Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,463,906 C→A 25.1% Q433K (CAA→AAA)  gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,463,9060CA25.1% 261.3 / 18.3 130Q433K (CAA→AAA) gtrSserotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand):  ref base C (24/66);  new base A (30/8);  total (56/74)
Fisher's exact test for biased strand distribution p-value = 5.19e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 136 total aligned reads displayed.

TAGTATCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATG  >  CP009273/2463760‑2464053
                                                                                                                                                   |                                                                                                                                                   
tagtaTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCa                                                                                                                                                    <  1:2628075/148‑1 (MQ=255)
    aTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGa                                                                                                                                                <  1:1668/148‑1 (MQ=255)
    aTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGa                                                                                                                                                <  2:1448114/148‑1 (MQ=255)
    aTCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGa                                                                                                                                                <  2:2296003/148‑1 (MQ=255)
      ctctTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTTTTTATAAAAAAAATAAAAGaaa                                                                                                                                              >  2:1377107/1‑148 (MQ=255)
       tctTTTTGGAATATCTCAATTTTATGTGTCAATTTTAGGGTAAGGATATAGAGATTTAATCAATCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAAt                                                                                                                                             <  1:2206049/148‑1 (MQ=255)
         tttttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCa                                                                                                                                           <  1:3193699/148‑1 (MQ=255)
          ttttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTTATTATTAAAAAAATAaaaaaaaaaaa                                                                                                                                           >  1:1047813/1‑145 (MQ=255)
          ttttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTTTTTTTAAAaaaaataaaaaaaataaa                                                                                                                                          >  1:2779267/1‑148 (MQ=255)
           tttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAGAAAACAAg                                                                                                                                         >  2:2607992/1‑148 (MQ=255)
            ttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                                                                                                        <  2:2297600/148‑1 (MQ=255)
            ttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                                                                                                        <  2:2963399/148‑1 (MQ=255)
             tGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTAATTTTTAAAATAAATAAAATAAATCAAGaa                                                                                                                                       >  2:1672191/1‑147 (MQ=255)
                aaTATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAATTAAAAAAAATaaaaaaaaa                                                                                                                                    >  2:712859/1‑142 (MQ=255)
                aaTATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAAt                                                                                                                                    <  2:472893/148‑1 (MQ=255)
                 atatCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAtaaataaaaaaaaaa                                                                                                                                   >  2:265924/1‑141 (MQ=255)
                   atCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATAAATCAATACaaaatc                                                                                                                                 >  2:2453069/1‑144 (MQ=255)
                    tctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCg                                                                                                                                <  2:1162553/148‑1 (MQ=255)
                    tctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCg                                                                                                                                <  2:1578472/148‑1 (MQ=255)
                     ctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTTTTTTTAAAAAAAATAAAAAAAAAAAAAACaaaaaaga                                                                                                                               >  1:3354154/1‑142 (MQ=255)
                       cAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATg                                                                                                                             <  1:2923804/148‑1 (MQ=255)
                          ttttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTAATTATTAAATAATTAAAAAAAATCAAAACAAAAGCGATTTaa                                                                                                                          >  2:2707337/1‑148 (MQ=255)
                          ttttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTAAAATAAATAAAGACAAAAGCGAAGTaa                                                                                                                          >  2:437933/1‑148 (MQ=255)
                            ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAAATTATAAAATAATTAAAATAAATAAAGACAATATCGATGTAAAg                                                                                                                        >  2:280575/1‑148 (MQ=255)
                             tATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATTAAATAATTCAAAGAAAAAAAAACAATATCGATTGAAAGc                                                                                                                       >  1:3221842/1‑148 (MQ=255)
                               tgtgTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACGTAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAc                                                                                                                     <  1:3468358/148‑1 (MQ=255)
                                  gtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTTTAAAAAAAATAAAAAAAAAAAAAAAAAAAACGATTTaaatgacaaa                                                                                                                  >  1:221296/1‑141 (MQ=255)
                                   tCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAg                                                                                                                 <  1:160173/148‑1 (MQ=255)
                                      tttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGttt                                                                                                              <  1:3151554/148‑1 (MQ=255)
                                       ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAAAAAATAAAAAAAAAAAATAAAATAGCGATGTAAATCACTAAGtttt                                                                                                             >  2:2440795/1‑147 (MQ=255)
                                       ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATATATAAAATAAAAAAAAAAAAAAACGATGTAAAGAACAAAGttat                                                                                                             >  2:676301/1‑146 (MQ=255)
                                       ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTa                                                                                                             <  1:3082677/148‑1 (MQ=255)
                                          tCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                                                                                                          <  2:1690119/148‑1 (MQ=255)
                                            ggtgAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTg                                                                                                        <  2:2005975/145‑1 (MQ=255)
                                                   gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTCAAAGAAATCAAGACAAAATCGATGTAAAGCACTAAGTTTAAATTTCGCGccc                                                                                                 >  2:3180987/1‑147 (MQ=255)
                                                   gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTTTTTATAAAAAAAATAAAAAAAAAAAAAAAAAAAAACCAGTAAAGCACAAAATTTAAATTTCGCGCCa                                                                                                 >  1:3378612/1‑148 (MQ=255)
                                                    atatAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCaa                                                                                                <  1:2406622/148‑1 (MQ=255)
                                                      ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAATTAAAAGAAATAAATAAAAAATCGATGTAAATCACTAAGTTTAAATTTCGCGCCaaaa                                                                                              >  2:3130174/1‑146 (MQ=255)
                                                      ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAAATTATAAAAAAATTGAAAGAAATAAACAAAAAAGCGATGGTAAACACTAAGTTTTAATTGCGGGCCAAta                                                                                              >  2:3268436/1‑147 (MQ=255)
                                                          agaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAAAAAAAAAAAAAAAACAAAAAAAAATAGATGTAAAGCACGAAATTTTAAAATCGCGCCAAACAAgg                                                                                          >  2:1191605/1‑148 (MQ=255)
                                                          agaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg                                                                                          <  1:996158/148‑1 (MQ=255)
                                                               tAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAAATTATAAAATAATTAAAATAAAAAAATAAAAAAACGAAGTAAAGCACAAATTTTAAAATTCGCGCCAAACAAGtcgcgc                                                                                     >  2:3213656/1‑148 (MQ=255)
                                                                  gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTATAAAATAAATAAAATAAAAAAAAAAAAAATATATTTAAAGAAAGAAATTTATATTTAGGGCCAAACATGGGGCGccca                                                                                  >  1:815341/1‑148 (MQ=255)
                                                                   caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATAAAAGAAAAAAATAAAAAAGCGATTTTAATCACTAAGTTTAAAATTAGCGCCAATAATTTCGCGCCCaa                                                                                 >  2:3442173/1‑148 (MQ=255)
                                                                    aagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTGGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAg                                                                                <  2:1089744/148‑1 (MQ=255)
                                                                    aagaaTTTATTTGGATTGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAg                                                                                <  2:1089854/148‑1 (MQ=255)
                                                                     agcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTTTAAAAAAAATAAAAAAAAAAAAAAAAAAAACCATGTAAAACACTAAATTTAAAATTAGGGCCCAACAAGGCGCGCCCaaca                                                                               >  1:1159442/1‑146 (MQ=255)
                                                                       caTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAGAAATAAAGACAATAGCTATGTAAAGAAATAATTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCta                                                                             <  1:1416532/148‑1 (MQ=255)
                                                                             tttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACCGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATAc                                                                       <  1:3473989/148‑1 (MQ=255)
                                                                               tGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTTTTTATAAAAAAAATAAAATAAAAAAAAAAAAAAACGTAGTAAATGAAAAATTTTAAATTTAGCGGCAAACAATGCGCGCCCAAGCGataataaaa                                                                     >  1:819317/1‑145 (MQ=255)
                                                                                  aaTGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAAcc                                                                  <  2:563802/148‑1 (MQ=255)
                                                                                    tGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTa                                                                <  2:728640/148‑1 (MQ=255)
                                                                                      tATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTGAAAAAAAACAAGACCAAAGCGATGTAAAGCACTAATTTTAAATTTCGCGCCACACATTGCGCGGACAACAGATAATAACaaacaaca                                                              >  2:2179503/1‑142 (MQ=255)
                                                                                       aTTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAAATTAAAAAATAATTACAATAAAAAAAGACAAAAGCGAAGTAAAGCACTAAATTTAAAATGCGCGCCAAACATGGGGCGCACCAACTATAATAAAAACATAAtt                                                             >  2:227892/1‑148 (MQ=255)
                                                                                        tttttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAAAAAATAAAATAAAAAAAAAAAAAATAGATGTAAAGCACAAAATTTAAAATTCGCCCCAAAAAATGCGCCCACAAACAATAAAACCAACCTAAatt                                                            >  2:1126970/1‑148 (MQ=255)
                                                                                             ctttcgACATTTGATTATACATAACATTGTTTTTTTTAATTTATAAAATAATTAAAAGAAATCAAGACAATAGCGATGTAAAGCACTAATTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcct                                                       <  1:1568243/146‑1 (MQ=255)
                                                                                               ttcgACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcc                                                     <  2:2454832/148‑1 (MQ=255)
                                                                                                tcgACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAATTCAAAAAAATAAACACCATATCGATGTAAAGCACGAAGTTTAAAATTAGCGCCAAAAAAGGCGCGCACAAGCTATAAAACCAACCTAAATTatactcct                                                    >  2:3222347/1‑148 (MQ=255)
                                                                                                 ctacattttCTTATACATAACATTCGTTTTTTTATTTTATAAAATAATAAAAATAAATCAATAAAATAGCGATGTAAAGCACTATTTTTAATTTGCGCGCCAATATTGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                   <  1:972274/143‑1 (MQ=255)
                                                                                                 cgACCTTTTCTTATACATAACATTCTTTTTTTTAATTAATAAAATAATTCAAATAAATCAAGACAATAGCGATGTAAAGCACTAATTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                   <  1:2707337/148‑1 (MQ=255)
                                                                                                 cgACCTTTGCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAAATCAAAGAAATCAAGACAATAGCGATGTAAAGCAATAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                   <  1:1103293/148‑1 (MQ=255)
                                                                                                 cgACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                   <  1:280575/148‑1 (MQ=255)
                                                                                                 cgACCTTTGATTATAAATAACAGTGTTTTTTTTAATTTATAAAATAATTAAAAGAAATCAAGACAATAGCGATGTAAAGCAATAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                   <  1:2707360/148‑1 (MQ=255)
                                                                                                 cgAACTTTGCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATAAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                   <  1:2706734/148‑1 (MQ=255)
                                                                                                      tttGCTTATACATAACAGTCGTTTTTTTAATTTATTAAAAAATTAAAATAAATCAAGAAAAAAGAGATTTAAATCACTAACTTTAAATTTCGCGCCAATCATGGCGCGCACAAGCTATAATAACAAACAAAATTATACACATCTTaga                                              >  2:3459530/1‑148 (MQ=255)
                                                                                                       ttGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAAAAAAAAAGACAAAAGCGTTGTAAATCAATAACTTTAAATTTAGCGGCAATAAATGCGCGCACAACCTATAAAAACAACCAAATTTATCCTCCTCTTagag                                             >  2:2594722/1‑148 (MQ=255)
                                                                                                        tGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGt                                            <  2:275684/148‑1 (MQ=255)
                                                                                                             ataCATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACta                                       <  1:1672191/148‑1 (MQ=255)
                                                                                                                 aTAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtc                                   <  2:3457641/148‑1 (MQ=255)
                                                                                                                  tAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtct                                  <  2:3060068/148‑1 (MQ=255)
                                                                                                                    aCAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTcc                                <  2:2769761/148‑1 (MQ=255)
                                                                                                                        tcttttttttAATTTATAAAATAATTAAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGAt                            <  1:3283516/145‑1 (MQ=255)
                                                                                                                           tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                         <  2:2919352/148‑1 (MQ=255)
                                                                                                                           tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                         >  2:1719151/1‑148 (MQ=255)
                                                                                                                             ttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCTATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGaa                        <  2:935873/148‑1 (MQ=255)
                                                                                                                             ttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGaa                        >  2:2099576/1‑148 (MQ=255)
                                                                                                                             ttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGaa                        >  1:2341208/1‑148 (MQ=255)
                                                                                                                                tttAATTTATAAAATAATTCAAAGAAATCAAGAAAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTg                     <  1:1564146/148‑1 (MQ=255)
                                                                                                                                 ttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGc                    >  2:971379/1‑148 (MQ=255)
                                                                                                                                  tAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCg                   >  1:3382031/1‑148 (MQ=255)
                                                                                                                                      ttACAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTAt               >  1:1407123/1‑148 (MQ=255)
                                                                                                                                        ataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTg             >  1:1622338/1‑148 (MQ=255)
                                                                                                                                        ataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTg             >  1:1622337/1‑148 (MQ=255)
                                                                                                                                        ataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTg             <  2:3414208/148‑1 (MQ=255)
                                                                                                                                        ataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTg             <  2:3415822/148‑1 (MQ=255)
                                                                                                                                         taAAATAATTAAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGa            <  1:1377107/148‑1 (MQ=255)
                                                                                                                                          aaaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc           >  1:3320331/1‑148 (MQ=255)
                                                                                                                                          aaaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc           <  1:422500/148‑1 (MQ=255)
                                                                                                                                          aaaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTACTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc           <  2:3009133/148‑1 (MQ=255)
                                                                                                                                           aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACt          <  2:2561426/148‑1 (MQ=255)
                                                                                                                                           aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACt          >  2:1956878/1‑148 (MQ=255)
                                                                                                                                              taatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc       >  1:2397013/1‑148 (MQ=255)
                                                                                                                                              taatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc       >  2:2194660/1‑148 (MQ=255)
                                                                                                                                               aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCa      >  1:1512880/1‑148 (MQ=255)
                                                                                                                                                atTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa     <  1:488529/148‑1 (MQ=255)
                                                                                                                                                atTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa     <  1:488546/148‑1 (MQ=255)
                                                                                                                                                atTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTAAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATCCCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa     <  1:488576/148‑1 (MQ=255)
                                                                                                                                                  tCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAAt   <  1:2991309/148‑1 (MQ=255)
                                                                                                                                                   cAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATg  <  2:1047813/148‑1 (MQ=255)
                                                                                                                                                   cAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATg  <  2:1049417/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TAGTATCTCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATG  >  CP009273/2463760‑2464053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: