| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,962,962 | T→A | 100% | intergenic (‑626/‑59) | rppH ← / → mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,962,962 | 0 | T | A | 99.5% | 698.0 / ‑4.6 | 211 | intergenic (‑626/‑59) | rppH/mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base A (107/103); total (108/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 211 total aligned reads displayed.
AGCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGTTACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTCTGGTTATACATT > CP009273/2962817‑2963106 | gCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATac < 2:691554/148‑1 (MQ=255) gCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATac > 2:2762794/1‑148 (MQ=255) gCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATac > 1:297579/1‑148 (MQ=255) gCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATac < 2:691497/148‑1 (MQ=255) gCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATac < 2:1158175/148‑1 (MQ=255) gCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATac > 2:3471041/1‑148 (MQ=255) gCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATac > 2:2932840/1‑148 (MQ=255) gCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATac < 2:1611102/148‑1 (MQ=255) cTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATaca > 1:1739742/1‑148 (MQ=255) tttCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATacac < 2:768662/148‑1 (MQ=255) gtgGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGa < 1:3209149/148‑1 (MQ=255) tgGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGaa > 1:211823/1‑148 (MQ=255) ggATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAat < 2:2204316/148‑1 (MQ=255) aTAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAatat < 1:2519831/148‑1 (MQ=255) aaCATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTc > 1:2045279/1‑148 (MQ=255) cATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCgg > 1:1162517/1‑148 (MQ=255) tGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGca > 2:2346632/1‑148 (MQ=255) aaGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAAt < 2:2373165/148‑1 (MQ=255) aaGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAAt > 2:1060866/1‑148 (MQ=255) aGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAAtt > 1:398614/1‑148 (MQ=255) gATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTg > 2:3316088/1‑148 (MQ=255) gATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTg > 2:593411/1‑148 (MQ=255) gATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTg < 2:1877142/148‑1 (MQ=255) gATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTg < 2:2429072/148‑1 (MQ=255) aTCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGc > 2:1705246/1‑148 (MQ=255) aTCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGc < 1:2132214/148‑1 (MQ=255) cTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCtgt < 2:2905250/148‑1 (MQ=255) gTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCtgttt > 2:2925004/1‑148 (MQ=255) gTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCtgttt > 1:2011459/1‑148 (MQ=255) tttATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCtgtttg < 2:467944/148‑1 (MQ=255) ttATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCtgtttgt > 2:1605793/1‑148 (MQ=255) tATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCtgtttgtt < 1:1496189/148‑1 (MQ=255) ttttCAGTGACCAGATTTGGAAAACCCTTTGCATTGTTGCTCAACTCGATTACCGGCAACCTAAAAAGAAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGtttt < 2:2448920/148‑1 (MQ=255) ttttCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGtttt < 2:2045279/148‑1 (MQ=255) cAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTaa < 1:2311124/148‑1 (MQ=255) aGTGACCATATTTGGAAAACCCGTTGCAGTGTTGCTCAACTCGATTACCTGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAAt < 2:3262260/148‑1 (MQ=255) tGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCa > 2:3078721/1‑148 (MQ=255) ccAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAACTCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAgg < 1:2650831/148‑1 (MQ=255) gATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTAt > 1:3502909/1‑148 (MQ=255) aTTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATc > 2:2107174/1‑148 (MQ=255) ttGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCAt > 1:527261/1‑148 (MQ=255) tGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAATCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATGGCTGTTTGTTTTTTAATCAAGGTATCATg < 1:2299713/148‑1 (MQ=255) gAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGAc > 1:1173978/1‑148 (MQ=255) gAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGAc > 1:2144537/1‑148 (MQ=255) aaaCCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATAATGACAt < 1:2762794/148‑1 (MQ=255) ttGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCaa < 2:843045/148‑1 (MQ=255) tGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAAc < 2:2421874/148‑1 (MQ=255) gCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAAcc < 1:503641/148‑1 (MQ=255) tgtTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGc > 2:3246341/1‑148 (MQ=255) gcgcAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCAc < 1:1179953/148‑1 (MQ=255) gcAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTg < 1:2969048/148‑1 (MQ=255) aaCTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGct > 1:2696199/1‑148 (MQ=255) cTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGctct > 1:1652254/1‑148 (MQ=255) tCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGTTACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGctctc > 1:140268/1‑148 (MQ=255) tCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGctctc > 1:3293873/1‑148 (MQ=255) gATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCtctctc < 2:939367/148‑1 (MQ=255) aTTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACCCTGCGAATATTCGGCACATAAGTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTctcc > 2:3283944/1‑148 (MQ=255) ttACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTctcct > 2:2696945/1‑148 (MQ=255) ttACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTctcct > 1:2209771/1‑148 (MQ=255) tACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTctcctc > 2:3092941/1‑148 (MQ=255) aCCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCtcctcc < 1:866128/148‑1 (MQ=255) ccGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTccc < 2:968138/148‑1 (MQ=255) gCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGaa > 2:2839633/1‑148 (MQ=255) cAACCTAAAAAGCAATATAAATCAGATAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGaaa > 2:1755965/1‑148 (MQ=255) cAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGaaa < 2:1985410/148‑1 (MQ=255) ccTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTg > 1:1541545/1‑148 (MQ=255) cTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTga > 2:3189452/1‑148 (MQ=255) cTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTga > 2:1132569/1‑148 (MQ=255) aaaaaGCAATATAAATCAGAGAATTGAACAACTCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTTTTTTTTAATCAAGGTATCATGACATGTCAAAACCTCGCCCACTGCTCTCTCCTACCGAAACAgaat > 1:1857652/1‑147 (MQ=255) aaaaaGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTgaag > 2:1296680/1‑148 (MQ=255) aaaaaGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTgaag > 1:915112/1‑148 (MQ=255) aaaaaGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTgaag > 1:2027486/1‑148 (MQ=255) aaaaGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTgaaga > 1:1850202/1‑148 (MQ=255) aaaGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTgaagaa > 2:2524464/1‑148 (MQ=255) aaGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAAc < 1:846718/148‑1 (MQ=255) aaGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAAc > 2:2126489/1‑148 (MQ=255) aGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACa > 2:2276380/1‑148 (MQ=255) aGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACa > 2:3304957/1‑148 (MQ=255) gCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAg > 2:548961/1‑148 (MQ=255) ataAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAgttgtt < 1:2619980/148‑1 (MQ=255) taAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTa < 2:2164900/148‑1 (MQ=255) taAATCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTa > 1:3132446/1‑148 (MQ=255) aaaTCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAg < 1:3229878/148‑1 (MQ=255) aTCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAgcg < 1:1822924/148‑1 (MQ=255) aTCAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAgcg > 2:2545812/1‑148 (MQ=255) cAGAGAATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCa < 1:1147354/148‑1 (MQ=255) gagaATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAg > 2:192294/1‑148 (MQ=255) agaATTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATGAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGc > 2:3192289/1‑148 (MQ=255) aaTTGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGcac < 2:373044/148‑1 (MQ=255) tGAACAACGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATAAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGc > 2:1186794/1‑148 (MQ=255) aacGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACtt > 2:1281896/1‑148 (MQ=255) aacGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACtt < 1:2875002/148‑1 (MQ=255) cGCATGTGGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTAGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTc < 1:593684/148‑1 (MQ=255) tgtgGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTCTGGt < 1:1029199/148‑1 (MQ=255) gtgGAAAAAGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTCTGGtt > 1:843056/1‑148 (MQ=255) aaaaaGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTCTGGTTATAc > 1:734352/1‑148 (MQ=255) aaaaaGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTCTGGTTATAc < 1:3315997/148‑1 (MQ=255) aaaGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTCTGGTTATACAt > 2:302354/1‑148 (MQ=255) aaaGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTCTGGTTATACAt > 2:1283331/1‑148 (MQ=255) aaGATACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTCTGGTTATACAtt < 1:3328467/148‑1 (MQ=255) | AGCTTTCTGTGGATAACATGGTGTAAGATCCTGTTTATTTTCAGTGACCAGATTTGGAAAACCCGTTGCAGTGTTGCGCAACTCGATTACCGGCAACCTAAAAAGCAATATAAATCAGAGAATTGAACAACGCATGTGGAAAAAGTTACACTGCGAATATTCGGCACATAATTGCTGTTTGTTTTTTAATCAAGGTATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAAGAACAGTTGTTAGCGCAAGCACAGCAACTTTCTGGTTATACATT > CP009273/2962817‑2963106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |