| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,380,856 | C→T | 100% | intergenic (+27/‑121) | ycjF → / → tyrR | UPF0283 family inner membrane protein/aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,380,856 | 0 | C | T | 91.4% | 574.8 / 37.7 | 186 | intergenic (+27/‑121) | ycjF/tyrR | UPF0283 family inner membrane protein/aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (8/8); new base T (93/77); total (101/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
| Rejected as polymorphism: Polymorphic base substitution creates a homopolymer stretch. | |||||||||||
Only 100 of 187 total aligned reads displayed.
TTTGCCGCCCGCTGCCGTGGATTGACGATGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGA > CP009273/1380711‑1380999 | tttGCCGCCCGCTGCCGTGGATTGACGATGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCtt < 2:2473261/148‑1 (MQ=255) gCCGTGGATTGACGATGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGc > 1:2277980/1‑148 (MQ=255) ggATTGACGATGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGtt < 2:2008139/148‑1 (MQ=255) gATTGACGATGACAACCCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGttt < 2:40166/148‑1 (MQ=255) aTTGACGATGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGtttt > 2:290850/1‑148 (MQ=255) aCGATGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAGAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGACGTGCCCGTGTTTCCg > 2:3215208/1‑148 (MQ=255) cGATGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGt < 1:800056/148‑1 (MQ=255) tGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCtt > 2:71932/1‑148 (MQ=255) tGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCtt > 2:2646909/1‑148 (MQ=255) gACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCttt > 2:2346706/1‑148 (MQ=255) gACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCttt > 2:583791/1‑148 (MQ=255) cAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTtgt < 2:547461/148‑1 (MQ=255) cAAACCTCGCCTCGGGGATGTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTtgt < 1:405957/148‑1 (MQ=255) aaCCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTgtgt > 2:186297/1‑148 (MQ=255) aaCCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTgtgt > 2:1102442/1‑148 (MQ=255) aCCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTc > 2:3136304/1‑148 (MQ=255) aCCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTc > 2:1391272/1‑148 (MQ=255) ctcgcctcgGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCaa < 2:3117540/148‑1 (MQ=255) ctcgcctcgGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCaa < 2:2057547/148‑1 (MQ=255) tcgcctcgGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAAt > 2:2096769/1‑148 (MQ=255) tcgcctcgGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAAt > 2:826766/1‑148 (MQ=255) cgcctcgGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATg < 1:145892/148‑1 (MQ=255) cctcgGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGAt < 2:3009550/148‑1 (MQ=255) tcgGGGATTTCCGTCGTCAGGTTATCGGTCATTTTTAAGAAACGCTTCAAAAAGGCAACACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGAttg < 1:1516845/148‑1 (MQ=255) tcgGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGAttg > 1:1517222/1‑148 (MQ=255) cgGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGAttgt < 1:1251394/148‑1 (MQ=255) ggATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGa > 2:1030133/1‑148 (MQ=255) ggATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGa > 2:3293655/1‑148 (MQ=255) tttCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAg > 1:2558601/1‑148 (MQ=255) tCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGaa > 1:168395/1‑148 (MQ=255) ccGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGaaa > 1:3309414/1‑148 (MQ=255) cgtcAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCtt > 1:2116118/1‑148 (MQ=255) tcAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTcc > 1:1499051/1‑148 (MQ=255) tcAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTcc < 1:595798/148‑1 (MQ=255) aGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTg < 1:1357109/148‑1 (MQ=255) gCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGc > 2:1563752/1‑148 (MQ=255) aTCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATc > 1:3037245/1‑148 (MQ=255) gTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑aaa > 1:2098613/1‑148 (MQ=255) tCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAAt > 2:1766501/1‑148 (MQ=255) tCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAAt > 1:698277/1‑148 (MQ=255) ggTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAgt < 2:1542712/148‑1 (MQ=255) gTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAgtg > 2:141380/1‑148 (MQ=255) gTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAgtg > 1:493263/1‑148 (MQ=255) gTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAgtg > 1:809122/1‑148 (MQ=255) gaaagaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTc < 1:2411183/148‑1 (MQ=255) aaagaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑CAATAGTGTCa > 2:643938/1‑148 (MQ=255) aaagaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGAGTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCa > 2:2149471/1‑148 (MQ=255) aaagaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCa > 2:2420059/1‑148 (MQ=255) aaagaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCa > 2:658166/1‑148 (MQ=255) aagaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCat < 1:3186352/148‑1 (MQ=255) aagaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCat < 2:765766/148‑1 (MQ=255) aagaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCat < 1:3390792/148‑1 (MQ=255) aagaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCat < 2:1264274/148‑1 (MQ=255) agaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCata > 2:2472904/1‑148 (MQ=255) agaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCata > 1:712303/1‑148 (MQ=255) agaaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCata > 2:178431/1‑148 (MQ=255) aaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGNAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATatc < 1:1780842/148‑1 (MQ=255) aaaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATatc > 2:2220028/1‑148 (MQ=255) aaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATatca < 1:583791/148‑1 (MQ=255) aaCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATatca < 1:2346706/148‑1 (MQ=255) aCGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATatcat > 1:3027125/1‑148 (MQ=255) agatGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCTTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATatcatc < 2:1791188/145‑1 (MQ=255) tGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCata < 2:493263/148‑1 (MQ=255) ttaaaatGGCAAAAAGCCCAGCGAAAAATAATTCAATTTGGTGTGCTGTCCGGATTTTTTTTAGGCGTATTGCCCGTTTTTTCGTATTTGTGTCAATGTTTTTTTTAATTAAACTTCCTTGTATCCAAAATAGTGTCATATCATCata < 1:1391272/146‑1 (MQ=255) gCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCatat < 2:2558601/148‑1 (MQ=255) cAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATAtt > 2:2147520/1‑148 (MQ=255) aaaaGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTaa < 1:3067300/148‑1 (MQ=255) aaaGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAAt > 2:1919941/1‑148 (MQ=255) aaaGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAAt < 1:972615/148‑1 (MQ=255) aGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTg < 1:2887658/148‑1 (MQ=255) ggCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGt < 2:1189038/148‑1 (MQ=255) ggCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCTTTAGGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGt < 1:2747058/148‑1 (MQ=255) gCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGtt > 1:2027063/1‑148 (MQ=255) gCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGtt < 2:2454221/148‑1 (MQ=255) cAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTc < 2:2129292/148‑1 (MQ=255) cAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTc < 2:1704924/148‑1 (MQ=255) cAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTc > 1:2886094/1‑148 (MQ=255) cAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCAGATCATCATATTAAGTGTTc > 2:579439/1‑148 (MQ=255) aaaaCGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCt < 1:998038/148‑1 (MQ=255) aCGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCtttt < 1:3204957/148‑1 (MQ=255) cGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCttttt > 1:2926627/1‑148 (MQ=255) gCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGt > 1:2853545/1‑148 (MQ=255) gCGAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGt > 1:231492/1‑148 (MQ=255) gAAAAATAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGa < 2:386433/148‑1 (MQ=255) aaaaaTAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGaa > 2:25878/1‑148 (MQ=255) aaaaaTAATGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGaa > 1:3142825/1‑148 (MQ=255) ataatGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGtt < 1:988054/148‑1 (MQ=255) taatGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTc > 1:2310335/1‑148 (MQ=255) tGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCa > 1:493923/1‑148 (MQ=255) tGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCa > 2:1320696/1‑148 (MQ=255) tGCAATATCGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCa > 2:1320684/1‑148 (MQ=255) atCGGGTGCTGACCGGATATCTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTc > 1:3483317/1‑148 (MQ=255) cGGGTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTg < 1:1032336/148‑1 (MQ=255) ggTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGa < 1:1102442/148‑1 (MQ=255) ggTGCTGACCGGATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGa < 1:186297/148‑1 (MQ=255) tGACCGGATATTTTTCCGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AACTAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCt < 2:2277980/148‑1 (MQ=255) gATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGTTGAAGGTTCCCATGCGTCTGGAAGTCTTTtgtg > 2:2314845/1‑148 (MQ=255) gATATTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTtgtg > 2:3513057/1‑148 (MQ=255) atatTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGa < 1:3333443/148‑1 (MQ=255) atatTTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGa < 1:3268091/148‑1 (MQ=255) | TTTGCCGCCCGCTGCCGTGGATTGACGATGACAAACCTCGCCTCGGGGATTTCCGTCGTCAGCTTATCGGTCAGGTGAAAGAAACGCTGCAAAAAGGCAAAACGCCCAGCGAAAAATAATGCAATATCGGGTGCTGACCGGATATCTTTACGCCGAAGTGCCCGTTTTTCCGTCTTTGTGTCAATGATTGTTGACAGAAACCTTCCTGCTATCC‑AAATAGTGTCATATCATCATATTAATTGTTCTTTTTTCAGGTGAAGGTTCCCATGCGTCTGGAAGTCTTTTGTGA > CP009273/1380711‑1380999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |