| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,586,509 | A→C | 14.8% | L64R (CTT→CGT) | hipB ← | antitoxin of HipAB toxin‑antitoxin system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,586,509 | 0 | A | C | 14.8% | 409.6 / 16.7 | 189 | L64R (CTT→CGT) | hipB | antitoxin of HipAB toxin‑antitoxin system |
| Reads supporting (aligned to +/- strand): ref base A (114/42); new base C (2/31); total (116/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.36e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 192 total aligned reads displayed.
GTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAACCAGTTTCATTGCAT > CP009273/1586362‑1586656 | gtgCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCaa < 2:2840804/148‑1 (MQ=255) tgCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAg < 2:734293/148‑1 (MQ=255) tgCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAg > 1:2544150/1‑148 (MQ=255) tgCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAg > 1:2773993/1‑148 (MQ=255) gcgcCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGa < 2:3353374/148‑1 (MQ=255) cggTTGGATAACTTCGTTAACTCGCCTACCCGGTGGTTTTTCATCCAAGTGACATTTTTTGGCATTACCACTCCAG‑TTTTTGGTGTTGTTTTGTTTCTGGCGAGGCTTTTTTCGCGTCGCATTGCGTCATTGAGAGTTCACGCGACTg < 2:479590/146‑1 (MQ=255) ttGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGGTTAGGCATTACCACTCCAG‑ATTTTGCTGGTCGGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTaa > 1:2480156/1‑148 (MQ=255) tGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTaaa > 1:699743/1‑148 (MQ=255) tGGATAACTTCTTAAACTCGCCTACCCGCTGGTTGTTCATCAATGTTAAAATTTTAGGAATTACCACTCCTG‑ATTTTGCTGTTCTTTTGTTTCTGGCGTGGCATTTTTCGCGTCGCATAGCGTCTTTGAGTGTACAAGCGACTGTaaa < 2:2540425/148‑1 (MQ=255) gCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAAt > 2:3224316/1‑148 (MQ=255) tAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCt > 1:1644361/1‑148 (MQ=255) tAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCt > 1:2555883/1‑148 (MQ=255) aaCTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCtt > 1:245522/1‑148 (MQ=255) aaCTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCtt > 1:245636/1‑148 (MQ=255) acgtctttAACTCGCCTACCGGGTGTTTGTTCATAAAATTGAAATTTTTTGGATTTACCACTCCAT‑ATTTTGCTTTTCTGTTTATCCTGGCGTGGCTTTTTTCGCGTCGAATAGCGTCTTTTTTTTTTAAAGCGACTGTAAAATCTTa < 2:992987/142‑1 (MQ=255) cTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTaa > 1:1623630/1‑148 (MQ=255) cTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTaa > 2:581622/1‑148 (MQ=255) tCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTaaaa > 2:2296626/1‑148 (MQ=255) cGTTACCTCGCCTACCCGCTGGTTTTTCATCCAATTGACAAGTTTAGGCATTACCCCTCCAG‑ATTTTGCTGTTCTGTTGTTTCTGGCGAGGAATTTTTCGCGTCGCATAGCGTCTTTGAGAGTTAAAGCGACTGTAAAATCTTaaaaa < 2:239211/148‑1 (MQ=255) aCTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAATAATGTc > 2:274144/1‑148 (MQ=255) tCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGt > 2:1207084/1‑148 (MQ=255) cGCCTCCCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGAATTACCACTCCAG‑ATTTTGCTGTTGTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTAATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTg < 2:784576/148‑1 (MQ=255) gCCTCCCCGCTGTTTGTTAATACATGTTACATTTTTAGCAATTACCCCTCCAG‑TTTTTGCTGTTCTGTTGATTGTGGCGAGGCTTTTTTCGCGTCGAATAGCGAAATTGAGCGTTCACGCGACTGTAAAATCTTAAAAAATGTCGTGa < 2:2079450/148‑1 (MQ=255) aCCCGCTGGTTGTTCATCCAAGTGACAAGTTTCGGCATTACCACTCCAT‑TTTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGAATAGCGTATTGGAGTGTTCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGt < 2:791072/148‑1 (MQ=255) gCTGTTTGTTCAACCAAGTGACATTTTTAGGCATTACCACTCCAG‑ATTTTGGTGTTGTGTTGATTGTGGCGCGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTa < 1:2917584/148‑1 (MQ=255) gCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTa > 2:773182/1‑148 (MQ=255) gCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTa > 2:2650034/1‑148 (MQ=255) tGGTTGTACATCCACGTGACATGTTTAGGCATTACCACTCCAG‑TTTTTGCTGTTCTGTTGATTCGGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTAtt < 2:202461/148‑1 (MQ=255) tttgttAATCCAAGTGACAATTTTAGGAATTACCACTCCAT‑CTTTTGCTGTTCTGTTTATTCTGGCGCGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGt < 2:3177857/147‑1 (MQ=255) gttgttCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGt > 2:3041409/1‑148 (MQ=255) tCATCCATGTGACAAGTTTTGGATTTCCCACTCCAG‑TTTTTGCTGTTCTGTTTTTTCTGGCGAGGCATTTTTCGCGTCGCTTAGCGTAATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAggg < 2:710331/148‑1 (MQ=255) tCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAggg > 1:997686/1‑148 (MQ=255) aTCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGgtt > 1:2644514/1‑148 (MQ=255) tCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGgttg > 1:1731767/1‑148 (MQ=255) tCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGgttg > 2:3135129/1‑148 (MQ=255) tCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGgttg > 2:369975/1‑148 (MQ=255) ccAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGgttgt > 2:37349/1‑148 (MQ=255) aaGTCACAAGTTTAGGAATAACCACTCCAG‑TTTTTGCTGTTCTGTTGTTTGGGGCGAGGCATTTTCCGCGTCGCATAGCTTCATTGAGTGTACACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGttt < 1:1350096/148‑1 (MQ=255) aGTGACATGTTTAGGCATTACCACTCCAG‑TTTTTGGTGTTCTGTTGATTCTGGCGAGGCTTTTGCCGCGTCGCATAGCGTAATTGAGTGTTCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGtttt < 2:1048092/148‑1 (MQ=255) aGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGtttt > 2:2628878/1‑148 (MQ=255) gTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTc > 1:606001/1‑148 (MQ=255) aCAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGaa > 1:2818587/1‑148 (MQ=255) catgTTTCGGCTTTACCACACCAG‑TTTTGGCTGTTCTGTTGTTTCTGGCGCGGCTTTTTTCGCGCCGCTTCGCGTCATTGAGCGTTCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGaaa < 2:2949478/145‑1 (MQ=255) aatgTTTCGTCATAACCACTCAAGTATTTTG‑TGTTCTTTTGATTCTGGCGTGGCTTTTTCCGGTACGGATGGGGTGTTTTTGTTTTAAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGaaa < 2:32729/145‑1 (MQ=255) aGTTTAGGCATTACCACTCCAG‑TTTTTGCTGTTCTGTTGATTCGGGCGAGGCATTTTGCGCGGCGAATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAAtt < 2:1549071/148‑1 (MQ=255) gTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTg > 2:1609311/1‑148 (MQ=255) tttAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTgg > 1:3058846/1‑148 (MQ=255) ggaaTTACCACTCCAG‑TTTTTGCTTTTCTGTTGATTGTGGCGAGGCATTTTTCGCGTCGCATCGCGTCATTGAGAGTACAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAAt < 1:1731802/145‑1 (MQ=255) ggCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAAt > 1:1432134/1‑148 (MQ=255) aaTTACCACTCCAG‑TTTTTGCTGTTCTGTTGATTCTGGCGTGGATTTTTTCGCGTCGCATAGCTTCTTTGAGAGTTCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAAtcg < 1:2296716/147‑1 (MQ=255) aCCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGc > 2:1180553/1‑148 (MQ=255) aCCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGc > 2:2655257/1‑148 (MQ=255) ccACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGcc > 2:426362/1‑148 (MQ=255) aCTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATTGTCGCCTg > 2:1857702/1‑148 (MQ=255) cTCCAT‑TTTTTGCTGTTGTTTTGATTGTGGCGAGGCATTTTTCGCGTCGAATAGCGTCTTTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGc < 2:2193443/148‑1 (MQ=255) cTCCAG‑ATTTGGGTGTTCTTTTTTTTCGGGCTCGGCATTTTGCGCGTCGCATTGCGTCTTTGACATTACACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGc < 1:1303389/148‑1 (MQ=255) cTCCAG‑ATTTGGCTGTTCTGTTGATTCGGGCGCGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGc < 1:3162016/148‑1 (MQ=255) ccAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCtt > 1:1340637/1‑148 (MQ=255) cAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTa > 2:1208353/1‑148 (MQ=255) aG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTaa > 2:1095531/1‑148 (MQ=255) aG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTaa > 2:2848592/1‑148 (MQ=255) g‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAAt > 1:1017235/1‑148 (MQ=255) aTTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATa > 2:3008313/1‑148 (MQ=255) ttGCTGTTCTGTTGATTGTGGCGAGGAATTTTTCGCGTCGCATTGCGTCTTTGAGTGTTCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCa < 1:3211285/148‑1 (MQ=255) gCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAAt < 2:2496503/148‑1 (MQ=255) ctgttGATTCTGGCGTGGAATTGTTCGCGTCGCATAGCGTCTTGTAGAGTACACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAAttttttt < 1:1086305/148‑1 (MQ=255) ttGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGc > 2:2193444/1‑148 (MQ=255) ttGATTCGGGCGCGGAATTTGTCGCGGCGCATCGCGTCTGTGAGCGTCCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGc < 1:1270256/148‑1 (MQ=255) tGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGcc > 1:2101242/1‑148 (MQ=255) tcgggCGAGGATTTTGCCGCGTCGAATCGCGTCTTTGAGAGTTCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAgct < 1:171540/145‑1 (MQ=255) ggCGCGGCATTTTGCGCGTCGCATCGCGTCTTTGAGAGTACACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAgctcgc < 1:3259444/148‑1 (MQ=255) ggCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAgctcgc > 1:2200430/1‑148 (MQ=255) ggCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAgctcgc > 1:3324389/1‑148 (MQ=255) gAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGctct < 2:2290267/148‑1 (MQ=255) aGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTg > 1:334114/1‑148 (MQ=255) aGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTg > 1:3347546/1‑148 (MQ=255) ggCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGc > 2:1983221/1‑148 (MQ=255) aTTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGTGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTc < 1:2552285/148‑1 (MQ=255) ttttCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCa > 1:3409782/1‑148 (MQ=255) tgcgcgTCGAATCGGTTAATTTAGAGTACACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGc < 1:2686287/146‑1 (MQ=255) tgcgcgTCGAATAGCGTATTTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGc < 1:541383/146‑1 (MQ=255) gcgTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCAt < 2:1623704/148‑1 (MQ=255) cGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTg > 1:1896986/1‑148 (MQ=255) tAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAATTGTCGTGAGCGTGGTATTGTCAGGGTTGGTTTCGAAAATGGAAATCGTCGCCTGCTTAATACCAATTTATTTCGCCAGCTCGCTCTGCTTCCAGCCAATGTGCTgg > 2:3492356/1‑148 (MQ=255) tAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTgg > 1:34143/1‑148 (MQ=255) atcGTCATTGAGAGTTCAAGCGACAGTAAAATCATAAAAAATGTCGTGAGCGTGGAATTGTCAGGGTTGTTTTAGAAATAGGAAAAAGTCGCCAGCTTAATAACAATTTTTTTCGCCAGATCGATATTAGTCCAGCAAGTTTGCTgga > 2:1220053/3‑147 (MQ=255) aGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGc > 1:1694477/1‑148 (MQ=255) aGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGc > 2:2761485/1‑148 (MQ=255) cGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGa > 2:3287382/1‑148 (MQ=255) cGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGa < 2:1132906/148‑1 (MQ=255) tCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAAc > 1:1630750/1‑148 (MQ=255) cATTGTGAGTCCACGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAAcc < 1:55182/148‑1 (MQ=255) cATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAAcc > 1:188512/1‑148 (MQ=255) tttGAGAGTCCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAACCa < 1:2559238/147‑1 (MQ=255) aTTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAACCa > 2:2730839/1‑148 (MQ=255) ttGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAACCAg > 1:1809381/1‑148 (MQ=255) gagTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAACCAGTTTc > 2:633415/1‑148 (MQ=255) agTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAACCAGTTTCa > 2:1617597/1‑148 (MQ=255) agTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAACCAGTTTCa > 2:922605/1‑148 (MQ=255) ttCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCCTTTTGCTGGCGAACCAGTTTCAtt > 2:1519338/1‑148 (MQ=255) | GTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCAG‑ATTTTGCTGTTCTGTTGATTCTGGCGAGGCATTTTTCGCGTCGCATAGCGTCATTGAGAGTTCAAGCGACTGTAAAATCTTAAAAAATGTCGTGAGCGTGGTATTGTCAGGGTTGTTTTCGAAATTGGAAATCGTCGCCTGCTTAATACCAATTTTTTTCGCCAGCTCGCTCTGCGTCCAGCCATTTTGCTGGCGAACCAGTTTCATTGCAT > CP009273/1586362‑1586656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |