| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,097,943 | T→A | 100% | N19Y (AAT→TAT) | csgE ← | curlin secretion specificity factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,097,943 | 0 | T | A | 95.3% | 745.0 / 18.5 | 235 | N19Y (AAT→TAT) | csgE | curlin secretion specificity factor |
| Reads supporting (aligned to +/- strand): ref base T (5/6); new base A (122/102); total (127/108) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 236 total aligned reads displayed.
GCACTGGGCCTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATTCCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTATAAAGATGCGT > CP009273/1097798‑1098088 | gCACTGGGCCTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATAcc < 1:1191891/148‑1 (MQ=255) gggCCTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTgcg > 2:2881839/1‑148 (MQ=255) ggCCTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTgcgg > 2:2286798/1‑148 (MQ=255) gCCTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATTCCCTgcggc > 2:3044833/1‑148 (MQ=255) ccTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTgcggcg > 1:1019134/1‑148 (MQ=255) ttCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTCTGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGacc > 2:358419/1‑146 (MQ=255) ttCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAAc > 1:251233/1‑148 (MQ=255) ttCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAAc > 2:1896874/1‑148 (MQ=255) tCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACa > 1:2380004/1‑148 (MQ=255) cATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAg > 1:2269043/1‑148 (MQ=255) aTTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGa > 1:538114/1‑148 (MQ=255) ttAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGaa > 1:1103109/1‑148 (MQ=255) ttAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGaa < 1:2872033/148‑1 (MQ=255) aTCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAAtt < 1:1715160/148‑1 (MQ=255) tCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTc > 2:2578870/1‑148 (MQ=255) gTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTg < 1:2934916/148‑1 (MQ=255) aCCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCcaca < 1:1977407/148‑1 (MQ=255) ccGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAAt > 1:2887071/1‑148 (MQ=255) ataGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAg < 2:2293209/148‑1 (MQ=255) tCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTa < 2:751257/148‑1 (MQ=255) cACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTaa < 2:1382880/148‑1 (MQ=255) cACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTaa < 1:125161/148‑1 (MQ=255) cACTTTCCCATTTAACACTAAAGGCTCGGTAAAAATCAACTCCAAAATAGCAAACAGAAAGGTCACTTAGAAATCCCGGGACTTCTACCTCAACGGCGTTAAGATACCCTCCGGCGAACACAAATTCAGCCGCCACAATCCAGccaaa > 2:1687668/1‑144 (MQ=255) cTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAAt > 1:602832/1‑148 (MQ=255) tttCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATa > 2:1700021/1‑148 (MQ=255) ttCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATaa > 1:1894064/1‑148 (MQ=255) ttCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATaa > 2:1037715/1‑148 (MQ=255) cccATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATTCCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACg < 2:3016170/148‑1 (MQ=255) ccATTTATCACTAAAGGCTCGGTAAAAATCATGGACAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATACTGCCGCCACAATCCAGCGTAAATAACGt > 1:3263952/1‑148 (MQ=255) tttATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTc > 1:2463511/1‑148 (MQ=255) tttATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTc < 1:66177/148‑1 (MQ=255) tttATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTc > 2:749681/1‑148 (MQ=255) ttATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCa > 2:1540981/1‑148 (MQ=255) tATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCAt < 2:2140165/148‑1 (MQ=255) tCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATgg < 2:1215237/148‑1 (MQ=255) tCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATgg < 1:461143/148‑1 (MQ=255) cACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGc < 2:96940/148‑1 (MQ=255) aCTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCt < 2:1666850/148‑1 (MQ=255) cTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCtt > 1:2139508/1‑148 (MQ=255) ggCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCg > 2:965985/1‑148 (MQ=255) ggCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCg > 2:2986847/1‑148 (MQ=255) ggCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCg > 2:3265488/1‑148 (MQ=255) aaaaTCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGtt > 1:1359115/1‑148 (MQ=255) aaaaTCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGtt > 1:2050582/1‑148 (MQ=255) aaaaTCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGtt > 1:3106404/1‑148 (MQ=255) aaaTCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTa < 2:2570745/148‑1 (MQ=255) aaTCATGGCCAATAGAAGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGCTACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTAt < 2:1965014/148‑1 (MQ=255) aTCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATc > 1:2509785/1‑148 (MQ=255) aTCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATc > 2:3442884/1‑148 (MQ=255) cATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGt < 1:408274/148‑1 (MQ=255) cATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGt > 1:366924/1‑148 (MQ=255) gCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGc > 2:656416/1‑148 (MQ=255) aaTAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCa < 1:2014351/148‑1 (MQ=255) aTAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATTCCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAg > 2:2871294/1‑148 (MQ=255) aTAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAg < 2:1648231/148‑1 (MQ=255) aTGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGaaa < 2:1548050/148‑1 (MQ=255) tGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAAc > 2:3383226/1‑148 (MQ=255) gAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAAcc > 1:2099544/1‑148 (MQ=255) aaCAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGc < 1:1932818/148‑1 (MQ=255) aaCAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGc > 1:2507852/1‑148 (MQ=255) aCAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCt < 2:773496/148‑1 (MQ=255) aCAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCt > 2:2221214/1‑148 (MQ=255) tATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTtgtg > 2:396000/1‑148 (MQ=255) aTGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTgtgt < 2:1833106/148‑1 (MQ=255) aTGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTgtgt > 1:835484/1‑148 (MQ=255) cAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGt > 1:2979509/1‑148 (MQ=255) aGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGtt < 1:406419/148‑1 (MQ=255) aGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGtt < 1:406445/148‑1 (MQ=255) ttAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGtttt < 1:3035073/148‑1 (MQ=255) ttAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGtttt < 2:2380004/148‑1 (MQ=255) aGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGtttttt < 1:750631/148‑1 (MQ=255) aGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGtttttt < 1:965985/148‑1 (MQ=255) aGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGtttttt < 2:2726289/148‑1 (MQ=255) gCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTa < 2:835104/148‑1 (MQ=255) cAATCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTAc > 1:1676167/1‑148 (MQ=255) aTCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACgg < 1:1428749/148‑1 (MQ=255) tCCCGGGACTTCTACCTCAACGGCGTGAAGATTCCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTGGTGTCCGGTTTTTTACGGc > 1:1488948/1‑148 (MQ=255) tCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGc > 1:353587/1‑148 (MQ=255) tCCCGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGc > 1:317589/1‑148 (MQ=255) cccGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCt < 2:2233715/148‑1 (MQ=255) ccGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTa < 1:2820366/148‑1 (MQ=255) ccGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTa < 1:677392/148‑1 (MQ=255) ccGGGACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTa < 2:2463511/148‑1 (MQ=255) gggACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTAtc > 1:2804447/1‑148 (MQ=255) gACTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTAtctt < 1:3148644/148‑1 (MQ=255) aCTTCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCAGGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTAtcttc < 2:2973889/148‑1 (MQ=255) tCTACCTCAACGGCGTGAAGATTCCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTg < 1:154568/148‑1 (MQ=255) tCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTg < 2:2084527/148‑1 (MQ=255) tCTACCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTg < 2:1296261/148‑1 (MQ=255) aCCTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGaaa < 2:1103109/148‑1 (MQ=255) ccTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGaaaa > 2:899728/1‑148 (MQ=255) ccTCAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGaaaa > 1:1798450/1‑148 (MQ=255) cAACGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGAt < 2:418285/148‑1 (MQ=255) aaCGGAGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGAtt < 2:2826720/148‑1 (MQ=255) aCGGCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATta > 2:1620644/1‑148 (MQ=255) gCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTATaa < 2:2511734/148‑1 (MQ=255) gCGTGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTATaa > 2:3164343/1‑148 (MQ=255) tGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTATAAAGa > 1:1377917/1‑148 (MQ=255) tGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTATAAAGa > 1:2662639/1‑148 (MQ=255) tGAAGATACCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTATAAAGa > 1:2659701/1‑148 (MQ=255) | GCACTGGGCCTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATTTATCACTAAAGGCTCGGTAAAAATCATGGCCAATAGATGAAACAGTATGGTCAGTTAGCAATCCCGGGACTTCTACCTCAACGGCGTGAAGATTCCCTGCGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTATAAAGATGCGT > CP009273/1097798‑1098088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |