACCCGATCCcgct > 2:5290021/1‑150 (MQ=38) ccaaaaCATGTCGGGCCTGACGACCCGTCAAATACTGCCCCGACGCGACGTACGAAATTTTATTCGTAAGGTTGGTTTCCTCCCTCTCCCTGTGGTTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCctct < 1:1624610/147‑1 (MQ=37) cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTcc < 2:3341283/150‑1 (MQ=255) aaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAATGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCAACCtaaccctaacccacaacca > 2:3523774/1‑143 (MQ=38) aCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCAACCGCACCCAAACCCACTcccgc > 1:4442248/1‑148 (MQ=38) cATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTGACCCACACCCGAACCCACTaccgcc > 1:3481808/1‑147 (MQ=37) gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCCGCGCGCACGTTGACCCTCACCCGAAACCACTCCCGCAAgg > 1:2102151/1‑150 (MQ=38) gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCCACCAAAACCTCACCCACaacg > 2:2754286/1‑148 (MQ=38) tCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCGAACCCACTCCCACACggg > 1:3404057/1‑150 (MQ=255) tGGCCGGACGACCCGGCAAAGACTGCACCGCCGCGACGGACGTAAAAGTATTCGTAAGGTTGTTTTTCGCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgag < 2:3444158/150‑1 (MQ=38) ggCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCAAACCCTCACCCCCAAGGgtga > 1:3213470/1‑150 (MQ=37) ccGGACGCCCCGTCAAATACGGCACCGACGCGACGGACGCAAAAGTATTCGTATGGTTGGTTTTCTCCCTCACCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgg < 2:3309430/150‑1 (MQ=38) gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCGCAGCGCGCCCGTGCACCCACACCCACACCCACACCCGCCAGGGACAGGGGa > 2:5178491/1‑150 (MQ=37) acgacCCGGCAAATCCGGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc < 2:4115134/150‑1 (MQ=255) cgccccGGCAAAAACTGCCCCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAcc < 1:4469267/147‑1 (MQ=255) cgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCGCACCCGAAACCGCTACCACAAGGGAGTGGGGTcc > 1:3403780/1‑150 (MQ=37) cgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGGGAGGGCATCAGCGCGCACGTTCCCCCTCACCCGAAACCACTCCCTGACGGGAGCggggcgc > 2:4401564/1‑147 (MQ=37) gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGGCACCCACCCCCAAACCCACTCCCACAAGGGAGAGGGGAccc > 1:1245811/1‑149 (MQ=37) gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGGACCCCCCCCCAAACCCACTCCCGCAAGGGGGAGGGGGCCg > 1:2208119/1‑150 (MQ=37) ccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGTGGACCGATc < 2:4690702/150‑1 (MQ=255) ccGGAAAATCCTGCACCGACGCGCCGGACGAAAAAGTATTCTTAAGGTTGTTTTTATCCCTCTCCCTGTGGTTGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 1:1374922/150‑1 (MQ=255) gCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 2:1834380/150‑1 (MQ=255) gCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCGGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 2:4487192/150‑1 (MQ=255) aaaaACTGCACCCACGCGACGGACGAAAAAGTATTCGTACGTTTGGTTTTCTCCCACTCCCGGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGca < 1:402464/150‑1 (MQ=38) aaTACGGCCCCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGATTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcac < 1:3919822/150‑1 (MQ=255) tACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCAAAACCACTCCCTCCAGGGAGAGGGGACCGATCGCGCAC‑‑aa > 2:3188666/1‑150 (MQ=38) tACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGGTCACCCACACCCAAACCCACACCCGCAAGGGGGCGGGGCCCCATAGAGcacca > 1:3835837/1‑148 (MQ=25) cggCACCGACGCGACGGACGAAACCGTATTCGTCCGGTTGGTGTTCTCCCTCTCCCGGTGGGAGAGGGCCGGGGGGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAt < 2:5457134/148‑1 (MQ=255) cTGCACCTCCGCGAGGTACTAAAATTTATTGTTATGTTGGGTTTTCACCCGCCCCCTGGGGTTGTGGGCCGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAt < 1:1067867/150‑1 (MQ=255) cTGCACCGACGCGAGGGACTAAAAATTATTGGTATGGTTGGTTTTCTCCCTCCCCCGGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAt < 1:1572616/150‑1 (MQ=255) tGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCTAACCCACTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAtt > 2:1694039/1‑150 (MQ=255) tGCACCGACGCGACGGACGAAAAAGTAGTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACGTGCACCCACACCCGAACCCTCTCCCACCCGGGGGGGGGGCCCGATCGTGCAC‑‑AAAtg > 2:4187379/1‑149 (MQ=25) ggCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAtt < 2:4354251/149‑1 (MQ=255) cgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCGCCCACACCCAAACCCACAACCACAAGGGAGTGGGGACCGAAAGAGCAC‑‑AAATTTTGAGAGata > 1:4740931/1‑150 (MQ=37) gacggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGGCACCCTCACCCTAACCCTCTCCCTCAAGGGCGAGGGGACCCCTCCAGCAC‑‑AAATTTTGAGAGatat > 2:3360586/1‑150 (MQ=38) gacggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCACACCCAAAACCACTACCACCAGGGAGAGGGGACCGATCGAGCAC‑‑CAAATTTGAGAGatat > 1:4081985/1‑150 (MQ=37) acggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtc < 2:3629294/150‑1 (MQ=255) cggacgAAAATGTTTTCTTATGGTTGGTTTTCTCCAGCTCCGTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtct < 1:2908391/150‑1 (MQ=255) cggacgAAAAAGGATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtct < 2:3619857/150‑1 (MQ=255) ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGCACCCACACCCTAACCCTCTCCCGCCAGGGAGAGGGGACCGATCGAGCCC‑‑AAATTTTTGGAGATAtctt > 1:3506559/1‑150 (MQ=37) ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACTCCCACAACGGCGAGGGGACCCATCGACCCC‑‑AAAATTTGATAGATAtatt > 2:4682675/1‑150 (MQ=25) acgAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtcttct < 2:2983442/150‑1 (MQ=255) acgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACACCCAAAACCAAACCCAAAAAGGGGAGGGGGCCCAAAGAGCACAAAAATTTTGAGAtataatat > 2:2549394/1‑146 (MQ=16) cgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCAAACCCACCAGGGGGTGGGGGCCCCTAGAGCAC‑‑AAAATTTGTTAGATAtcttatt > 2:408501/1‑150 (MQ=21) gAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtcttcttc < 1:3059139/150‑1 (MQ=255) aaaaGTATTCTTAAGGTTGGTTTTCTCCCACTCCCTGTGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTg < 2:1183428/150‑1 (MQ=255) aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCTCACCCAAACCCACTCCCTACAGGGAGCGGGGACCGATAGAGCAC‑‑CAATGTTGAGAGCTATCATCTTCGGTCTGGt > 2:3151707/1‑150 (MQ=25) aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGAACGTTCAACCTCAACCTAAACCAATACCTCAAGGGAGAGGGGAACGATAGAGCAC‑‑AAATTTTGAGACATATATTCATATGTCTTGt > 2:2859286/1‑150 (MQ=25) gcGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:3451290/149‑1 (MQ=255) tAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGCCCCACCACCGAAACCACTCCCTCACGGGTGAGGGGTCCCAAAGAGCAC‑‑AAAATTTTAGGGATATATTCTTATTTCTTGttcacg > 1:4840503/1‑145 (MQ=12) aGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCTCTCCCACAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAATTTTAGAGATATATTCTTATGTCTTGTTAAagaa > 2:1910178/1‑150 (MQ=37) ggttgtttTCCTCCCTCGCCCTGGGGGAGTGGGCGGGGGGGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag < 1:519342/150‑1 (MQ=255) tggttTTCTCCCTCGCCCTGGGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 2:1136944/150‑1 (MQ=255) ggttTTCTCCCTCTCCCTGTGGGAGCGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 2:2031043/150‑1 (MQ=255) ggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCCCCCACACCCAAAACCACACCCGCAAGGGGGAGGGGCGCGCTCGGGCAC‑‑AAAATTTTTGTGATATATTAATATGTCTTGTAAAAGAAGAACa > 1:3611735/1‑150 (MQ=16) ggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCTCACCCAAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGTGAGATATCTTATTCTGTCTTGTAACAGAAGTACa > 2:4445516/1‑150 (MQ=38) tccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATc < 2:794337/150‑1 (MQ=255) cctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCgg < 2:3461219/150‑1 (MQ=255) ctcgcccgGGGGGAGCGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCggg < 2:1501316/150‑1 (MQ=255) tctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCAACCACACCCCAACCCACTACCACCAGGGGGGGGGGGCCCCACGAGGAC‑‑AAAATTTGTGAGGTATATTCTTGTGTGGTGGAACACGAGAACCGAAAATAgggg > 2:235550/1‑149 (MQ=12) ttccgtGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCt < 1:3313339/149‑1 (MQ=255) ctccctGTGGTAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCt < 2:1935406/150‑1 (MQ=255) ctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCAAACCCAAAACCACTCCCTCAAGGGCGAGGGGCCCGGTCCAGCAC‑‑AAATATTGAGAGATATATTATTATGTGTTTTTACAGCAGTACGGAACATCGGGcg > 2:3816992/1‑149 (MQ=19) cctGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 2:4611840/150‑1 (MQ=255) ccggtgGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 2:2153571/147‑1 (MQ=255) ctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCACTACCACAAGGGGGTTGGGACCGATCGAGCAC‑‑AAATTTTGTGTGATTTCTTATTAGGTCGTGTGACATTAGAACAGAAAATCGGGGTTTTg > 2:1298193/1‑150 (MQ=255) tgtgGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCTCACCCGAAAACACACCCTCAAGGGGGTGGGGACCGTTCGAGCAC‑‑AAATTTTGGGAGATATATTATTATGTGTTGTAACAGAAGAACAGAAAATAgggggttttc > 2:4108730/1‑143 (MQ=255) gggAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGcc < 2:4931145/150‑1 (MQ=255) ggAGTGGGCGGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:1906952/150‑1 (MQ=255) ggAGTGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 2:5014315/150‑1 (MQ=255) agagGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACTCCCGCAAGGGAGAGGGGACCCATCGAGCAC‑‑AAAATTTGATAGATATATTATTATGTATTGTAAAAGAAGAACAGAAAATAGGGCTTTTTCGCCTGa > 2:132717/1‑150 (MQ=255) agGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCAAACCCTCTACCTCCATGGAGAGGGGCCCGATCGAGCAC‑‑AAATTTTGAGAGATAAATTATTATTTCTTGTAAAAGAATAACAGAAAAACGGGCTTTTGCGGCTGaaa > 2:4325234/1‑149 (MQ=255) ggCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 1:4536251/150‑1 (MQ=255) gcgggggTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt < 1:2549394/147‑1 (MQ=255) ccGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 1:2035290/150‑1 (MQ=255) ggggTGAGGGCATCAGCGCGCACGTTCAACCTAACCCGAAACCACTACCACAATGGAGAGGGGACCCATAGAGCAC‑‑AAATTTTTATAGATATATTATTATGTCGTGTAAAAGAAAAACAGAAAAACGGGGTTTTGAGCCAGAATATTggg > 2:4970939/1‑148 (MQ=255) ggggTGAGGGCATCAGCGCGCACGTGCACCCGCACCCGAAACCAAAACCACAAAGGAGAGGGGGCCGAACGAGCAC‑‑AAAATTTTTGATTTATAATATTAAGTAGTTTAAAAGAATAACAAAAAATAGGGCTGTTTCGCCGGaaaaatgag > 2:1913834/1‑143 (MQ=255) ggTGCGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:1910198/150‑1 (MQ=255) cgCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 1:2791872/149‑1 (MQ=255) cATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc < 2:4225970/150‑1 (MQ=255) | CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160919‑161217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |