New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 2063755 | NA (NA) | 4 (0.020) +T |
3/272 | NT | 40.2% | pseudogene (5/205 nt) | yoeA | CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion |
? | CP009273 | 3833567 = | 6 (0.030) | intergenic (‑214/‑8) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein |
GACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2063650‑2063755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATT > CP009273/3833567‑3833706 | GACATAAATCATCTGTTCTCCAATGACTAGTCTAAAAACTATTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGATATTCAGGGGGCCAGTCTAATGTTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACT < 1:2537977/148‑1 ATCTTTTCTCCAATGACTAGTATAAAAACTATTATTAAGACTATCACTTATTTATGTTATATTGGTTGTCTGTAGATTCTGGGGGCAAGTCTAATGTTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTA < 1:1593748/148‑1 tttgtGGGGGACATTCTAATGTTTTAATCCATTAAACCACCGACACTACTGCTTATTTTCACTTTTTTCGCTTTGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGAAAAAGATAAAACCACGGTATTACAAG < 1:2988683/143‑1 tTTCTGGGGGCCATTCTAATGTTTTAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAG < 1:2241792/147‑1 ttttaaaTGTTTGAACCAATTAAACAAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTACAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAA < 1:995029/141‑1 tctaacGTTTAAATCAATCAACCCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCTGGCATCTTATCCGCCGAGTCGCGTTTTAGCTCACTGCAGTCAGAAAAAGATAAAACCACGGTATTACAAGATTTACGTAAAATT < 1:1521633/142‑1 tataaTGTTTTAATCCATCAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATT < 1:3166974/143‑1 | GACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2063650‑2063755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATT > CP009273/3833567‑3833706 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |