| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 59,320 | A→T | 100% | intergenic (+41/+367) | yabP → / ← rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 59,320 | 0 | A | T | 95.5% | 615.9 / 13.6 | 199 | intergenic (+41/+367) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (7/2); new base T (102/88); total (109/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 199 total aligned reads displayed.
CAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATC > CP009273/59177‑59462 | cAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAg < 2:2312803/148‑1 (MQ=255)cAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAg < 2:642979/148‑1 (MQ=255) aaaaaTTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGt > 1:2270657/1‑148 (MQ=255) aaaaaTTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGt > 1:1975334/1‑148 (MQ=255) aaaaTTGATAGTAAAGTAGTTGCTAATGTAGAAGTTGCTACTAAAAATGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTg < 2:2194437/148‑1 (MQ=255) aaaaATGATACAAAAGCAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATAGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTg > 2:2837246/1‑148 (MQ=255) aaaTTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTgg > 2:390923/1‑148 (MQ=255) aaTTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTggg < 2:86008/148‑1 (MQ=255) aTTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGga > 2:248366/1‑148 (MQ=255) tGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGgatg > 2:2001911/1‑148 (MQ=255) aTACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGgatgat < 2:619821/148‑1 (MQ=255) aTACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGgatgat > 2:1075072/1‑148 (MQ=255) aTACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGgatgat < 2:53097/148‑1 (MQ=255) aTACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGgatgat < 2:53237/148‑1 (MQ=255) aTACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGgatgat > 2:1543325/1‑148 (MQ=255) tACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGAtt > 2:2896863/1‑148 (MQ=255) aaaGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTcac > 1:255631/1‑148 (MQ=255) aaaGGAGTTGCTACTGAAGAAGTCGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTcac > 1:1737964/1‑148 (MQ=255) aaGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGCAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTcaca < 1:193024/148‑1 (MQ=255) aGGAGTTGCTACTGAAGAAGGTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACaa < 2:2355892/148‑1 (MQ=255) ggAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAAt > 1:3120960/1‑148 (MQ=255) ttGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGa > 1:2497902/1‑148 (MQ=255) gCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGaaa > 2:3150614/1‑148 (MQ=255) cTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAg < 2:1597317/148‑1 (MQ=255) aCTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGATTAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGAc < 1:917347/148‑1 (MQ=255) tGAAGAAGTTTCTACTAAAAAAGTACTGCTTAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCt < 2:1540663/148‑1 (MQ=255) taagatgTTGCTAAAAAAAAAGTACTGCTCAAAAAATTACTGACACCGCAATTATTTAATGACCCATAATAAGCTACGGTTGACGGGGCTGGACCGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTg < 1:1518857/147‑1 (MQ=255) gaagaaGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTg > 1:1137132/1‑148 (MQ=255) aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTACGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGc < 1:1370097/148‑1 (MQ=255) agaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCa < 2:699960/148‑1 (MQ=255) gaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCat > 2:1025020/1‑148 (MQ=255) aagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCatg > 2:2648040/1‑148 (MQ=255) aagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCatg > 2:2648006/1‑148 (MQ=255) aagTTGCTAATAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCACAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCatg < 1:1806207/148‑1 (MQ=255) gTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCatgat < 1:295487/148‑1 (MQ=255) ttGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCatgatg > 2:2727187/1‑148 (MQ=255) actaAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTa > 1:1566286/1‑148 (MQ=255) actaAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTa > 1:813538/1‑148 (MQ=255) ctaAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTag < 2:1137132/148‑1 (MQ=255) taAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTaga > 2:1451835/1‑148 (MQ=255) aaaaaGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAgaga < 2:322227/148‑1 (MQ=255) aaaaGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGagaa < 2:2792058/148‑1 (MQ=255) aaaGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACACTTAGAAAGACCTGCATGATGAGCTAGagaag > 2:2900229/1‑148 (MQ=255) aGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAagag < 1:482176/148‑1 (MQ=255) tACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGc < 2:3393063/148‑1 (MQ=255) aCTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCt < 1:2407061/148‑1 (MQ=255) aCTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCt < 1:2406495/148‑1 (MQ=255) tgctgAACAAATGACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTACGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAg < 1:1619479/148‑1 (MQ=255) ctgAACAAATTACTGACACCGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTg < 2:676024/148‑1 (MQ=255) tgAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGa > 2:2425953/1‑148 (MQ=255) cAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTACGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCa < 2:1654858/148‑1 (MQ=255) cAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCa > 1:1330015/1‑148 (MQ=255) cAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCa > 1:1330084/1‑148 (MQ=255) cAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCa > 2:1384590/1‑148 (MQ=255) aaaTTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCaa > 2:729843/1‑148 (MQ=255) aTTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAgg > 2:937742/1‑148 (MQ=255) aTTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAgg > 1:1533996/1‑148 (MQ=255) aTTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAgg > 2:1015497/1‑148 (MQ=255) tACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcg > 1:2363505/1‑148 (MQ=255) aCAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTg > 2:3124598/1‑148 (MQ=255) cGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAgg > 2:2867048/1‑148 (MQ=255) aaTTATTGAATGCGCCTGTATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGAGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGaca < 2:976188/148‑1 (MQ=255) attattGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGacac > 1:201580/1‑148 (MQ=255) tattGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACgg < 2:2966705/148‑1 (MQ=255) attGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGa > 1:2106127/1‑148 (MQ=255) tGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAACGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCCGGACACGGATCACCg > 2:3150860/1‑148 (MQ=255) gAATAAGCTAAGGTTGACGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATggg < 1:2995334/148‑1 (MQ=255) gAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATggg < 2:1779404/148‑1 (MQ=255) gAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATggg > 1:572369/1‑148 (MQ=255) aaGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATc > 2:2335376/1‑148 (MQ=255) aGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCg > 2:817231/1‑148 (MQ=255) cTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGCGATGGGCCTCGcc > 1:1134660/1‑148 (MQ=255) aGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAAc < 2:1632679/148‑1 (MQ=255) aGGTTGAAGGGGCTGGAACGCCCCTACAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAAc < 2:2080267/148‑1 (MQ=255) ggTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAAcc > 2:391649/1‑148 (MQ=255) gTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATTAGCTAGAGAAGATGCTAGTGACGCAAGGCGTCGTGCAGGACACGGTACACCGAGATGGGCATCGCCAACCa > 1:2645465/1‑148 (MQ=255) aaGGGGCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACt > 2:1637551/1‑148 (MQ=255) ggggCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGc < 1:613907/148‑1 (MQ=255) ggCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTa > 1:645924/1‑148 (MQ=255) ggCTGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTa < 1:103681/148‑1 (MQ=255) tGGAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAAtt > 2:3270699/1‑148 (MQ=255) gAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAg < 2:89409/148‑1 (MQ=255) gAACGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAg > 1:3432294/1‑148 (MQ=255) gAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAg > 2:3320892/1‑148 (MQ=255) aaCGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGc < 1:90230/148‑1 (MQ=255) cGCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGccc > 1:2328635/1‑148 (MQ=255) gCCCCTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCa < 1:542129/148‑1 (MQ=255) ccTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGa < 1:32085/148‑1 (MQ=255) ccTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGa < 1:3352837/148‑1 (MQ=255) ccTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGa < 1:2579278/148‑1 (MQ=255) ccTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGa < 1:2816482/148‑1 (MQ=255) ccTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGa > 2:2165515/1‑148 (MQ=255) cTTCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGaa > 2:253998/1‑148 (MQ=255) ttCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAAt > 1:2748258/1‑148 (MQ=255) ttCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAAt > 2:576412/1‑148 (MQ=255) ttCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAAt > 1:1489123/1‑148 (MQ=255) ttCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAAt > 1:1008529/1‑148 (MQ=255) tCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATa < 1:390923/148‑1 (MQ=255) tCAACCTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATa < 1:1130182/148‑1 (MQ=255) cTTAGCTGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAAt < 2:778076/148‑1 (MQ=255) | CAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATC > CP009273/59177‑59462 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |