| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 332,599 | G→T | 100% | A37A (GCG→GCT) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 332,599 | 0 | G | T | 96.4% | 620.2 / 11.6 | 205 | A37A (GCG→GCT) | yahF | putative NAD(P)‑binding succinyl‑CoA synthase |
| Reads supporting (aligned to +/- strand): ref base G (3/5); new base T (105/92); total (108/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 219 total aligned reads displayed.
TGGTTGTGCGCTGAGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCGATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACTGGTGGAGATTGA > CP009273/332454‑332742 | tGGTTGTGCGCTGAGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGtggctat < 2:2235102/148‑1 (MQ=255)tGGTTGTGCGCTGAGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGtggctat > 2:2478429/1‑148 (MQ=255) ggTTGTGCGCTGAGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGtggctatg < 2:688638/148‑1 (MQ=255) gTTGTGCGCTGAGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGtggctatgg < 2:3344346/148‑1 (MQ=255) tgCGCTGAGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGAc > 2:30211/1‑148 (MQ=255) gAGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAAt < 2:2817308/148‑1 (MQ=255) aGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATg > 1:2171517/1‑148 (MQ=255) aGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATg > 1:2171358/1‑148 (MQ=255) aGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATg > 1:1382073/1‑148 (MQ=255) gCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGa < 2:2114728/148‑1 (MQ=255) aCCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCGATGGCGACCGAAATGAATaaa < 2:3514001/148‑1 (MQ=255) ccTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAg < 1:3053619/148‑1 (MQ=255) aCGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCg > 2:2761075/1‑148 (MQ=255) gAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGACTACCTGTTGTGATTCTTTCTCGCTGATGTCTATCTCCACGCGATCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCGCTGGCGACCGAACGGAATCAAGGCGTGc > 2:3505608/1‑148 (MQ=255) gAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGc > 2:3076262/1‑148 (MQ=255) aGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCt < 1:1216482/148‑1 (MQ=255) ggAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTga > 1:3395233/1‑148 (MQ=255) aaTTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTgaag < 1:3509305/148‑1 (MQ=255) aaTTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTgaag > 2:1390763/1‑148 (MQ=255) ttATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTgaagaa < 2:1101171/148‑1 (MQ=255) ttATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTgaagaa > 1:204760/1‑148 (MQ=255) ttATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTgaagaa > 1:2949410/1‑148 (MQ=255) tGTCAGTTAAAATAGTCATTAAACCGAATACCTATGTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCACATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAAttt > 1:2607448/1‑148 (MQ=255) gTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGACTAAAGGCGTGCTGAAGAATTTa > 2:2663344/1‑148 (MQ=255) aGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGa < 2:2900640/148‑1 (MQ=255) aGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGa < 2:1173765/148‑1 (MQ=255) gTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGAc < 1:1598841/148‑1 (MQ=255) ttAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGAct > 2:342155/1‑148 (MQ=255) tAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGActg < 1:1752531/148‑1 (MQ=255) tAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGActg > 1:983298/1‑148 (MQ=255) tAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGActg < 1:1940376/148‑1 (MQ=255) tAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGActg < 2:1040044/148‑1 (MQ=255) tAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGActg < 1:1232844/148‑1 (MQ=255) aaaaTAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGActgc < 2:2070252/148‑1 (MQ=255) aaTAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGActgctg < 2:3305757/148‑1 (MQ=255) aaTAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGActgctg > 2:23736/1‑148 (MQ=255) aTAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGa < 1:2634061/148‑1 (MQ=255) aTAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGa < 1:876547/148‑1 (MQ=255) tAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGAc > 2:148916/1‑148 (MQ=255) aGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACg > 1:1275120/1‑148 (MQ=255) aGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACg > 2:1277840/1‑148 (MQ=255) cATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCg < 1:2560212/148‑1 (MQ=255) aTTAAACCGAATAGCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGGGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTCTGGCGAGCGAAATGACTAAAGGCGTGCTGAAGAAGGTAGGACTGCTGACGCCgg > 2:288563/1‑148 (MQ=255) aCCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTg < 2:1460604/148‑1 (MQ=255) aCCGAATACCCATTTTGATTCTGTCTCGCTTATGTCTATCTCCACGCGTGCAAATTAACTAGACGGAGTCGATCAGGAATTTGTGTCTATGGAGACCGAAATGAATAAAGGCTTGCTGAAGAATTTAGGACTGGTGACGCCGGAGCTg < 2:178500/148‑1 (MQ=255) aCCGAAGACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTg < 2:1401785/148‑1 (MQ=255) gAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAg > 2:1885405/1‑148 (MQ=255) gAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCGATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAg > 2:379758/1‑148 (MQ=255) aTACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCa > 2:1524020/1‑148 (MQ=255) aTACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCa > 2:652153/1‑148 (MQ=255) aCCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAgg > 2:2287608/1‑148 (MQ=255) ttttGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGaaa > 2:3381004/1‑148 (MQ=255) tttGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGaaaa < 1:1156766/148‑1 (MQ=255) gATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACg > 1:1331551/1‑148 (MQ=255) gATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACg < 2:2740759/148‑1 (MQ=255) tctcGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCt > 1:2485274/1‑148 (MQ=255) ctcGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAAGGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCtg > 2:2063189/1‑148 (MQ=255) tcGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAACCGGCGACCtga > 2:3399152/1‑148 (MQ=255) gCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCtgatg < 2:1580225/148‑1 (MQ=255) gATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCTTTTGGGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGAtt < 1:2033168/148‑1 (MQ=255) gATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGAtt > 1:399424/1‑148 (MQ=255) gTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGtc > 1:1835311/1‑148 (MQ=255) gTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGtc > 1:1547576/1‑148 (MQ=255) gTCTATATCCACGCGTGCAAATAAACTCGACGGCGTCGAGAAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGtc > 1:2948664/1‑148 (MQ=255) tCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGTGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGtca < 1:2761075/148‑1 (MQ=255) cTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGtcat < 2:154795/148‑1 (MQ=255) cTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGtcat > 1:1655644/1‑148 (MQ=255) tATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGATGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGtcatc < 2:2963826/148‑1 (MQ=255) aTCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGtcatca > 1:2918853/1‑148 (MQ=255) tctcCAGGCGTGCAAATAAACTCGACGGGGTCGAGCTGGCATTTGTGGATTTGGCGACCTAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGGTGGAGCAGGCTAAAAACGGCGACCTGATGATTGTCATCaa < 1:1895816/148‑1 (MQ=255) tctcCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCaa < 2:492883/148‑1 (MQ=255) ctcCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGtcatcact > 2:3344147/1‑146 (MQ=255) tcCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATg < 2:3225128/148‑1 (MQ=255) cgcgTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTaa > 1:3429422/1‑148 (MQ=255) gcgTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTaaa < 1:2259021/148‑1 (MQ=255) ggCAAATAAACTCGGCGGCGTCGAGCAGGCATTTGTGGCGATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCg < 2:1533793/147‑1 (MQ=255) cAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCggg < 2:1906546/148‑1 (MQ=255) aaaTAAACTCGACGGCGTAGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGt > 2:3045894/1‑148 (MQ=255) aaTAAACTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTg > 1:2392495/1‑148 (MQ=255) aaCTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGa < 2:3426917/148‑1 (MQ=255) aaCTCGACGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGa < 1:2837353/148‑1 (MQ=255) cTCGACGGCGTCGCGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACa < 1:3170563/148‑1 (MQ=255) aCGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGa < 1:652153/148‑1 (MQ=255) cGGCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGTTTGGGGGGCGGGGGACATCGGGTGCGGACAACGAg > 2:1607545/1‑148 (MQ=255) ggCGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGc < 2:1981783/148‑1 (MQ=255) cGTCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAg < 2:792765/148‑1 (MQ=255) cGTCGAGCAGGCAGTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAg < 1:2678208/148‑1 (MQ=255) tCGAGCAGGCATTTGTGTCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGtt < 2:2291219/148‑1 (MQ=255) tCGAGCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGtt < 1:3358862/148‑1 (MQ=255) cGAGCAGGCATTTGTGGCTATGGCGACCGATATTAATAAAGGCGTGCTGATGAATTTTGGACTGCTGACGCCGTAGCTGGAGCAGTCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTa < 2:2665935/148‑1 (MQ=255) gCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACtg > 1:597174/1‑148 (MQ=255) gCAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACtg < 1:3311093/148‑1 (MQ=255) cAGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACtgg > 1:2979791/1‑148 (MQ=255) aGGCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACtggt < 2:1500316/148‑1 (MQ=255) gCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACtggtgg < 1:1859436/148‑1 (MQ=255) gCATTTGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACtggtgg > 1:924641/1‑148 (MQ=255) tttGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACTGGTGgaga > 1:3431381/1‑148 (MQ=255) ttGTGGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACTGGTGGAGAt < 2:2591662/148‑1 (MQ=255) tgtgGCTATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACTGGTGGAGAtt < 1:3153182/148‑1 (MQ=255) tggctatggcgaCCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACTGGTGGAGATTga < 2:204409/148‑1 (MQ=255) | TGGTTGTGCGCTGAGCCAAACCTACGGAGGGAATTATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACGCGTGCAAATAAACTCGACGGCGTCGAGCAGGCATTTGTGGCGATGGCGACCGAAATGAATAAAGGCGTGCTGAAGAATTTAGGACTGCTGACGCCGGAGCTGGAGCAGGCGAAAAACGGCGACCTGATGATTGTCATCAATGGTAAATCGGGTGCGGACAACGAGCAGTTACTGGTGGAGATTGA > CP009273/332454‑332742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |