| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,589,130 | G→T | 100% | I43I (ATC→ATA) | opgB ← | phosphoglycerol transferases I and II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,589,130 | 0 | G | T | 97.4% | 724.5 / 8.1 | 233 | I43I (ATC→ATA) | opgB | phosphoglycerol transferases I and II |
| Reads supporting (aligned to +/- strand): ref base G (2/4); new base T (118/108); total (121/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 233 total aligned reads displayed.
AACACCGCTGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTGATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACAACGGGCGATCCTCACTA > CP009273/4588987‑4589274 | aaCACCGCTGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTatat > 1:1023430/1‑148 (MQ=255) ccacCGCTGTCAGCCCCAGCACAATGCCGAGACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATAtt < 2:2363104/147‑1 (MQ=255) acacCGCTGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATAtt > 2:1740456/1‑148 (MQ=255) acacCGCTGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATAtt > 1:1991791/1‑148 (MQ=255) acCGCTGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTa < 2:2615258/148‑1 (MQ=255) cGCTGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTaaa < 1:2166683/148‑1 (MQ=255) cTGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAAc > 2:55915/1‑148 (MQ=255) cTGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAAc > 2:2896997/1‑148 (MQ=255) tGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGGTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACg < 1:331916/148‑1 (MQ=255) gTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGa > 2:937658/1‑148 (MQ=255) ccccAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTGATATTTAAAACGACAAAt < 2:1047010/148‑1 (MQ=255) ccAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAg > 1:1974865/1‑148 (MQ=255) ccAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAg > 1:2405649/1‑148 (MQ=255) ccAGCACAATGCCGATACCCGGCAAAAGGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACCGGGTTATATTTAAAACGACAAATAg < 1:2823979/148‑1 (MQ=255) cAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCAAGTAAAATAGTCGCTGGCAAACCGGGTTATATTTAAAACGACAAATAGc < 1:1678504/148‑1 (MQ=255) agaaaaaTGCCTATACCCGGAAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCATTAAAATAGTCGCTGGAAAACAGGTTTATATTTAAAACGACAAATAGcc < 1:3412258/143‑1 (MQ=255) aGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGcc < 2:1392516/148‑1 (MQ=255) aGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGcc > 2:537924/1‑148 (MQ=255) gCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGccc < 1:2688234/148‑1 (MQ=255) ccacaATGCCGATCCCCGGAAAAATGAATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGACAACCCCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATTTTTAAAACGACAAATAGccc < 1:536802/147‑1 (MQ=255) cacaATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATAACAACGCCCGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAAAGACAAATATcccc > 1:1486827/1‑148 (MQ=255) aaTGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGc > 1:1399310/1‑148 (MQ=255) tGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCAc > 1:290771/1‑148 (MQ=255) ccGATACCCGGCAAAATGTATTTGCTGCCGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCg < 1:1099278/148‑1 (MQ=255) ccGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCg < 2:1166973/148‑1 (MQ=255) ccGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCg < 2:3331605/148‑1 (MQ=255) cGATACTCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGt < 2:1220433/148‑1 (MQ=255) gATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGtt > 1:925107/1‑148 (MQ=255) aTACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTa > 1:614370/1‑148 (MQ=255) aTACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTa > 1:1168316/1‑148 (MQ=255) tACCCGGAAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTaa < 2:521421/148‑1 (MQ=255) cccGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACg > 2:2421404/1‑148 (MQ=255) cAAAATGTATGTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCt < 2:147153/148‑1 (MQ=255) aTGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCaa > 2:1864662/1‑148 (MQ=255) tGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCaaa > 2:673538/1‑148 (MQ=255) aTTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCATTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAacca < 1:2661982/148‑1 (MQ=255) ttGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATATTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAaccacc < 2:2339474/148‑1 (MQ=255) gCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGTTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAg < 1:571174/148‑1 (MQ=255) cTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCACACCACCAgg > 2:3402179/1‑148 (MQ=255) gACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGgtg > 2:1779239/1‑148 (MQ=255) gACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGgtg > 2:624581/1‑148 (MQ=255) aCGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGgtgt > 2:2464265/1‑148 (MQ=255) aCGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGgtgt > 2:3049949/1‑148 (MQ=255) cGCCAGCACCGGTCAGGCTGTTGGTTATGGTATAGAGAACCGCTTCGTTAATACCATCGCCATTAAAATAGTCGCTGGCAAACTGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGtt < 1:2661037/148‑1 (MQ=255) ccAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTAc > 2:2852692/1‑148 (MQ=255) cAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACg < 1:2272884/148‑1 (MQ=255) aGCACCGGTCTGGCTGTTGGTTAAGGTATAGAGAACCTCGTCGTTAATCACATCGCCAGTAAAATAGTCGCTGTCAAACAGGTTTTTATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGt < 1:501853/148‑1 (MQ=255) gCACCGGTCAGGCTGTTGTTTAAGGTATAGAGAACCGCTTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTc < 1:2396281/148‑1 (MQ=255) aCCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAAAGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTccc > 1:474188/1‑148 (MQ=255) ccGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCg < 2:849063/148‑1 (MQ=255) ccGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCg > 1:208926/1‑148 (MQ=255) ccGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCg > 1:2045814/1‑148 (MQ=255) tCAGGCTGTTGGTTATGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCttt < 1:937658/148‑1 (MQ=255) cAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTc < 2:2059762/148‑1 (MQ=255) aGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATCCCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTcc < 2:1515050/148‑1 (MQ=255) aGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTcc < 2:1514538/148‑1 (MQ=255) gCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCAt > 2:416874/1‑148 (MQ=255) cTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCCCCAGGTGTTACGTCCCGCTTTCCATg > 1:3378986/1‑148 (MQ=255) gTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCCCCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCg > 1:3326226/1‑148 (MQ=255) gTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTGATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCTCTTTCCATGCg < 2:460678/148‑1 (MQ=255) ttGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGt > 1:483808/1‑148 (MQ=255) tAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATc < 1:3029580/148‑1 (MQ=255) tAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATc > 1:3405626/1‑148 (MQ=255) aGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAg < 2:1974865/148‑1 (MQ=255) ggTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCCAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGc > 2:2787970/1‑148 (MQ=255) taGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACag > 1:3089898/1‑148 (MQ=255) agagAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACaga < 2:2635739/148‑1 (MQ=255) cgtcgtTAATACCATCGCCACTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATATCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGGTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGaaa > 1:44438/1‑148 (MQ=255) gtcgtTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGaaaa > 1:3450064/1‑148 (MQ=255) cgtTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAg < 2:2230579/148‑1 (MQ=255) gtTAATACCATCGCAAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAgg < 1:2808059/148‑1 (MQ=255) tAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGc > 1:2459378/1‑148 (MQ=255) aTACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAACAAGGGCGa > 2:1999249/1‑148 (MQ=255) tACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGaa < 2:290771/148‑1 (MQ=255) tACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGaa < 1:2368085/148‑1 (MQ=255) aCCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGaaa > 2:2931143/1‑148 (MQ=255) cATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAACAAGGGCGAAaga > 1:1791558/1‑148 (MQ=255) tCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAagaga > 2:509491/1‑148 (MQ=255) tCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAagaga > 2:247427/1‑148 (MQ=255) tCGCCAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAagaga > 2:1989285/1‑148 (MQ=255) ccAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGagta < 2:2045814/148‑1 (MQ=255) cAGTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGagtag < 2:2900862/148‑1 (MQ=255) gTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGtt > 1:1640187/1‑148 (MQ=255) gTAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGtt < 2:1422679/148‑1 (MQ=255) tAAAATAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTc > 1:2632692/1‑148 (MQ=255) aaaTAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTg > 1:1219905/1‑148 (MQ=255) aaaTAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCAAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTg > 2:3274806/1‑148 (MQ=255) aaTAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGa < 1:1740421/148‑1 (MQ=255) aTAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGAc > 2:1540270/1‑148 (MQ=255) tAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACa > 2:2543476/1‑148 (MQ=255) tAGTCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACa > 1:1309897/1‑148 (MQ=255) tCGCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTCGTTCTGACAACg > 2:481598/1‑148 (MQ=255) gCTGGCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACAACggg < 1:3301288/148‑1 (MQ=255) ggCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACAACGGGCGa < 1:779594/148‑1 (MQ=255) gCAAACAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAACAGGGCGAAAGAGAGTAGTTCTGACAACGGGCGAt > 2:3052127/1‑148 (MQ=255) aaaCAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACAACGGGCGATcc < 1:991421/148‑1 (MQ=255) aCAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACAACGGGCGATCCTc < 2:924909/148‑1 (MQ=255) cAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACAACGGGCGATCCTCa > 2:1719312/1‑148 (MQ=255) cAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACAACGGGCGATCCTCa > 1:1874932/1‑148 (MQ=255) cAGGGTTATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACAACGGGCGATCCTCa > 2:2864763/1‑148 (MQ=255) | AACACCGCTGTCAGCCCCAGCACAATGCCGATACCCGGCAAAATGTATTTGCTGACGCCAGCACCGGTCAGGCTGTTGGTTAAGGTATAGAGAACCGCGTCGTTAATACCATCGCCAGTAAAATAGTCGCTGGCAAACAGGGTGATATTTAAAACGACAAATAGCCCCAGCACCGTTAACGTGGCTGCAAACCACCAGGTGTTACGTCCCGCTTTCCATGCGTAAATCAGCACAGAGGCGAGAAAAAGGGCGAAAGAGAGTAGTTCTGACAACGGGCGATCCTCACTA > CP009273/4588987‑4589274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |