| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,556,786 | G→T | 100% | intergenic (+310/‑165) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,556,786 | 0 | G | T | 97.5% | 631.5 / 5.9 | 203 | intergenic (+310/‑165) | yffP/yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (1/4); new base T (100/98); total (101/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 204 total aligned reads displayed.
TCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATT > CP009273/2556641‑2556930 | cacaATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCa > 2:1065101/1‑148 (MQ=255) tCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCACAGCCAACCAGTGGGGTGGTGAA‑TTTTGTTGTGGAGAtgg > 1:3390046/1‑146 (MQ=255) tCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCg < 1:1022114/148‑1 (MQ=255) cccGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCt < 1:667787/148‑1 (MQ=255) ccGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCtt < 2:447114/148‑1 (MQ=255) cATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAACCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCt < 2:5349/148‑1 (MQ=255) aTTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCtt < 2:662246/148‑1 (MQ=255) aTTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCtt < 1:2367153/148‑1 (MQ=255) ttATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTc < 2:3462001/148‑1 (MQ=255) ttATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTc > 2:1201922/1‑148 (MQ=255) tataTCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCa > 1:3177753/1‑148 (MQ=255) tCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGc < 1:2437083/148‑1 (MQ=255) tCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCa > 2:1673592/1‑148 (MQ=255) aCCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCAtt > 2:2223707/1‑148 (MQ=255) aCCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCAtt > 2:21008/1‑148 (MQ=255) aCCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAtt < 2:1388360/148‑1 (MQ=255) ccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCAtttt < 1:3018329/148‑1 (MQ=255) aTCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTg < 2:1299567/148‑1 (MQ=255) tttCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGttt < 2:103050/148‑1 (MQ=255) gTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACg > 1:3512555/1‑148 (MQ=255) gggAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaa < 1:286407/148‑1 (MQ=255) gggAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaa < 2:2184153/148‑1 (MQ=255) gggAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaa < 2:2185067/148‑1 (MQ=255) ggAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAACCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaaa < 1:207876/148‑1 (MQ=255) ggAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAACCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaaa < 1:3102807/148‑1 (MQ=255) cTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAg < 1:1531058/148‑1 (MQ=255) gATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAACCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGtt < 1:2181494/148‑1 (MQ=255) aTGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTc > 1:890470/1‑148 (MQ=255) aTGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTc > 1:317114/1‑148 (MQ=255) ggCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTccc < 2:1198471/148‑1 (MQ=255) ccgACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaa > 1:175019/1‑148 (MQ=255) ccgACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAACCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaa > 2:877624/1‑148 (MQ=255) gACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaaca > 2:593926/1‑148 (MQ=255) cGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaa > 1:1623089/1‑148 (MQ=255) tGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATa > 1:2477356/1‑148 (MQ=255) gCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAAAGAAAGGCAGTTCCCAACAACAAAATaa > 1:2810548/1‑148 (MQ=255) cacaATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATaaa > 2:173960/1‑148 (MQ=255) cacaATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATaaa > 2:1378348/1‑148 (MQ=255) cacaATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATaaa > 1:493163/1‑148 (MQ=255) ttGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATgg > 2:1602376/1‑148 (MQ=255) aTTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAg < 2:2757377/148‑1 (MQ=255) aTTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAg < 2:740501/148‑1 (MQ=255) aTTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAg < 1:380779/148‑1 (MQ=255) aTTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAg < 2:1925337/148‑1 (MQ=255) ttAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAgg > 1:1488341/1‑148 (MQ=255) ttAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAgg > 1:70105/1‑148 (MQ=255) tAATTTCTGAACATTC‑AAATCAACTACCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGt > 2:2788684/1‑148 (MQ=255) aaTTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTa < 2:2515463/148‑1 (MQ=255) aTTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACACCAAAATAAAGATGGGAGGTaa > 2:2301792/1‑148 (MQ=255) tCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaaa < 1:2141383/148‑1 (MQ=255) tCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaaa < 1:820918/148‑1 (MQ=255) tGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATg < 1:1210353/148‑1 (MQ=255) aaCATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGaa < 1:225674/148‑1 (MQ=255) aaCATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGaa < 1:2636952/148‑1 (MQ=255) aaCATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGaa < 1:2685034/148‑1 (MQ=255) aCATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGaaa > 1:3247353/1‑148 (MQ=255) ttC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACgg < 2:3117997/148‑1 (MQ=255) aaTCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTggg > 2:3475333/1‑148 (MQ=255) aaTCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTGTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTggg < 2:2591290/148‑1 (MQ=255) cAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAg < 1:139458/148‑1 (MQ=255) cAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAg > 2:1536259/1‑148 (MQ=255) aCTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTg > 2:271558/1‑148 (MQ=255) cTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTgg > 2:1648929/1‑148 (MQ=255) cTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTgg > 2:1703653/1‑148 (MQ=255) tCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGc < 1:3447075/148‑1 (MQ=255) cccACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCt < 1:2171241/148‑1 (MQ=255) cccACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCt < 1:2042449/148‑1 (MQ=255) cccACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCt > 2:3405156/1‑148 (MQ=255) ccaccaAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCtt > 1:1363360/1‑148 (MQ=255) caccaAAGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAAAAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCttt > 1:3072078/1‑148 (MQ=255) aaaGCCAACAAGATGGGAGGTGAATTTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACt > 1:3060311/1‑148 (MQ=255) aaaGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTg > 2:1894743/1‑148 (MQ=255) aaaGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTg > 2:1765653/1‑148 (MQ=255) aaaGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTg > 2:2282277/1‑148 (MQ=255) aaGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTgg < 2:2671732/148‑1 (MQ=255) aGCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGt > 2:809332/1‑148 (MQ=255) gCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTg < 1:1065101/148‑1 (MQ=255) gCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTg > 2:1359367/1‑148 (MQ=255) gCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTg < 1:777550/148‑1 (MQ=255) gCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTg < 1:1201922/148‑1 (MQ=255) gCCAACAAGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTg < 1:2537914/148‑1 (MQ=255) aacaaGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATg > 1:56357/1‑148 (MQ=255) aaGATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTa < 2:56357/148‑1 (MQ=255) gATGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAAt > 1:1272308/1‑148 (MQ=255) aTGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATg < 2:928238/148‑1 (MQ=255) aTGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATg > 2:317307/1‑148 (MQ=255) aTGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATg < 2:379476/148‑1 (MQ=255) tGGGAGGTGAA‑TTTTGTTATGCAGATCGCTTTTGCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGt < 1:611817/148‑1 (MQ=255) gAGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTgg < 2:2456640/148‑1 (MQ=255) aGGTGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGt < 1:1169003/148‑1 (MQ=255) tGAA‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg > 2:3217738/1‑148 (MQ=255) aa‑TTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCt > 2:2414918/1‑148 (MQ=255) tttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTACTGTTGGTTTGCTGTa > 1:469814/1‑148 (MQ=255) tttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTACTGTTGGTTTGCTGTa > 2:2147253/1‑148 (MQ=255) tttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTa < 1:3335868/148‑1 (MQ=255) tttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTa < 2:3177753/148‑1 (MQ=255) tttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTa > 2:1623566/1‑148 (MQ=255) ttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt > 1:3152583/1‑148 (MQ=255) ttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt > 1:1948108/1‑148 (MQ=255) ttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt > 1:1947938/1‑148 (MQ=255) | TCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAA‑TTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATT > CP009273/2556641‑2556930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |