| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 58,723 | G→T | 100% | pseudogene (250/579 nt) | yabP → | pseudogene, pentapeptide repeats‑containing |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 58,723 | 0 | G | T | 99.0% | 643.2 / ‑1.8 | 200 | pseudogene (250/579 nt) | yabP | pseudogene, pentapeptide repeats‑containing |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (88/110); total (89/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 209 total aligned reads displayed.
CTTTCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACTTTTTTC > CP009273/58578‑58866 | cTTTCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATtag < 1:3134668/148‑1 (MQ=255)cTTTCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTGTACTGGGGCTATCAACGAGAATtag > 1:3375281/1‑148 (MQ=255)cTTTAAACGCTTGAGGGAGACGTTAAGCCATCTGTTCAGGTCAGATAAACAGAATGAGGCTTATAAACATCTTTTCAATTTCGTGAATAACAAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGTCTATCAACGAGAATtag > 2:3420921/1‑148 (MQ=255) tttCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATtaga < 2:1899159/148‑1 (MQ=255) tttCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATtaga < 2:1899482/148‑1 (MQ=255) ttCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATtagag > 1:1215102/1‑148 (MQ=255) cGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGaaa > 2:2923029/1‑148 (MQ=255) gCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGACTTAGAGAGaaaa > 2:3175809/1‑148 (MQ=255) gCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGaaaa < 1:2913350/148‑1 (MQ=255) cTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAg > 2:1500980/1‑148 (MQ=255) ttGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGt < 2:2342891/148‑1 (MQ=255) gggAGACGTTACGCCACCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTAt < 2:3260049/148‑1 (MQ=255) gaCGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAAt < 1:1025149/148‑1 (MQ=255) gaCGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAAt < 1:636762/148‑1 (MQ=255) gaCGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAAt < 2:2077631/148‑1 (MQ=255) aCGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATa > 1:142878/1‑148 (MQ=255) aCGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTg > 2:1798879/1‑148 (MQ=255) gCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGa < 1:1471914/148‑1 (MQ=255) ccATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGaa < 1:2541439/148‑1 (MQ=255) aTCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAatt < 2:194111/148‑1 (MQ=255) aTCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACCTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAatt < 2:151102/148‑1 (MQ=255) cTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAAt < 2:246506/148‑1 (MQ=255) gTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATaaa < 2:899273/148‑1 (MQ=255) gTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATaaa > 1:2491112/1‑148 (MQ=255) tCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAAc < 1:1681941/148‑1 (MQ=255) cAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACt > 1:202114/1‑148 (MQ=255) gATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTa < 2:1264907/148‑1 (MQ=255) aTAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTaa < 2:2145035/148‑1 (MQ=255) tAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTaaa < 1:2064003/148‑1 (MQ=255) aGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATg < 1:1354248/148‑1 (MQ=255) aCTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGACTTATTCAATAAACTTAAAACATgcg > 2:3199271/1‑148 (MQ=255) aCTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATgcg > 2:2378390/1‑148 (MQ=255) gAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCaa > 2:168029/1‑148 (MQ=255) gCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCaaaaa < 1:1741163/148‑1 (MQ=255) ttATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAAt < 2:645865/148‑1 (MQ=255) tataAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATc < 1:578018/148‑1 (MQ=255) ataAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATcc > 1:3248103/1‑148 (MQ=255) aaaCTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCgg < 2:2551171/148‑1 (MQ=255) aCTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGAt < 2:2743520/148‑1 (MQ=255) tCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAg < 2:3028629/148‑1 (MQ=255) tCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAg < 1:3373015/148‑1 (MQ=255) tCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAg < 2:1022549/148‑1 (MQ=255) cTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGt < 1:3153825/148‑1 (MQ=255) tGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGtt < 1:513084/148‑1 (MQ=255) gTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTg > 1:1972776/1‑148 (MQ=255) ttCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTgg > 1:411467/1‑148 (MQ=255) tCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGt > 1:3102284/1‑148 (MQ=255) aTTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTATAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGc > 2:2024393/1‑148 (MQ=255) aTTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGc > 2:2088003/1‑148 (MQ=255) aTTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGc > 2:132253/1‑148 (MQ=255) aTTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGc > 2:3058746/1‑148 (MQ=255) tttCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCa > 2:832404/1‑148 (MQ=255) gTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAgg < 1:1558078/148‑1 (MQ=255) gAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGc > 2:3194509/1‑148 (MQ=255) aTAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCaa > 2:836273/1‑148 (MQ=255) aTAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCaa > 1:3367671/1‑148 (MQ=255) ccAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATg < 2:1135061/148‑1 (MQ=255) cAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATgc > 2:2653659/1‑148 (MQ=255) cAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATgc > 1:3420181/1‑148 (MQ=255) aGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATgcg > 1:832138/1‑148 (MQ=255) gACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAAAAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATgcgc > 2:1637303/1‑148 (MQ=255) aCTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCt > 1:935708/1‑148 (MQ=255) ggCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTggg > 1:2162064/1‑148 (MQ=255) gCAACAACAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGATAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGt < 2:3442561/148‑1 (MQ=255) cAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTc > 2:3469576/1‑148 (MQ=255) tCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCa > 2:3302258/1‑148 (MQ=255) aaCGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGa < 2:3347386/148‑1 (MQ=255) aCGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGAc < 1:2120938/148‑1 (MQ=255) ccTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCtt < 2:1595002/148‑1 (MQ=255) ccTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCtt > 1:3504811/1‑148 (MQ=255) cTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTc < 1:1530800/148‑1 (MQ=255) aGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCggg < 1:184887/148‑1 (MQ=255) aaTACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGa > 2:3087982/1‑148 (MQ=255) aTACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGat < 1:2088003/148‑1 (MQ=255) tACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGata < 1:2364234/148‑1 (MQ=255) tACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGAGGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGata < 2:2060155/148‑1 (MQ=255) cTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATc > 2:1451118/1‑148 (MQ=255) tttACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCg > 2:2248195/1‑148 (MQ=255) tttACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCg < 2:258836/148‑1 (MQ=255) tttACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCg < 2:618053/148‑1 (MQ=255) aCTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGt < 2:1215102/148‑1 (MQ=255) ggggCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTaa < 2:529018/148‑1 (MQ=255) ggggCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTaa < 1:2466177/148‑1 (MQ=255) ggggCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTaa < 1:2466252/148‑1 (MQ=255) gggCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAg < 1:2880485/148‑1 (MQ=255) aTCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCa > 2:578067/1‑148 (MQ=255) tCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCAc < 2:1990554/148‑1 (MQ=255) cAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACt < 1:2168155/148‑1 (MQ=255) aaCGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACtt < 1:398009/148‑1 (MQ=255) aCGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACttt < 2:1621105/148‑1 (MQ=255) aCGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACttt < 2:384829/148‑1 (MQ=255) aCGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACttt < 1:3454501/148‑1 (MQ=255) aCGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACttt < 1:3058746/148‑1 (MQ=255) cGATAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACtttt > 1:1022692/1‑148 (MQ=255) cGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACtttt < 1:3040405/148‑1 (MQ=255) gagaATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACttttt > 1:2246973/1‑148 (MQ=255) agaATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACtttttt > 2:3098328/1‑148 (MQ=255) agaATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACtttttt > 2:1726659/1‑148 (MQ=255) agaATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACtttttt > 1:2882740/1‑148 (MQ=255) gaATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACTTTTTTc > 1:294153/1‑148 (MQ=255) | CTTTCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACTTTTTTC > CP009273/58578‑58866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |