| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,116,548 | T→A | 100% | intergenic (‑137/+150) | bssS ← / ← dinI | biofilm regulator/DNA damage‑inducible protein I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,116,548 | 0 | T | A | 99.0% | 659.1 / ‑2.5 | 200 | intergenic (‑137/+150) | bssS/dinI | biofilm regulator/DNA damage‑inducible protein I |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base A (89/109); total (91/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 201 total aligned reads displayed.
TTTTTCCATCATGGCCCCCTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTTAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCAC > CP009273/1116403‑1116691 | tttttCCATCATGGCCCCCTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTaaa < 1:3092632/148‑1 (MQ=255) tCCATCATGGCCCCCTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGAtt > 2:1926437/1‑148 (MQ=255) atcatGGCCCCCTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTtat > 1:276383/1‑148 (MQ=255) tcatGGCCCCCTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTtata < 1:256271/148‑1 (MQ=255) catGGCCCCCTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTatat > 1:2172205/1‑148 (MQ=255) atGGCCCCCTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCACTAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATg > 2:2093900/1‑148 (MQ=255) atGGCCCCCTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATg > 2:639825/1‑148 (MQ=255) ccTAATTCGTGTTACTAGACCACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTCAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATa > 2:2097343/1‑148 (MQ=255) ccTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATa > 2:1895780/1‑148 (MQ=255) tAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATaaa < 2:2172205/148‑1 (MQ=255) tAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATaaa < 1:2159303/148‑1 (MQ=255) aTTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAAc < 2:2151736/148‑1 (MQ=255) aTTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAAc > 2:2707567/1‑148 (MQ=255) tCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAg < 2:85636/148‑1 (MQ=255) cGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGc < 2:2081525/148‑1 (MQ=255) tACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGtc < 2:406988/148‑1 (MQ=255) aGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGtcattc < 2:2831704/148‑1 (MQ=255) cAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCata < 1:3303894/148‑1 (MQ=255) cAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCata < 1:1627736/148‑1 (MQ=255) aaCGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCatat < 2:2432796/148‑1 (MQ=255) aaCGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCatat < 2:3411374/148‑1 (MQ=255) aaCGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTAATTCatat < 1:1860995/148‑1 (MQ=255) gTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATAtttt < 2:308163/148‑1 (MQ=255) gTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATAtttt < 1:2765675/148‑1 (MQ=255) tATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGTGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATAtttttt > 1:1241486/1‑148 (MQ=255) tATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTTAAGATTTATATGAACAATAAAACAGCATGTCATTCATAtttttt > 2:2861020/1‑148 (MQ=255) tATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATAtttttt < 1:1406680/148‑1 (MQ=255) aTTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATAttttttt < 1:1088003/148‑1 (MQ=255) tCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAg < 2:3278609/148‑1 (MQ=255) aGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCat < 2:276383/148‑1 (MQ=255) aGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCat < 2:1537205/148‑1 (MQ=255) gTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCatat < 2:581976/148‑1 (MQ=255) tCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATtg > 1:191009/1‑148 (MQ=255) aTGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGc > 2:1922201/1‑148 (MQ=255) tGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCa > 2:765993/1‑148 (MQ=255) tGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCa > 1:986750/1‑148 (MQ=255) cGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAat < 2:103216/148‑1 (MQ=255) agTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAat < 2:3480085/147‑1 (MQ=255) ttttATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAattat > 1:2271592/1‑148 (MQ=255) ttttATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAattat < 1:1745828/148‑1 (MQ=255) ttttATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAattat > 1:36148/1‑148 (MQ=255) tATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTAtttt > 1:1914669/1‑148 (MQ=255) tCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGa < 1:279093/148‑1 (MQ=255) cTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAg < 2:2901040/148‑1 (MQ=255) aaGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGaa < 1:582611/148‑1 (MQ=255) aaGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGaa > 1:742927/1‑148 (MQ=255) aaGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGaa < 1:2642726/148‑1 (MQ=255) aGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAg < 1:3021753/148‑1 (MQ=255) cTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAg > 2:1245737/1‑148 (MQ=255) cTTCAGTATAAAAAAAAGTAAGGGAATTCACACAATTTTAAAAGGGTGAACCAGATAAATTTCTCCTTTAAAGAGGTATATGAACAATAAAACAGCATGACATTCATATTTTTGTAGCAAAGTGTGCATATATTTTGAGGAAGTGTAg > 2:724187/1‑148 (MQ=255) ttCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGa < 1:1550653/148‑1 (MQ=255) ttCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGa > 2:1321212/1‑148 (MQ=255) tCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGaa < 1:1477270/148‑1 (MQ=255) tCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGaa < 1:1568390/148‑1 (MQ=255) tCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGaa < 1:3227055/148‑1 (MQ=255) cAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGaaa > 2:183045/1‑148 (MQ=255) tataCCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAAttt < 1:3101652/148‑1 (MQ=255) ataCCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAAtttt < 2:2508846/148‑1 (MQ=255) taCCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTg < 1:417546/148‑1 (MQ=255) aCCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGt < 1:3123536/148‑1 (MQ=255) aCCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGt < 2:267264/148‑1 (MQ=255) cAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTAc > 2:822218/1‑148 (MQ=255) aagtaagGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCaa > 2:1585702/1‑148 (MQ=255) aagtaagGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCaa > 2:1948751/1‑148 (MQ=255) gtaagGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCaaaa < 1:28955/148‑1 (MQ=255) gtaagGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCaaaa < 1:2659825/148‑1 (MQ=255) gtaagGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCaaaa < 2:3427524/148‑1 (MQ=255) taagGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAAt > 1:3407239/1‑148 (MQ=255) taagGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAAt > 2:2522641/1‑148 (MQ=255) aagGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAAtt > 1:1965070/1‑148 (MQ=255) agGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTc > 1:1770640/1‑148 (MQ=255) ttCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCgtaagt > 1:929648/1‑148 (MQ=255) ccGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGtaaaa > 2:2727977/1‑148 (MQ=255) ccGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGtaaaa < 1:2640384/148‑1 (MQ=255) cGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGtaaaat > 1:1709160/1‑148 (MQ=255) cGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGtaaaat < 2:1695863/148‑1 (MQ=255) cGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGtaaaat > 2:497606/1‑148 (MQ=255) aaTTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGtaaaataa < 1:2419222/148‑1 (MQ=255) ttttAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATaaaaa > 1:3185210/1‑148 (MQ=255) ttttAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATaaaaa > 2:2948038/1‑148 (MQ=255) ttttAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATaaaaa > 2:3169803/1‑148 (MQ=255) ttttAAAGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATaaaaa < 1:333554/148‑1 (MQ=255) aaaGGGGGAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGcc < 1:2258314/148‑1 (MQ=255) gggggAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCggg > 2:3006230/1‑148 (MQ=255) ggggAAACAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCgggg > 1:2185482/1‑148 (MQ=255) aaaCAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGAc > 1:1461159/1‑148 (MQ=255) aCAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGAccc > 1:1383479/1‑148 (MQ=255) aCAGATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGAccc > 2:392605/1‑148 (MQ=255) ataTAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCgg < 1:1908846/146‑1 (MQ=255) ataTAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTAATTTTTTTTTAGAATATTGTGCATTTATTTTGAGTAAGTGTAGAAATTTTGTACTCAAAATTCGTAATTAAAATAAAAAAGCCGGGGCGACCCgg < 1:139040/146‑1 (MQ=255) gATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGc > 2:461024/1‑148 (MQ=255) gATAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGc > 2:2923303/1‑148 (MQ=255) aTAAATTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCa > 2:2650184/1‑148 (MQ=255) aaaTTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCaaa > 2:530637/1‑148 (MQ=255) aaaTTTCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCaaa > 1:1656252/1‑148 (MQ=255) aaaTTTCTGCTTTAAAGAATTATATGAACAATAAAACAGCATGTCATACATATTTTTTAAGAATATTGTGAAAAAATATTGATGAAGTGTAGAAATTATGTACTAAAAATTCGAAAGTAAAATAAAAAATCCGGGGCGACCCGGCaat > 2:2295688/1‑147 (MQ=255) ttCTGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCaaaaaaa < 2:1636337/148‑1 (MQ=255) tGCTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATc < 2:1475642/148‑1 (MQ=255) cTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCAc > 2:3368413/1‑148 (MQ=255) cTTTAAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCAc > 1:2294614/1‑148 (MQ=255) | TTTTTCCATCATGGCCCCCTAATTCGTGTTACTAGACAACGTTATTCGAGGTTCAATGCGTTTTTATCTGAAGCAACTTCAGTATACCAATAAGTAAGGGTATTCACCGAATTTTTAAAGGGGGAAACAGATAAATTTCTGCTTTTAAGATTTATATGAACAATAAAACAGCATGTCATTCATATTTTTTTAGCATATTGTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGGCAAAAAAAATCAC > CP009273/1116403‑1116691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |