| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,222,656 | A→C | 23.8% | intergenic (+112/+261) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,222,656 | 0 | A | C | 23.8% | 92.7 / 2.0 | 72 | intergenic (+112/+261) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Reads supporting (aligned to +/- strand): ref base A (4/38); new base C (4/9); total (15/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.91e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCA > CP009273/2222509‑2222803 | cTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑Ca < 2:1106038/148‑1 (MQ=255)cTGGTGGTGACTGGCGTATCTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑Ca < 2:1103005/148‑1 (MQ=255) ggtggtGACTGGCGTATTTAAGATGATATTTTAAAATTAATTACTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAgg < 2:505567/148‑1 (MQ=255) gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCATGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑AAggg > 2:2453205/1‑148 (MQ=255) tggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAgggg < 1:2387852/148‑1 (MQ=255) gtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggc < 2:2085578/148‑1 (MQ=255) gtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggc < 2:2085430/148‑1 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggcgg‑c < 1:2923076/148‑1 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggcgg‑c < 1:134011/148‑1 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGggcgg‑c < 1:1640749/148‑1 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CCgggggggggccc > 2:1944760/1‑144 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGC‑G‑gggggggggggccc > 1:278953/1‑144 (MQ=255) gCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAAt < 2:1530579/148‑1 (MQ=255) gCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCGTCATATAAGCACTGGCGCAAGGAGCGCGG‑CCGGGGGGGG‑cccc > 2:1905444/1‑146 (MQ=255) gCGTATTTAAGATGATATTTTAAAAATAATTAAAGTCATCAGGTCCGAAAATAACTAGAATATTTCAGTCTCTCATCCTGTTGAGATCCTGTCATGTGCATTGCTTCATATAATCACTGGCTCAAGTAGCGC‑G‑CAGGGGGCGG‑CCAAt > 1:2596383/1‑148 (MQ=255) cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGG‑CGGGGGGGGG‑CCaaa > 2:1941081/1‑147 (MQ=255) cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑gggggggggggggcgg > 1:630893/1‑142 (MQ=255) cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑ggggggggggggcgcc > 2:1208981/1‑142 (MQ=255) cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑ggggggggggggccac > 2:2664390/1‑142 (MQ=255) cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CGGGGGGGGG‑cccagc > 2:1941198/1‑144 (MQ=255) tAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATcgccgcc < 1:1093013/148‑1 (MQ=255) aaGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATcgccgccg < 2:3147517/148‑1 (MQ=255) aaGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATcgccgccg < 2:3147535/148‑1 (MQ=255) atgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGG‑CGGGGGGGGG‑CCAA‑CGCgcccgccc > 2:2087802/1‑148 (MQ=255) atgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GGGGGGGGGG‑GCGAAAGCCCCCGccc > 2:1386597/1‑148 (MQ=255) tgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGcccc < 2:3470362/148‑1 (MQ=255) gatATTTTAAAATTAATTAAGGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGccccc < 2:2596383/148‑1 (MQ=255) tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCAGGGGGCGG‑CCACACccccccccccccccac > 2:26081/1‑144 (MQ=38) taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGG‑CGGGGGGGGGCCCAAGCCCCCCCCCCCCCCCCCCCCCCgc > 2:158647/1‑147 (MQ=255) taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GGGGGGGGGG‑GCCCCCGcccccccccccccccccccccccc > 1:1163202/1‑144 (MQ=255) taatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CGGGGGGGGG‑GCCAAAGCCGCCCCCCCCAGCCCCCCCCGGCGCTg > 2:2303928/1‑148 (MQ=37) taatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGGGG‑GCCAAAGCCGCGCCCCCCAGCACCCCCCGGcgcag > 2:555409/1‑144 (MQ=37) tcatcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GCGGGGGGGG‑CCCCCAGCCCCCGCCCCCCGCCCCCCCCCGCCCTGGCGaa > 2:2727731/1‑148 (MQ=255) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGAAAGGAGCGC‑G‑CTGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaaa < 2:1556884/148‑1 (MQ=255) tCCTAAAATAACGTTAATTTTTCTGTCTCTCATCCTGTTGCGCGCGTGTCTTGTGCATTGCTTCATATAATCAGTGGCGCATGGCGCGC‑G‑CTGGGGGCGG‑CAAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcg < 1:1801910/148‑1 (MQ=21) tCCTAAAATAACGAGAATATTTCTGTCTCTCATCGTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACGGGCGCAAGGAGCGC‑G‑CTGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcg < 1:3420224/148‑1 (MQ=21) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgcc < 2:576107/148‑1 (MQ=255) cGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCTTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCgg < 2:2915663/148‑1 (MQ=255) gataaTATTTCTGTCTCTCATCGTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑G‑CCGGGGGCGG‑CCAATCCCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGt < 2:309765/145‑1 (MQ=18) gataaTATTTCTGTCTCTCATCGTGTTGCGCTCCTGACATGTGCTTTGCTTCATTTAATCCCTGGCGCAAGGAGGGC‑G‑CTGGGGGCGG‑CAACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGt < 2:309787/145‑1 (MQ=18) aaTATTTCAGTCTCCCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTACATATAAGCACTGGCGCACGGAGCGC‑G‑CAGGGGGCGG‑CAAATCCCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGcc < 2:1538922/148‑1 (MQ=18) tttttCATTCTCTCATCGTTTTGCGCTCCTGTATTGTGATTTGCTTAATATAATCACGGGCCAATGGAGCGC‑G‑CCGGGGGCGC‑CAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt < 1:3466005/146‑1 (MQ=17) cAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt < 1:2347551/148‑1 (MQ=255) cAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTCGCGCAAGGAGCGC‑G‑CCAGGGGCGG‑CCAAACGCCCCCGCCCCCAGCACCCCCCCCCACAGGCGAAAAAAAAAACCCCAGCGCGGGGCCCACGGcc > 2:591159/1‑147 (MQ=255) cAGTCTCTCATCCTGTGGCGCTCCTGTCATGTGCTTTGCTTCATATAATCCCGGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt < 1:2347303/148‑1 (MQ=255) ggctctcATCCTGTTGCGCTCCTGTAATGTGATTTGCTTAATATAATCACTGGCGCAAGGAGCGC‑G‑CCGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGATGCGCGGTGCCCTCGGCTTa < 1:2330540/146‑1 (MQ=17) tctctcATCCTGTTGGGCTCCTGTCATGTGCATTGCTTCATATAATCAGTGGCGAAAGGAGCGC‑G‑CTGGGGGGGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAt < 2:1842605/148‑1 (MQ=18) tctctcATCCTGTTGCGCTCCGGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAt < 2:468521/148‑1 (MQ=255) ctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATc < 2:589199/148‑1 (MQ=255) ctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATc < 2:590382/148‑1 (MQ=255) cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑G‑CCGGGGGCGG‑CAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCtt < 1:1463150/148‑1 (MQ=255) aTCGTGTTGCGCTCTTTTATTGTGATTTTTTTAATATAATCAGGGGCGAATGGCGGGC‑G‑CGGGGGGCGC‑CAAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa < 1:1325395/148‑1 (MQ=2) tGTTGCGCTCCTGTCTTTTGATTTTCTTAATATAACCCCTGGCGCACGGCGCGC‑G‑CTGGGGGCGC‑CCAACCCCCCCCCCCCCCGCCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc < 1:141599/148‑1 (MQ=14) tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑G‑CCGGGGGCGG‑CCAAGCGCCGCCCCCCCGTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc < 1:2553271/148‑1 (MQ=17) tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc < 2:2630752/148‑1 (MQ=255) tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc < 2:2627470/148‑1 (MQ=255) tGTTGCGCTCCTGTAATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc < 2:2630757/148‑1 (MQ=255) cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCggg < 2:2356418/148‑1 (MQ=255) cTGTCATGTGCATTGCTTAATATAATCCCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCg < 2:2572359/148‑1 (MQ=255) gTCTTGTGCATTGATTCATATAATCCCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGC‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg < 2:2364256/148‑1 (MQ=255) tgtgCATTGATAAATATAATCACTGGCGCAAGGAGCGC‑G‑CCGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGcgcg < 1:1386597/148‑1 (MQ=255) atggCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 2:699481/145‑1 (MQ=255) tgataaatatAAGCCCGGGCGCACGGTGCGC‑G‑CCGGGGGCGC‑CCAAGCGCCGCCCCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAAc < 1:2990541/142‑1 (MQ=11) tGCTTAATATAACCCGTGGCGCATGGAGCGC‑G‑CGGGGGGCGC‑CCAACCGCCGCCCCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAAc < 1:2992462/148‑1 (MQ=11) cTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt < 2:430919/148‑1 (MQ=40) ttaatatAACCAGTGGCGCACGGAGGGC‑G‑CGGGGGGCGC‑CCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATc < 1:3376167/145‑1 (MQ=11) tataATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTg < 2:395660/148‑1 (MQ=37) aTCACTGGCGCATGGTGCGC‑G‑CTGGGGGCGG‑CCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaaa < 1:821254/148‑1 (MQ=255) aTCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaaa < 2:1847453/148‑1 (MQ=33) aCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg < 2:3496484/148‑1 (MQ=32) aCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg < 2:3496929/148‑1 (MQ=32) aCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg < 2:3500566/148‑1 (MQ=32) aCTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg < 2:3500980/148‑1 (MQ=32) ggCGCACGGAGGGC‑G‑CCGGGGGCGC‑CCAATCGCGGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc < 2:2090793/148‑1 (MQ=11) ggCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc < 2:321805/148‑1 (MQ=32) gaaaGGAGGGC‑G‑GCGGGGGGGG‑CAACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTTCCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:232842/146‑1 (MQ=11) g‑cAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATc < 2:3509434/148‑1 (MQ=32) cAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATcc < 2:1163207/148‑1 (MQ=32) aGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa < 2:1358952/148‑1 (MQ=32) | CTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CAGGGGGCGG‑CCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCA > CP009273/2222509‑2222803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |