Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 1,478,971 | G→A | 100% | E552K (GAG→AAG) | hrpA → | putative ATP‑dependent helicase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 1,478,971 | 0 | G | A | 98.6% | 711.3 / 0.1 | 220 | E552K (GAG→AAG) | hrpA | putative ATP‑dependent helicase |
Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (116/100); total (118/102) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Rejected as polymorphism: Polymorphic base substitution creates a homopolymer stretch. |
Only 100 of 223 total aligned reads displayed.
CGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATGGCAGGATATCTACACCC > CP009273/1478827‑1479115 | cgTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGt < 1:463644/148‑1 (MQ=255) cgTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGt > 1:1205893/1‑148 (MQ=255) cgTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGt > 1:2578126/1‑148 (MQ=255) tATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCt > 2:1230322/1‑148 (MQ=255) tATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCt > 2:1230632/1‑148 (MQ=255) aTGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTg < 2:2779955/148‑1 (MQ=255) aTGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTg < 2:1589009/148‑1 (MQ=255) tGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTtct < 2:1444967/148‑1 (MQ=255) aGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTcgcg < 1:1051411/148‑1 (MQ=255) aGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTcgcg < 1:1876047/148‑1 (MQ=255) aGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTcgcg < 2:2117738/148‑1 (MQ=255) gcgcAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGt < 2:2054581/148‑1 (MQ=255) aaaaCATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTtgtg < 1:2640504/148‑1 (MQ=255) aaaCATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGa < 2:1869965/148‑1 (MQ=255) aaaCATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGa < 1:1933733/148‑1 (MQ=255) aCATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAAt < 1:1228833/148‑1 (MQ=255) aCATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAAt > 1:267605/1‑148 (MQ=255) cATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATc < 2:1983257/148‑1 (MQ=255) tGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCtg < 1:877907/148‑1 (MQ=255) tGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCtg < 1:2634765/148‑1 (MQ=255) ggCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCtgt > 1:3462183/1‑148 (MQ=255) ggCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCtgt < 1:3263366/148‑1 (MQ=255) ggCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCtgt > 1:2956580/1‑148 (MQ=255) gCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCtgtg < 2:906820/148‑1 (MQ=255) gcgtgcgtGAGGCGATGATTCTCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGCTGGACAAACAGCAGGCATCGTACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTGTCTCGCGTTTGTGAATCTGTGGaa < 2:3200808/148‑1 (MQ=255) gcgtgcgtGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGaa < 1:470602/148‑1 (MQ=255) gcgtgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTAt < 1:874841/148‑1 (MQ=255) cgtgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATc < 2:2565649/148‑1 (MQ=255) cgtgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATc < 1:1082622/148‑1 (MQ=255) gtgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCt < 2:2338179/148‑1 (MQ=255) tgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCtt > 2:1325544/1‑148 (MQ=255) tgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCtt > 2:3155312/1‑148 (MQ=255) tgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCtt < 1:2233945/148‑1 (MQ=255) gAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTg < 2:1150672/148‑1 (MQ=255) aGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTgg > 2:574154/1‑148 (MQ=255) aGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTgg > 2:323670/1‑148 (MQ=255) aGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACAACGACGCTTCCACGACAAAAAGACTGACTTTCTCGCGATTGTGAATCTGTGGAATTATCTTgg > 2:2433226/1‑148 (MQ=255) gCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCg > 2:1036323/1‑148 (MQ=255) atgatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGCATTATCTTGGCGagc > 1:2133515/1‑148 (MQ=255) tgatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGagca > 2:2902897/1‑148 (MQ=255) aCGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAgg < 1:591535/148‑1 (MQ=255) ccGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCt > 2:1695765/1‑148 (MQ=255) cgcgCTCTCCATTCTGGATCCGCGCGAACGTCCGTTGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGGGTTTGTGATTCTGTGGAATTATCTTGGCGAGCAGCAAAATGCGCtt < 2:3466802/148‑1 (MQ=255) cgcgCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCtt < 2:1100706/148‑1 (MQ=255) cgcTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTttc < 1:1901120/148‑1 (MQ=255) cgcTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTttc > 1:2834800/1‑148 (MQ=255) tctcCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTttcttc > 1:968692/1‑148 (MQ=255) ctcCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTcc > 2:826439/1‑148 (MQ=255) ctcCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTcc > 1:1015216/1‑148 (MQ=255) tcCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCa > 1:2315628/1‑148 (MQ=255) ccATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCaa < 2:928586/148‑1 (MQ=255) cATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAAc > 2:3059634/1‑148 (MQ=255) aTTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGACTTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACg > 2:631236/1‑148 (MQ=255) aTTCAGGATCCGCACGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACg < 2:773398/148‑1 (MQ=255) aTTCAGGATCCGCACGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACg < 2:1466400/148‑1 (MQ=255) tCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGcc > 2:3077924/1‑148 (MQ=255) cAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCt > 1:488045/1‑148 (MQ=255) aGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCtt < 2:2578994/148‑1 (MQ=255) ggATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTc > 1:1543287/1‑148 (MQ=255) ggATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTc > 1:1541781/1‑148 (MQ=255) gATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGACTTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTcc > 2:951369/1‑148 (MQ=255) ccGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGAATTTCACGCGTTTGTGAATCTGTGGAATTAACTTTGCGAGCAGCAAAATGCGCTTTCTTCCAACGCCTTCCGTc > 1:846857/1‑148 (MQ=255) cgcgAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGcc > 1:2317538/1‑148 (MQ=255) cgcgAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGcc > 2:1797820/1‑148 (MQ=255) tCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGt > 1:3011729/1‑148 (MQ=255) ccGATGGACAAACAGCAGGCATCGGACGAAAAACAGCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATATTGGCGAGCAGCAAAAGGCGCTTTCGTCCAACGCCTTCCGTCGCCTGTGTCGTa < 2:2569521/148‑1 (MQ=255) aTGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTTAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCg < 2:1692678/148‑1 (MQ=255) tGGACAAACAGCAGGCATCGGACGAAACACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGa < 2:3399027/148‑1 (MQ=255) gACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGAtt > 2:3415294/1‑148 (MQ=255) aaaCAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTAtc > 2:1753923/1‑148 (MQ=255) aCAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTAtctc > 2:1237918/1‑148 (MQ=255) cagcagGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCa < 1:3169165/148‑1 (MQ=255) cagcagGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCa > 2:2804419/1‑148 (MQ=255) cagGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACt < 1:507264/148‑1 (MQ=255) cagGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACt > 2:471373/1‑148 (MQ=255) cagGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACt < 1:797457/148‑1 (MQ=255) cagGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACt > 1:2262962/1‑148 (MQ=255) ggCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTACAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTAt > 1:2655530/1‑148 (MQ=255) gCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATc < 2:479449/148‑1 (MQ=255) gCATCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATc < 1:3077924/148‑1 (MQ=255) aTCGGACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCtg > 1:1778252/1‑148 (MQ=255) gACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCtgcgcg > 1:3355234/1‑148 (MQ=255) gACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCtgcgcg > 1:171230/1‑148 (MQ=255) gACGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCtgcgcg < 2:125008/148‑1 (MQ=255) gACGAAAAACATCGTCGCTTACACGACAAAAAGTCTGACTTTCTCGGGTTTGGGAAACTGTGGAATTATAGTGGCGAGCAGCAAAACGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTGGTACCGATTATCTAAACTAACtgcgcg > 1:3287967/1‑148 (MQ=255) aCGAAAAACATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCtgcgcgt < 2:3225642/148‑1 (MQ=255) aaaaaCATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGGTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCtgcgcgtgcg > 2:3296673/1‑148 (MQ=255) aaCATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGa < 2:1283115/148‑1 (MQ=255) aaCATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGa < 2:899269/148‑1 (MQ=255) aaCATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGa < 1:1978503/148‑1 (MQ=255) aaCATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGa < 1:486421/148‑1 (MQ=255) aCATCGTCGCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGaa < 2:267605/148‑1 (MQ=255) cgtcgCTTCCACGACAAAAAGTCTGACTTTATCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTATTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATTGc > 2:2844844/1‑148 (MQ=255) cgCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATGGCAgg > 1:215186/1‑148 (MQ=255) cgCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATGGCAgg > 1:1400357/1‑148 (MQ=255) cgCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATGGCAgg > 2:2411568/1‑148 (MQ=255) cgCTTCCACGACAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATGGCAgg < 2:1205893/148‑1 (MQ=255) cAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATGGCAGGATATCTACAcc > 1:2585570/1‑148 (MQ=255) cAAAAAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATGGCAGGATATCTACAcc > 1:769760/1‑148 (MQ=255) aaaaAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATGGCAGGATATCTACAccc > 2:1137727/1‑148 (MQ=255) | CGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTGGCGAGCAGCAAAAGGCGCTTTCTTCCAACGCCTTCCGTCGCCTGTGTCGTACCGATTATCTCAACTATCTGCGCGTGCGCGAATGGCAGGATATCTACACCC > CP009273/1478827‑1479115 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |