| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,974,073 | C→T | 100% | intergenic (‑79/+50) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,974,073 | 0 | C | T | 96.0% | 514.2 / 10.2 | 176 | intergenic (‑79/+50) | ygeA/araE | Asp/Glu_racemase family protein/arabinose transporter |
| Reads supporting (aligned to +/- strand): ref base C (2/5); new base T (82/86); total (84/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 178 total aligned reads displayed.
TTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAG > CP009273/2973928‑2974217 | aaaCGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCACTTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTa < 1:1911871/148‑1 (MQ=255) aCGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAAc > 2:725997/1‑148 (MQ=255) aTAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGaa > 1:477850/1‑148 (MQ=255) tAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGaaa > 2:1721495/1‑148 (MQ=255) aaGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAg < 2:496422/148‑1 (MQ=255) aGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAgg < 2:1359467/148‑1 (MQ=255) ggAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAggg > 1:1858214/1‑148 (MQ=255) ggAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAggg > 2:791292/1‑148 (MQ=255) ggAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAggg < 2:2745266/148‑1 (MQ=255) ggAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAggg < 2:1853887/148‑1 (MQ=255) gAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGc < 2:2356873/148‑1 (MQ=255) gAATGGTGGATTCCCAGCTCATACCTCCCAGAAAACCAATTGTTTTCATTCCTCTCTCCTGTTGTGTGTTACCGAAACAAGGCTGAATAAGGAACGAGAAAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGc < 1:1355569/148‑1 (MQ=255) aTGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCg > 2:586093/1‑148 (MQ=255) aTGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCg > 1:1796762/1‑148 (MQ=255) tggtggATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACATGGCTTAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCgg < 1:262226/148‑1 (MQ=255) tggtggATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCgg < 1:2035152/148‑1 (MQ=255) ggtggATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGa < 2:2168762/148‑1 (MQ=255) gtgtATTCCCAGCAAATACCTCCCACAAAACCAATTTTTTTCTTTCCTCTCTCCTGATGTGTTTACCCGCAAAACGGCTCAATAAGTAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGAt < 1:2998258/148‑1 (MQ=255) gtgtATTCCCACCACATACCTCCCACAAAACCAATTTTTTTAATTCCTCGCTCCTGTTGTGTGTTACCGAAACAGGGCTTAATATGGAACGTGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGAt < 1:2998321/148‑1 (MQ=255) gtggATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGAt > 1:1072569/1‑148 (MQ=255) aTTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTAc > 1:2240732/1‑148 (MQ=255) aTTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTAc > 1:3108272/1‑148 (MQ=255) aTTCCCAGCAAAAACCTCCCAGAAAACCATTTTTTTTATTTCCGCTCGCCTGATGTGTGTTCCCCCAACAAGGCTTAATAAGGAACGAGAAAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTAc < 1:2400937/148‑1 (MQ=255) tCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAg > 2:1676378/1‑148 (MQ=255) ccAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGca > 1:2018218/1‑148 (MQ=255) aGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGcaca > 2:2514086/1‑148 (MQ=255) cTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATc > 1:2571109/1‑148 (MQ=255) cTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATc < 2:2453525/148‑1 (MQ=255) cTCATACCTCCCAGCAAACAAATTGTTTTCTTTCCTCTCGCCTTATGTGTGTTCCCGCAACACGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATc < 1:2486775/148‑1 (MQ=255) taccacccAGAAAACAATTTGTTTTCTTTCCTCTCGCCTTATGTGTGTTCCCGCAACACGGCTTAATAAGCAACGACACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGc < 1:1607844/143‑1 (MQ=255) cctccCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGccc > 1:2689121/1‑148 (MQ=255) aGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTTTTACCGAAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa < 1:1960733/148‑1 (MQ=255) aGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 2:683711/1‑148 (MQ=255) cAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATc < 1:2033098/148‑1 (MQ=255) cAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATc < 2:3249299/148‑1 (MQ=255) aaaCCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:1260868/1‑148 (MQ=255) ttGTTTTCATTCCTCTCTCCTGATGTTTGTTACCGCAACAAGGCTTAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCg < 2:737061/148‑1 (MQ=255) ttGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCg > 1:225551/1‑148 (MQ=255) tGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGa > 1:190813/1‑148 (MQ=255) ttttCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGata < 2:2541190/148‑1 (MQ=255) tCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAttt < 2:1309124/148‑1 (MQ=255) aTTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtct < 1:276917/148‑1 (MQ=255) ttCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc > 1:2177617/1‑148 (MQ=255) tCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa > 2:1076325/1‑148 (MQ=255) tCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa > 1:1071861/1‑148 (MQ=255) ccTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCaa < 2:3250798/148‑1 (MQ=255) ctctcCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACtt > 2:3028123/1‑148 (MQ=255) ctctcCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACtt < 1:546830/148‑1 (MQ=255) tctcCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtc > 1:1125996/1‑148 (MQ=255) ctcCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtct < 1:1460576/148‑1 (MQ=255) ccTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCg > 1:350672/1‑148 (MQ=255) gATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCt > 2:792068/1‑148 (MQ=255) aTGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg > 2:3086139/1‑148 (MQ=255) gtgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCAt > 1:652728/1‑148 (MQ=255) tgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATc > 1:752939/1‑148 (MQ=255) tgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATc > 1:1803851/1‑148 (MQ=255) tgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATc < 2:3333370/148‑1 (MQ=255) tACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGt > 2:3410410/1‑148 (MQ=255) tACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGt > 2:1109038/1‑148 (MQ=255) caacaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAATGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCg < 2:2555420/148‑1 (MQ=255) caacaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCg < 2:2136545/148‑1 (MQ=255) aaacaaGGCTTAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCg < 1:3002865/147‑1 (MQ=255) aacaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGt < 2:1797473/148‑1 (MQ=255) aacaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGt < 2:1797422/148‑1 (MQ=255) aacaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGt < 2:348152/148‑1 (MQ=255) acaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGtt > 1:2917772/1‑148 (MQ=255) caaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:3050926/1‑148 (MQ=255) caaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:56705/1‑148 (MQ=255) caaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc < 2:1091359/148‑1 (MQ=255) ggCTTAATAAGGAACGACAAAAACGCCACAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGat < 1:983422/148‑1 (MQ=255) gAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGt < 2:88552/148‑1 (MQ=255) aaTAAGGAACGAGACAAACGCCTCAACGGCCAAGGGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGtt < 1:450551/148‑1 (MQ=255) tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTcc < 2:328338/148‑1 (MQ=255) aacgAACGACACAAACGCCTCAACGGCCAAGTGCCAAATTACAATTAACGAAAAAAAGGACGGATGTACAGCACATCCGGCCCGTGAACTCAGACGACGCACTGTCGCAACTTCTCGCCTGCCATCAGGATGCGATCGATAAGtgaca > 2:2783995/4‑144 (MQ=255) aGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAg > 2:1112250/1‑148 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCg < 2:1125996/148‑1 (MQ=255) cacctacaCAAACGCCTAAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCACACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCg < 1:1872315/141‑1 (MQ=255) agaCAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACCGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACa < 2:2318320/148‑1 (MQ=255) agaCAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACa < 2:2318253/148‑1 (MQ=255) gaCAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAt < 2:2810711/148‑1 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAtt > 1:3041371/1‑148 (MQ=255) cAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAttt < 1:858772/148‑1 (MQ=255) cAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAttt < 2:2961971/148‑1 (MQ=255) aaaCGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAtttt < 2:664546/148‑1 (MQ=255) aaaCGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCACACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAtttt < 2:471334/148‑1 (MQ=255) aaCGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAttttt < 2:2240732/148‑1 (MQ=255) aCGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTg > 1:1299057/1‑148 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTgg > 2:1996480/1‑148 (MQ=255) cTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGttt < 2:211253/148‑1 (MQ=255) cTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGttt < 2:20803/148‑1 (MQ=255) cGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGa < 1:791292/148‑1 (MQ=255) cGGCCAAGTGCCCAATTTCTATGAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGa < 2:1354012/148‑1 (MQ=255) aaGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAg < 1:1980718/148‑1 (MQ=255) aGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGc > 2:2845306/1‑148 (MQ=255) tGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCTGAATGAGCCa > 2:646276/1‑148 (MQ=255) gCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAg > 1:3121065/1‑148 (MQ=255) cccAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa > 2:1558754/1‑148 (MQ=255) ccAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGaa < 2:626857/148‑1 (MQ=255) cAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGaaa > 1:207747/1‑148 (MQ=255) aaTTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAg > 1:1374727/1‑148 (MQ=255) | TTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAG > CP009273/2973928‑2974217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |