| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,512,106 | G→T | 100% | E68* (GAA→TAA) | ydcY → | uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,512,106 | 0 | G | T | 96.1% | 627.9 / 10.9 | 214 | E68* (GAA→TAA) | ydcY | uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (3/7); new base T (109/93); total (112/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 214 total aligned reads displayed.
CATTGCCCATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACGAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAGATATCCAGC > CP009273/1511961‑1512250 | cATTGCCCATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTaa > 1:1394415/1‑148 (MQ=255) ttGCCCATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACa < 1:436525/148‑1 (MQ=255) ttGCCCATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACa < 1:1709393/148‑1 (MQ=255) ttGCCCATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACa > 2:2762766/1‑148 (MQ=255) gCCCATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGt < 1:1316824/148‑1 (MQ=255) gCCCATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACGAACAGt < 2:2746612/148‑1 (MQ=255) ccATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTa > 1:761094/1‑148 (MQ=255) ccATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTa < 1:1004611/148‑1 (MQ=255) cATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTaa > 2:2335992/1‑148 (MQ=255) cATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTaa < 2:1765820/148‑1 (MQ=255) atatGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGACGATATGGAAGCGCGCCACTAACAGTTAAc < 1:2354779/148‑1 (MQ=255) tatGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAAcc > 1:3475622/1‑148 (MQ=255) tatGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAAcc > 2:2267463/1‑148 (MQ=255) tGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCaa < 2:1339898/148‑1 (MQ=255) aaCGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAg < 2:2519378/148‑1 (MQ=255) aCGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAgg > 2:2963192/1‑148 (MQ=255) attattAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAggcggc > 1:1400375/1‑148 (MQ=255) attattAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACGAACAGTTAACCAAAggcggc < 1:2182724/148‑1 (MQ=255) ttattaATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCa > 1:3426886/1‑148 (MQ=255) ttattaATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCa > 2:3309637/1‑148 (MQ=255) ttattaATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCa > 1:1538793/1‑148 (MQ=255) attaATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCAcc > 2:3410360/1‑148 (MQ=255) taATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCAt > 1:624428/1‑148 (MQ=255) aaTCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATc < 1:328537/148‑1 (MQ=255) tCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCct > 1:1934218/1‑148 (MQ=255) tCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCct > 1:2591563/1‑148 (MQ=255) ccTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGa < 1:2858297/148‑1 (MQ=255) cTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGAt < 1:1680067/148‑1 (MQ=255) cGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTaaaa > 1:1617621/1‑148 (MQ=255) aTGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATg > 1:19916/1‑148 (MQ=255) tGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACCGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGa < 2:3388799/148‑1 (MQ=255) tGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGa < 1:844408/148‑1 (MQ=255) tGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACGAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGa > 1:2720387/1‑148 (MQ=255) aCGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGc < 1:493992/148‑1 (MQ=255) cgcgGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCg < 1:1751690/148‑1 (MQ=255) aGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTgg > 2:1336054/1‑148 (MQ=255) ttAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCt > 1:3430446/1‑148 (MQ=255) tCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTaccaa > 2:975299/1‑148 (MQ=255) tCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTaccaa > 1:1850164/1‑148 (MQ=255) cGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTaccaac > 2:600849/1‑148 (MQ=255) cGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTaccaac > 2:2367745/1‑148 (MQ=255) gggAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTaccaacc < 1:2959415/148‑1 (MQ=255) ggAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTaccaacca < 2:2730184/148‑1 (MQ=255) ggAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTaccaacca > 2:1808356/1‑148 (MQ=255) gAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAg > 2:875417/1‑148 (MQ=255) acacCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACca < 2:1620574/148‑1 (MQ=255) cacCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACcac > 1:995077/1‑148 (MQ=255) cagcaACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTaaa < 2:2039314/148‑1 (MQ=255) gcaACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAAt < 2:1856686/148‑1 (MQ=255) caACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAAtt > 1:1886036/1‑148 (MQ=255) caACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGG‑AGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTg > 2:2902130/1‑148 (MQ=255) cTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCca > 1:1500653/1‑148 (MQ=255) cacaGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAAt < 2:1939173/148‑1 (MQ=255) acaGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAAtt < 2:3430492/148‑1 (MQ=255) caGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTg < 2:3182029/148‑1 (MQ=255) aGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTgg > 2:1607551/1‑148 (MQ=255) cGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGc > 2:1341986/1‑148 (MQ=255) aTCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCg < 1:3442054/148‑1 (MQ=255) aTCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCg < 1:331695/148‑1 (MQ=255) aTCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCg > 1:2985672/1‑148 (MQ=255) cGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGaa < 2:1055119/148‑1 (MQ=255) cGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGaa > 2:1143722/1‑148 (MQ=255) cccATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGaaca < 2:19916/148‑1 (MQ=255) cccATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGaaca > 2:1109020/1‑148 (MQ=255) cccATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGaaca < 1:1106512/148‑1 (MQ=255) ccATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGaacaa < 2:2758510/148‑1 (MQ=255) ccATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGaacaa < 2:517017/148‑1 (MQ=255) cATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGaacaac > 1:337353/1‑148 (MQ=255) tCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGc < 1:2267463/148‑1 (MQ=255) cACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGcc < 2:1873561/148‑1 (MQ=255) aCGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGccc > 1:1587512/1‑148 (MQ=255) cGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCg > 1:801057/1‑148 (MQ=255) tCGCAAGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAACGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAg < 1:1685178/148‑1 (MQ=255) tCGCAAGCATAAAGAAGATAGGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAg < 1:2853934/148‑1 (MQ=255) cGCAAGAATAAAGAAGATAGGGAAGCGCGCCACGAACAGTTAACCAAAGGCGGCACCATCATCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCCCAACTAAAATTGCGCCACAAATGGGGCCGAACAACGCCCGTAGt < 1:1198552/148‑1 (MQ=255) aGCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAACGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTa < 1:2033671/148‑1 (MQ=255) gCATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATGAAAATGATCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTAc > 2:3513784/1‑148 (MQ=255) cATAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACg > 2:3193375/1‑148 (MQ=255) aTAAAGAAGATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGc > 2:407628/1‑148 (MQ=255) aTAAAGAAGATATGCAAGCGCGCCACTAACAGTTAACCAACCGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGc < 2:2862818/148‑1 (MQ=255) aagaagATATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCAt < 2:3364751/148‑1 (MQ=255) agaagaTATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATg > 2:1309105/1‑148 (MQ=255) agaagaTATGGAAGCGCGCCACGAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATg > 2:2601536/1‑148 (MQ=255) gaagaTATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGa < 2:639522/148‑1 (MQ=255) gaagaTATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGa < 2:1394415/148‑1 (MQ=255) gaagaTATGGAAGCGCGCCACGAACAGTTAACCAACGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGa < 2:1968203/148‑1 (MQ=255) aagaTATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGAAGTGGAACGCCATGAc > 1:2397321/1‑148 (MQ=255) agaTATGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACt > 2:172116/1‑148 (MQ=255) atatGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGc > 2:3028273/1‑148 (MQ=255) tGGAAGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGa < 2:1175429/148‑1 (MQ=255) gggACGCGCCCCACAAACAGTTAACCACAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCACCCACAAGTAAACTTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGa < 1:2654300/147‑1 (MQ=255) gAAGCGCTACACATACAGTTACAAAATGGCGTCACCTTCCTCTTATTTAAATGAGCGTCTTGATACAAACCTTCCTACAACCACAAGTAAAATTGCGACTATAATTTTGCCTAACAACGCACGTTGTGGTACGCCATGACTGCGGAAg < 2:341958/148‑1 (MQ=255) gAAGCGCGCCACTAACAGTTAACCAACGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAg < 1:2459753/148‑1 (MQ=255) aaGCGCGCCACTAACAGTTAACCAACGGCGGCACCATCCTCTTATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAGa < 1:1283329/148‑1 (MQ=255) aaGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAGa < 1:1283228/148‑1 (MQ=255) aGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACACGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAGat < 1:91423/148‑1 (MQ=255) aGCGCGCCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAGat < 1:3161575/148‑1 (MQ=255) cgcCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAGATATcc > 2:2492390/1‑148 (MQ=255) cgcCACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAGATATcc < 2:761382/148‑1 (MQ=255) cACTAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAGATATCCAGc > 2:3111653/1‑148 (MQ=255) | CATTGCCCATATGAACGAATTATTAATCGCCCTGAGCGATGACGCGGAGTTAAGTCGGGAAGATCGCTACACCCAGCAGCAACGTCTGCGCACAGCGATCGCCCATCACGGTCGCAAGCATAAAGAAGATATGGAAGCGCGCCACGAACAGTTAACCAAAGGCGGCACCATCCTCTGATTAAAATGAGCGTCTGGCTACCAACCAGGCGCCAACCACAAGTAAAATTGCGCCACAAATTGGGCCGAACAACGCCCGTAGTGGTACGCCATGACTGCGGAAGATATCCAGC > CP009273/1511961‑1512250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |