| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,673,380 | T→A | 11.1% | S233T (TCA→ACA) | ydgH → | DUF1471 family periplasmic protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,673,380 | 0 | T | A | 11.1% | 421.3 / 7.4 | 171 | S233T (TCA→ACA) | ydgH | DUF1471 family periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base T (61/87); new base A (6/16); total (67/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 181 total aligned reads displayed.
AGCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTG > CP009273/1673233‑1673527 | agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcat < 1:927868/148‑1 (MQ=255)agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcat < 1:931415/148‑1 (MQ=255) gCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcata > 1:363976/1‑147 (MQ=255) ggATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCaaaa < 2:2410686/148‑1 (MQ=255) ggATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCaaaa < 2:231439/148‑1 (MQ=255) ggATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCaaaa < 1:1845114/148‑1 (MQ=255) ggATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTGTGAAACCCAGTCATCaaaa > 1:2555754/1‑148 (MQ=255) gATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAg > 2:1134332/1‑148 (MQ=255) aTGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAgg < 2:1320333/148‑1 (MQ=255) aTCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCCTCAAAAggcgggc > 1:795554/1‑148 (MQ=255) tCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgggcg < 1:499139/148‑1 (MQ=255) tCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgggcg > 2:2926536/1‑148 (MQ=255) cccGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGTAACCCACTCATCAAAAGGCGGGCGt > 1:337809/1‑148 (MQ=255) cccGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGt < 2:1821284/148‑1 (MQ=255) cccGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGt < 1:1427105/148‑1 (MQ=255) cccGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGt < 1:2090930/148‑1 (MQ=255) cGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTa > 1:1086505/1‑148 (MQ=255) cAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTacac < 1:3253508/148‑1 (MQ=255) gATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCg < 2:1038676/148‑1 (MQ=255) aTTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGt > 2:909779/1‑148 (MQ=255) tCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCa < 2:61023/148‑1 (MQ=255) aaGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCt < 1:1009774/148‑1 (MQ=255) aGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTc > 1:3048450/1‑148 (MQ=255) gCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCCTCAAAAGGCGGGCGTTTCACCGTCACGCTcc > 2:2424956/1‑148 (MQ=255) gACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGa < 2:2308329/148‑1 (MQ=255) gACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGa > 2:3386957/1‑148 (MQ=255) gACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGa > 2:937014/1‑148 (MQ=255) gACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGa < 1:2391024/148‑1 (MQ=255) aCGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGAt > 2:118703/1‑148 (MQ=255) gCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCa < 2:1805754/148‑1 (MQ=255) gCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCa < 2:2325565/148‑1 (MQ=255) gCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCa < 2:15784/148‑1 (MQ=255) ctGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAg < 1:1873966/148‑1 (MQ=255) ctGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAg < 1:1986937/148‑1 (MQ=255) tGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCATTTAAAACAACTCATAAAAAGGCGGGCGTTAAAACGACACCCACCCCGAACGCACaaaatt > 1:136351/1‑146 (MQ=255) gTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACt < 1:3415666/148‑1 (MQ=255) tGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACCCTCCCGGATGGGACAAAAGTCGAAGAACTg > 1:75628/1‑148 (MQ=255) ggCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGa < 1:2110583/148‑1 (MQ=255) ggCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGa < 1:1952202/148‑1 (MQ=255) ggCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGa < 1:3314526/148‑1 (MQ=255) gCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGaa < 1:2772066/148‑1 (MQ=255) cGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAAc > 2:78023/1‑148 (MQ=255) cGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAAc > 2:78127/1‑148 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACaaa < 2:2253706/148‑1 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACaaa < 2:2253835/148‑1 (MQ=255) gCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACCCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAg > 1:512485/1‑148 (MQ=255) gCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCAGTCATCAAAAGGCGGGCCTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAg > 1:2278369/1‑148 (MQ=255) cgcgAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCg < 2:1736084/148‑1 (MQ=255) cgcgAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCg < 2:1525241/148‑1 (MQ=255) cgAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCAACAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAATCGAc > 1:3116241/1‑148 (MQ=255) aGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTGTTTTTAACCCACTCATCAAAAGGCGGGCGGTACACCGTCACCCGCCCGGATGGCACAAAAGTCGAAGAACAGAACAAAACCACCCCACCg > 1:2667712/1‑148 (MQ=255) tGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCCGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAACGCGACCGCAGCgatg < 2:3412588/148‑1 (MQ=255) tGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGTTGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCgatg < 2:3486545/148‑1 (MQ=255) tGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCgatg > 2:2630427/1‑148 (MQ=255) gagcTCCCGGTTGTTGCGCCTACCGCATCACCAAGTTCTGAAGTCGGTCGATTATTTGAAACCCAGTAATCAAAAGGGGGGCGTTACACCGTCACGCTCCGGGTTGGCACTAAAGTCGAATAACTGAACAAAGCGACCGCAGCgatga < 2:3408592/148‑1 (MQ=255) gagaTCCGGGGGGTTGCGACTACCGCATCACCATGTTGTGAAGTCGGTCGCTTATTTAAAACCCAGACATAAAATGGCGGGCTTTACACCGTCACGCTCCGGTATGGAACAAAAGGGCACTAACTGAACAACGCGACCGCAGCgatga < 2:669745/148‑1 (MQ=255) agaTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCgatgat > 2:146986/1‑148 (MQ=255) agaTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCgatgat > 1:1769464/1‑148 (MQ=255) gaTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAAACCAGTCATCCAAAGGCGCGCGTTACACCGTCACGCACCCGGCTGGCACAAAAGTCGAAGAACAGAACAAAGCGACCGCCGCGaagatg > 2:2115377/1‑148 (MQ=255) tCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCCGTCATCAAAAGGCGGGCGGTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAAATGAACAAAGCGACCGCAGCGATGATGGt > 1:1245832/1‑148 (MQ=255) cccGGGTGTTGCGACTACCGCATCACCATGTTCTGAAGTCGGTCGCTTCTTTGAGACCCAGTCATAAAAAGGGGGGGGTTACACCGCAAGGCTCCCGGATGGAACTACCGTGGACGAAGTCAACAACGCGACCGCAGCGATGATGGTc < 2:3060482/148‑1 (MQ=255) cccGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCCGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAACGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTc < 2:1997623/148‑1 (MQ=255) cccGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTc > 2:2810947/1‑148 (MQ=255) cGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCAAAAAAAGGCGGGCGTTACACCGTCAAGCTCCCCGATGGCCCTAAAGTAGAAGAACTGAACAAAGCGACCCCACCGAAGATGGTccc > 1:2744547/1‑148 (MQ=255) gggTTTTGCCACTACCGCATCACCTAGTGCTTAAGTGGGTCGATTCTTTAAACCCCATTCATAAAAAGGGGGGGTTTACACGGTCACGCTCCGGTATGGAACTAACTTCCAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCg < 2:2109078/148‑1 (MQ=255) ggTTTTGCGACTACCGCATCACCAAGTAGTGAAGTCGGTCGGTTCTTTTAAACCCAGTAATCAAAAGGCGGGCTTTACACCGTCACGCTCCCGTATGGCAATAATGTCTAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGt < 2:3249574/148‑1 (MQ=255) ggTGTGGCGACTACCGCATCACCTTGTTTTTTTGTGGGTGTCTAGTTGTAAACCCTGTCAAAAAATGGGGGGCTTTACACCGTCACGCTCGGGTTTGTCACTATAGTCTAATAACTAAACACCGCGACCGCAGCGATGATGGTCCCGt < 2:1508577/148‑1 (MQ=255) gtgtTGCGACTCCCGCATCACCATGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACCCCGACACGCTCCCGGATGGCACTAAAGTCCAACAACTGAACAACGCGACCGCAGCGATGATGGTCCCGtt < 2:702240/148‑1 (MQ=255) ttGCGACTCCCGCAACACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGCCAACAAAAGGCGGGCGTTACACCGACACGCCCCCGGATGGCACTAAAGACGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGa < 2:1774653/148‑1 (MQ=255) gACTACCGCCTCACCAAGTTCTGACGTCGGTCGCTTGTTTGAAACCCAGACATCAAATGGCGGGCGTTACACCGTCACGCTCCGGGTTGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGc < 2:363880/148‑1 (MQ=255) gACTACCGCATCACCATGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAATGGCGGGCGTTACACCGTCACGCTCCCGGAGGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGc < 2:1337550/148‑1 (MQ=255) aCCGCATCACCAAGTTCTGAAGTCGGTCGCTTGTTTTAAACCCAGTCATCAAAAGGCGGGCGGTTCACCGTCCCGCTCCCGGCTGGCACTAAAGTCGAAGAACTGTAAAAAGCGCCCGCAGCGATGATGGTCCCGTTCGACAGCAACa > 2:903432/1‑148 (MQ=255) aCCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCAACAAAAGGCGGGCGTTACACCGTCACGCTCCCGGCTGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCa > 2:1530216/1‑148 (MQ=255) cGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACCCCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCaaa < 2:2510696/148‑1 (MQ=255) cGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGGCACGCTCCCGGATGGCACTAAAGTCGAAGAACAGAACAAAGCGACCGCACCGATGATGGTCCCGGTCGACCGCATCaaa > 1:1183315/1‑148 (MQ=255) aacatttttCTGAAGTCGGTCGTTTCTTTTAACCCCAGAAAAAAAACGGCGGGCTTAACACCGTCACGCTCCCGGTTGCCACTACAGCCCAACAACTCAAAAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATtctc < 1:2448314/141‑1 (MQ=255) acaaaGTTCTGAAGTCGGTCGATTCTTTTAAACCCAGTCATAAAAAGGCGGGCGTTACACCTTAACGGTCCCGTATGGCACTAATGTCGAATAAATTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTctct < 2:2932575/145‑1 (MQ=255) aCCAAGTTCTGAAGTCGGTCGCTTCTTTGTAACCCAGTCAACAAAAGGCGGGCGTTACACCGTCACGCTCCCCGATGGCACGAAAGTAGAAGAACTGAACAAAGCGACCGCAGCGATGTTTGTCCCCGTCGACAGCATCAAAATatct > 1:3057209/1‑148 (MQ=255) ccattttCTGAAGTGGGTCGATTCTTTCAAACCCATTCATCAAACGGGGGGCGTTACCCGGTCACGCCCCGGGATGCAAATAATGCCCACTAACTCAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTg < 1:527000/143‑1 (MQ=255) cAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTgg > 2:3191356/1‑148 (MQ=255) tcggtcgCTTCTTTGAAACCCACTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCAACAAATTCTCTGGCAACTACGGCaa > 2:1977890/1‑148 (MQ=255) ggggtggCTTGTTTCAAACCCTTACATCAAATGGGGGGGGTTACACCGTCAGGCGCCGGGAGGGCACAAATGGCGAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCaa < 2:2659870/146‑1 (MQ=255) ctattattttAAACCAAGTAATAAAATGGCGGGCTTTACACCTTCACGCCCCCGGATGTCACTAAAGTCTAAGAACTCAAAAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGa < 1:2824921/142‑1 (MQ=255) gCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGAc > 2:2642666/1‑148 (MQ=255) cttcttTGAAACCCAGTCAAAAAAAGGCGGGCGTTACACCGTCCCGCCCCGGTTTGCCACAAAAGTCCAACAACTCAAAAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGAcc < 1:1134332/148‑1 (MQ=255) ttcttTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCg > 1:1172323/1‑148 (MQ=255) tcttTAACACCCAGCCATCAACCGGGGGGGTTAACACCGTCCCGCGCCGGTTTGCCAATAACCGCGAACACCTGAACACCGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGa < 1:118825/148‑1 (MQ=255) cttTAAACCCCAGAAATAAACTGGGGGGCGTAACACCGTCACGCGCCCGTTTGCCACTAAAGTCTAACAACTCAACACCGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGaa < 1:2359060/148‑1 (MQ=255) tGAAACCCAGTCATCAAATGGCGGGCGTTACACCGTCACGCTCCCGGAGGGCACTAAAGTCGAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtc < 2:3200150/148‑1 (MQ=255) gAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtct > 2:2344477/1‑148 (MQ=255) aaaCCCAGTCATCAAACGGCGGGCTTAACACCGTCACGCTCCCGGATGGCAATAAAGTCCAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtctc < 1:856610/148‑1 (MQ=255) aaaCCCAGTCATCAAACGGCGGGCGTTCCACCGTCCCGCTCCCGGATGGCACTACAGTCTAAGACCTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtctc < 1:559415/148‑1 (MQ=255) aaCCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTcc > 2:1690809/1‑148 (MQ=255) ccAGTCATAAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTAt < 2:2697404/148‑1 (MQ=255) ccAGACAACAAACGGCGGGGGTAACACCGCCACGCTCCCGGATGCCACTAACGACGAATAACTCAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTAt < 1:3244724/148‑1 (MQ=255) cAGTCATCAAAAGGCGGGCGTTACACCGACACGCTCCCGGATGGCACTAACGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATc < 2:2355357/148‑1 (MQ=255) aGTCAAAAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAATAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCa < 2:3029934/148‑1 (MQ=255) tcatcaAAAGGCGGGCGTTACACCGTAACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGGCTCCTATCAgc > 2:3452257/1‑147 (MQ=255) catcaAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGt < 2:774402/148‑1 (MQ=255) tcaAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGttt > 1:1747739/1‑147 (MQ=255) | AGCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTG > CP009273/1673233‑1673527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |