Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,641,167 A→T 94.3% intergenic (+173/+264) flxA → / ← intK Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,641,1670AT94.3% 649.3 / 23.0 209intergenic (+173/+264)flxA/intKQin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base A (5/7);  new base T (101/95);  total (107/102)
Fisher's exact test for biased strand distribution p-value = 5.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01

Only 100 of 211 total aligned reads displayed.

GCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAG  >  CP009273/1641023‑1641310
                                                                                                                                                |                                                                                                                                               
gCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTAtt                                                                                                                                              <  2:1760652/148‑1 (MQ=255)
gCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTAtt                                                                                                                                              >  2:1675339/1‑148 (MQ=255)
gCCACTTTTCGCCATCAGCCTTTTATTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTAtt                                                                                                                                              <  2:1761535/148‑1 (MQ=255)
    cTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGa                                                                                                                                          <  2:883297/148‑1 (MQ=255)
     ttttCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGaa                                                                                                                                         >  1:2011107/1‑148 (MQ=255)
     ttttCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGaa                                                                                                                                         >  1:371454/1‑148 (MQ=255)
     ttttCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGaa                                                                                                                                         <  1:3395992/148‑1 (MQ=255)
             aTCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTCTTATGAATTGCAACt                                                                                                                                 >  2:1834121/1‑148 (MQ=255)
              tCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTa                                                                                                                                <  2:1061816/148‑1 (MQ=255)
               cAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTAt                                                                                                                               <  1:2104835/148‑1 (MQ=255)
                 gCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTTAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTAttt                                                                                                                             <  2:311924/148‑1 (MQ=255)
                 gCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTAttt                                                                                                                             <  2:1611271/148‑1 (MQ=255)
                 gCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTAttt                                                                                                                             <  1:612406/148‑1 (MQ=255)
                 gCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTAttt                                                                                                                             <  2:2510166/148‑1 (MQ=255)
                  ccTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTc                                                                                                                            >  2:2462034/1‑148 (MQ=255)
                   cTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCt                                                                                                                           <  2:297091/148‑1 (MQ=255)
                   cTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAAAATTACAAGATATAAGTAATGTACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCt                                                                                                                           >  2:1373629/1‑148 (MQ=255)
                     tttCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGt                                                                                                                         >  2:1550835/1‑148 (MQ=255)
                      ttCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTa                                                                                                                        <  2:2424721/148‑1 (MQ=255)
                        cTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGt                                                                                                                      >  2:1974897/1‑148 (MQ=255)
                        cTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGt                                                                                                                      <  2:2084879/148‑1 (MQ=255)
                        cTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGt                                                                                                                      >  1:2187170/1‑148 (MQ=255)
                         tttAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTc                                                                                                                     <  2:1460970/148‑1 (MQ=255)
                          ttAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCa                                                                                                                    >  2:2614084/1‑148 (MQ=255)
                           tAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCAc                                                                                                                   <  1:1577389/148‑1 (MQ=255)
                           tAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCAc                                                                                                                   <  1:1578006/148‑1 (MQ=255)
                             aaGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACtt                                                                                                                 <  1:2261649/148‑1 (MQ=255)
                             aaGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACtt                                                                                                                 <  2:3314741/148‑1 (MQ=255)
                              aGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACttt                                                                                                                >  2:3190034/1‑148 (MQ=255)
                              aGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACttt                                                                                                                >  1:332963/1‑148 (MQ=255)
                              aGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACttt                                                                                                                <  2:342163/148‑1 (MQ=255)
                               gACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACtttt                                                                                                               >  2:1231133/1‑148 (MQ=255)
                                aCATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTtg                                                                                                              >  1:681568/1‑148 (MQ=255)
                                 cATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTtgt                                                                                                             >  2:1138056/1‑148 (MQ=255)
                                 cATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTtgt                                                                                                             <  1:2223312/148‑1 (MQ=255)
                                  atatTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATAATGAATTGCAACTATTTCTGTAGTCACTTTtgtg                                                                                                            >  2:77500/1‑148 (MQ=255)
                                         cTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAg                                                                                                     >  1:1757025/1‑148 (MQ=255)
                                         cTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAg                                                                                                     <  1:2618376/148‑1 (MQ=255)
                                          ttttTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGt                                                                                                    <  2:2880760/148‑1 (MQ=255)
                                          tttGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTTAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGt                                                                                                    <  1:853096/148‑1 (MQ=255)
                                           ttGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTc                                                                                                   >  2:579433/1‑148 (MQ=255)
                                           ttGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTc                                                                                                   >  2:2104894/1‑148 (MQ=255)
                                             gTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCca                                                                                                 >  1:3495532/1‑148 (MQ=255)
                                              tATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCcac                                                                                                >  1:414022/1‑148 (MQ=255)
                                               aTCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCcaca                                                                                               >  2:1600362/1‑148 (MQ=255)
                                                   tttCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAAc                                                                                           >  2:1866960/1‑148 (MQ=255)
                                                   tttCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAAc                                                                                           >  2:190177/1‑148 (MQ=255)
                                                    ttCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACt                                                                                          >  1:2204807/1‑148 (MQ=255)
                                                       tGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGcc                                                                                       >  1:2853142/1‑148 (MQ=255)
                                                        gATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCa                                                                                      <  2:2183570/148‑1 (MQ=255)
                                                         aTAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCaa                                                                                     <  2:3166760/148‑1 (MQ=255)
                                                         aTAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCaa                                                                                     <  1:2803033/148‑1 (MQ=255)
                                                             ttAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTc                                                                                 <  2:2537380/148‑1 (MQ=255)
                                                             ttAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTc                                                                                 >  1:1181418/1‑148 (MQ=255)
                                                             ttAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCAGGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTc                                                                                 <  2:2153062/148‑1 (MQ=255)
                                                                 cATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGct                                                                             >  1:153822/1‑148 (MQ=255)
                                                                   ttACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGcttc                                                                           >  1:1194538/1‑148 (MQ=255)
                                                                    tACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGcttct                                                                          >  1:1433588/1‑148 (MQ=255)
                                                                    tACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGcttct                                                                          <  1:2315705/148‑1 (MQ=255)
                                                                      cAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTg                                                                        <  2:3327716/148‑1 (MQ=255)
                                                                          atatAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGctct                                                                    <  1:3169588/148‑1 (MQ=255)
                                                                           tataAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCtt                                                                   <  2:2214024/148‑1 (MQ=255)
                                                                                gTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCgg                                                              >  2:789852/1‑148 (MQ=255)
                                                                                   aTGGACGCACGCCCAATGAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACa                                                           <  2:655965/148‑1 (MQ=255)
                                                                                    tGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACAt                                                          <  2:2525621/148‑1 (MQ=255)
                                                                                     ggACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACAtt                                                         <  1:2840290/148‑1 (MQ=255)
                                                                                        cGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGc                                                      >  1:1716115/1‑148 (MQ=255)
                                                                                          cACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCAt                                                    <  1:1675339/148‑1 (MQ=255)
                                                                                          cACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCAt                                                    <  2:520655/148‑1 (MQ=255)
                                                                                           aCTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATa                                                   <  2:3433740/148‑1 (MQ=255)
                                                                                            cTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAg                                                  >  1:2300801/1‑148 (MQ=255)
                                                                                            cTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAg                                                  <  1:2677440/148‑1 (MQ=255)
                                                                                              cccAATTAGTCTATTTAAATCGCCACAAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGc                                                >  2:1069952/1‑148 (MQ=255)
                                                                                              cccAATTAGTCTATTTAAATCGCCACAAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGc                                                >  2:3073554/1‑148 (MQ=255)
                                                                                              cccAATTAGTCTATTTAAATCGCCAAGAGTTTAACTGACAACCCATGATCGATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGATTCTTGCTCTTAGCGGACATTAGCATAGGc                                                >  2:3143647/1‑148 (MQ=255)
                                                                                                   ttAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTAttt                                           >  1:1392731/1‑148 (MQ=255)
                                                                                                   ttAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTAttt                                           >  1:2546025/1‑148 (MQ=255)
                                                                                                   ttAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTAttt                                           >  1:2088079/1‑148 (MQ=255)
                                                                                                    tAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTa                                          <  2:2777674/148‑1 (MQ=255)
                                                                                                        cTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCAt                                      >  1:2606673/1‑148 (MQ=255)
                                                                                                         tATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATa                                     <  1:1066497/148‑1 (MQ=255)
                                                                                                           tttAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAAc                                   >  1:913756/1‑148 (MQ=255)
                                                                                                           tttAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAAc                                   >  1:2588057/1‑148 (MQ=255)
                                                                                                            ttAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACg                                  >  1:1789918/1‑148 (MQ=255)
                                                                                                            ttAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACg                                  <  2:3288329/148‑1 (MQ=255)
                                                                                                             tAAATCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGc                                 >  1:416937/1‑148 (MQ=255)
                                                                                                              aaaTCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGcc                                <  1:843950/148‑1 (MQ=255)
                                                                                                                 tCGCCACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCa                             <  1:1826716/148‑1 (MQ=255)
                                                                                                                    ccACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTa                          <  1:2748541/148‑1 (MQ=255)
                                                                                                                     cACGAGTTTAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTAc                         >  1:1315411/1‑148 (MQ=255)
                                                                                                                            ttAACTGACAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCAcc                  >  1:550591/1‑148 (MQ=255)
                                                                                                                                   aCAACCCATGATCTATTATGGATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAga           <  1:1849347/148‑1 (MQ=255)
                                                                                                                                    cAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAgac          <  1:1679352/148‑1 (MQ=255)
                                                                                                                                    cAACCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAgac          >  1:2276883/1‑148 (MQ=255)
                                                                                                                                      aCCCATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAgactg        >  2:2785497/1‑148 (MQ=255)
                                                                                                                                       cccATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAgactga       <  1:1974897/148‑1 (MQ=255)
                                                                                                                                       cccATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAgactga       <  1:1630017/148‑1 (MQ=255)
                                                                                                                                         cATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAgactgact     >  2:388944/1‑148 (MQ=255)
                                                                                                                                         cATGATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAgactgact     <  2:2011107/148‑1 (MQ=255)
                                                                                                                                            gATCTATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAg  <  1:2932788/148‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                               
GCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAG  >  CP009273/1641023‑1641310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: