Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 2,878,098 | T→A | 100% | A827A (GCA→GCT) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 2,878,098 | 0 | T | A | 96.0% | 625.3 / 12.2 | 201 | A827A (GCA→GCT) | ygcB | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
Reads supporting (aligned to +/- strand): ref base T (4/4); new base A (108/84); total (112/89) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.33e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 201 total aligned reads displayed.
CCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATC > CP009273/2877953‑2878241 | ccccTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGc > 2:1912200/1‑148 (MQ=255) ccccTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGc > 1:2396256/1‑148 (MQ=255) cccTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCa < 2:2816727/148‑1 (MQ=255) ccTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCaa > 2:1663725/1‑148 (MQ=255) tGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAgc > 2:790170/1‑148 (MQ=255) taGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCt < 1:1113504/148‑1 (MQ=255) taGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCt > 1:739597/1‑148 (MQ=255) ggTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCa > 1:3418514/1‑148 (MQ=255) aaTACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGt < 2:1695599/148‑1 (MQ=255) aCTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCa > 1:833852/1‑148 (MQ=255) cTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCAt < 1:1776528/148‑1 (MQ=255) cTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCAt > 1:2934024/1‑148 (MQ=255) gTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGa < 1:2775896/148‑1 (MQ=255) gTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGa > 2:2652279/1‑148 (MQ=255) ttACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACAGTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGAc > 1:313907/1‑148 (MQ=255) aCCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACtt < 2:820649/148‑1 (MQ=255) tGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGt > 2:2366798/1‑148 (MQ=255) tGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGt < 2:1329444/148‑1 (MQ=255) gCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGTGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTc < 2:1591122/148‑1 (MQ=255) ccAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTcc < 2:52620/148‑1 (MQ=255) gACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCACAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCg < 1:323344/148‑1 (MQ=255) aCCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGt < 2:2929873/148‑1 (MQ=255) aCCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGt < 1:2026249/148‑1 (MQ=255) aCCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGt < 2:1604159/148‑1 (MQ=255) catccatcCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGa > 2:2022371/1‑148 (MQ=255) atccatccAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGAc > 2:1797228/1‑148 (MQ=255) tccaGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGc > 2:2935297/1‑148 (MQ=255) tccaGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGc > 1:1551867/1‑148 (MQ=255) gATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATc > 2:3174451/1‑148 (MQ=255) aTTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCg < 1:218485/148‑1 (MQ=255) aTTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCg < 2:1387514/148‑1 (MQ=255) tGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCa > 2:2801714/1‑148 (MQ=255) tttCCCTTCCAGCCCAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgt < 1:1038140/148‑1 (MQ=255) tttCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgt > 2:1533153/1‑148 (MQ=255) tttCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgt > 1:2234204/1‑148 (MQ=255) ttCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgtt < 2:2184870/148‑1 (MQ=255) cccTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgttgt < 1:2366798/148‑1 (MQ=255) ccTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgttgtt < 1:2218913/148‑1 (MQ=255) ccTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgttgtt < 1:909166/148‑1 (MQ=255) cTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGttt < 1:2283624/148‑1 (MQ=255) ttCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTa < 2:1212749/148‑1 (MQ=255) cccgCCAAAGTAACCCATCTTCATCTACTACTACAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTAcc < 1:2707018/145‑1 (MQ=255) ccAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGaa > 2:1299175/1‑148 (MQ=255) ccAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGaa > 1:675143/1‑148 (MQ=255) ccAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGaa > 2:3013674/1‑148 (MQ=255) cAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAg < 1:1899072/148‑1 (MQ=255) cAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTGTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAg < 2:2085815/148‑1 (MQ=255) aaaGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGa < 2:402197/148‑1 (MQ=255) aaaGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGa > 2:2696032/1‑148 (MQ=255) aGTAACCCATCTTCATCTACTACTTCAGAAGAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACg > 1:2406388/1‑148 (MQ=255) gTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGt < 2:2763157/148‑1 (MQ=255) gTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGt < 2:2439568/148‑1 (MQ=255) accccAGCTTCATATCCTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGCGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGttt < 1:1304861/146‑1 (MQ=255) aaCCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGttt > 1:1008261/1‑148 (MQ=255) aCCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTg < 2:1671403/148‑1 (MQ=255) cccATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGt > 2:2505365/1‑148 (MQ=255) cccATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGt > 2:881316/1‑148 (MQ=255) cATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTAc < 1:1797223/148‑1 (MQ=255) cATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTAc < 1:1525961/148‑1 (MQ=255) cATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTAc < 2:3418514/148‑1 (MQ=255) aTCTTCATCTACTACTTCCGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTACGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACa < 1:114722/148‑1 (MQ=255) aTCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACa > 1:3039735/1‑148 (MQ=255) tCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACAt > 1:801197/1‑148 (MQ=255) tCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACAt > 2:2393171/1‑148 (MQ=255) tCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACAt > 2:2048674/1‑148 (MQ=255) tCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACAt < 2:2313713/148‑1 (MQ=255) cTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATa < 1:561868/148‑1 (MQ=255) tCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAg < 2:2396256/148‑1 (MQ=255) actaccaCTCCAGAAAAACGACGTTTCCAGCGGCAGGGTACATTGACGCGATTAAGAGCACGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCa < 2:3205448/147‑1 (MQ=255) ctactaCTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaa > 2:329244/1‑148 (MQ=255) tactacTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaat < 2:430556/148‑1 (MQ=255) ctactTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaataa > 1:1187468/1‑148 (MQ=255) ctactTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaataa > 1:771274/1‑148 (MQ=255) tactTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGc < 2:3214242/109‑1 (MQ=255) actTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATg > 2:783944/1‑148 (MQ=255) actTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATg > 1:1676129/1‑148 (MQ=255) ctTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATgg > 1:429938/1‑148 (MQ=255) tCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCa > 1:2470360/1‑148 (MQ=255) aGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAgg < 2:833852/148‑1 (MQ=255) gAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGc > 2:1035669/1‑148 (MQ=255) aaaaaCTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCt > 2:1233452/1‑148 (MQ=255) ccAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATcc < 1:2047125/148‑1 (MQ=255) cAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATccc < 1:329244/148‑1 (MQ=255) ggTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTc > 2:1141866/1‑148 (MQ=255) gTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGTCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCg < 1:2098382/148‑1 (MQ=255) tGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGt < 2:1566387/148‑1 (MQ=255) gAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGtt > 1:3444072/1‑148 (MQ=255) aaGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTa > 1:1594285/1‑148 (MQ=255) aGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTAc > 2:633212/1‑148 (MQ=255) gggTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTAcc > 2:2138322/1‑148 (MQ=255) gggTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTAcc > 2:2060397/1‑148 (MQ=255) ggTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCg > 1:3320863/1‑148 (MQ=255) cgcgATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGt > 1:2657913/1‑148 (MQ=255) cgcgATTAAGAGCAAGCGCCTCAGACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGt < 1:3082597/148‑1 (MQ=255) cgATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGttt < 1:2455513/148‑1 (MQ=255) ttAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCAt < 1:3186645/148‑1 (MQ=255) ttAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCAt > 2:3400173/1‑148 (MQ=255) ttAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCAt > 1:1317345/1‑148 (MQ=255) tAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATc > 1:2860325/1‑148 (MQ=255) tAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATc > 1:3166517/1‑148 (MQ=255) | CCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATC > CP009273/2877953‑2878241 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |