| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,988,355 | C→A | 100% | pseudogene (97/633 nt) | ygeK ← | pseudogene; putative 2‑component transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,988,355 | 0 | C | A | 100.0% | 612.7 / NA | 196 | pseudogene (97/633 nt) | ygeK | pseudogene; putative 2‑component transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (86/110); total (86/110) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| Rejected as polymorphism: Polymorphic base substitution creates a homopolymer stretch. | |||||||||||
Only 100 of 203 total aligned reads displayed.
ATATGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAATCATC > CP009273/2988210‑2988499 | atatGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCcaaaaa < 1:370132/148‑1 (MQ=255)atatGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCcaaaaa < 1:1503573/148‑1 (MQ=255)atatGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCcaaaaa < 2:2333261/148‑1 (MQ=255) tatGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCACATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCaaaaac > 2:251471/1‑148 (MQ=255) tatGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCaaaaac > 2:2852293/1‑148 (MQ=255) atGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTCCTTCAGATCTTTATAGCCCCCAAAAAcc > 2:3344144/1‑148 (MQ=255) aGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCa < 1:2650648/148‑1 (MQ=255) aGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCa < 1:499517/148‑1 (MQ=255) ctatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa > 1:1440808/1‑148 (MQ=255) ctatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa > 1:1944113/1‑148 (MQ=255) ctatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa > 1:1846275/1‑148 (MQ=255) ctatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa < 2:1560038/148‑1 (MQ=255) ctatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa < 2:365147/148‑1 (MQ=255) ctatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa < 2:944705/148‑1 (MQ=255) tatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaaa > 1:244923/1‑148 (MQ=255) atctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAAt < 1:1492600/148‑1 (MQ=255) tctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATc < 2:1190403/148‑1 (MQ=255) aTGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGa < 2:250547/148‑1 (MQ=255) tGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGAt < 1:1716574/148‑1 (MQ=255) gCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATa > 2:3219836/1‑148 (MQ=255) aTTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATg > 1:2700384/1‑148 (MQ=255) aTTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATg > 1:943279/1‑148 (MQ=255) tttAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGt > 2:1734811/1‑148 (MQ=255) ttAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTc > 2:2493118/1‑148 (MQ=255) ttAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTc > 1:2754824/1‑148 (MQ=255) aCCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTGCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCga > 1:3003554/1‑148 (MQ=255) cATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGaa > 2:796751/1‑148 (MQ=255) ttttACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAAt > 2:1022649/1‑148 (MQ=255) ttttACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAAt > 2:1176195/1‑148 (MQ=255) ttttACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAAt > 2:2925121/1‑148 (MQ=255) tttACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCATAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATATCTTTCTTCAGATCTTTATAGCCCCCAAAAAGCTCATATAAATCAGGATAATGTCCGAGAAATc > 1:599469/1‑148 (MQ=255) aCGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCaa < 2:2771829/148‑1 (MQ=255) aCGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCaa < 1:1552036/148‑1 (MQ=255) aCGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCaa < 1:1809773/148‑1 (MQ=255) gTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTAt < 2:661196/148‑1 (MQ=255) ttCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATc > 1:1072753/1‑148 (MQ=255) tCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATcc < 1:1174698/148‑1 (MQ=255) ccATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCatcaat > 2:1756434/1‑148 (MQ=255) catcatTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCatcaatc > 2:2789027/1‑148 (MQ=255) ttCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATaaa < 2:1386758/148‑1 (MQ=255) ccACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACGCTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCGCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACg > 1:3252375/1‑148 (MQ=255) cACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACgg < 1:520699/148‑1 (MQ=255) aaaTTATCCTACAATAAATATTTTGTCTGTAGATTTGTTACACTACGATATAGCTTTCTTAAGATATTTATAGCCCCAAAAAACCTCAAATAAATCAGGATAATGTCCGAGAAATAAAATTATCCCATCAATCATAAACGgctgctta < 2:2436450/148‑3 (MQ=255) aTTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGATATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATATTGTCCTAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATc < 1:1355424/148‑1 (MQ=255) ttCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCt > 1:3450130/1‑148 (MQ=255) ttCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCt < 2:1799687/148‑1 (MQ=255) tctcCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTg > 2:166845/1‑148 (MQ=255) caaaaaaTAAATATTTAGGCTTTTTTTTTTTTACACTCCTATATAGATTTCTTCATATATTTATACCCCCAAAAAACATCATAAAAATCAGTATAATGCCCGATAAATCCAATTATCCCATAAATCATAAACGGCTGCTGATCTGaaa < 1:2373714/145‑1 (MQ=255) tAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACt > 1:3384803/1‑148 (MQ=255) aaaaTAAATTTTTAGGCTGTATATTTGTTACACTCCGCTATAGATTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAAGGTCCGAGAAATCAAATTATCCAATCAATCATAAACGGCTGCTGATCTGAAACTa < 1:2667997/148‑1 (MQ=255) aataaataTTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACa < 2:1067880/148‑1 (MQ=255) ataaataTTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaa < 1:1469605/148‑1 (MQ=255) ataaataTTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaa < 2:1268273/148‑1 (MQ=255) taaataTTTAGGCTTTATATTTTTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTAATATAAATCAGTATAATGTCCGATAAATCAAATTATCCCAAAAATCATAAACGGCTGCTGATCTGAAACTACaat < 1:449185/148‑1 (MQ=255) taaataTTTAGGATGTATATTTGTTACACTCCGATATAGCTTTCTTCATATATTTATACCCCCAAAAAACCTCATATAAATCAGGATATTTTCCGAGAAATCAAATTATCCCAACAATCATAAACGGCTGCTGATCTGAAACTACaat < 1:448823/148‑1 (MQ=255) atatTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaatttt < 1:859255/148‑1 (MQ=255) atatTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaatttt > 2:1284599/1‑148 (MQ=255) atTTAGGCTGTAGATTTTTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaa < 2:1378006/148‑1 (MQ=255) atTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaa > 1:2884201/1‑148 (MQ=255) ttAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATATCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCAATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaatt > 2:268032/1‑148 (MQ=255) ttAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaatt > 1:1151120/1‑148 (MQ=255) ttAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaatt > 1:1150022/1‑148 (MQ=255) gCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTc > 1:3353201/1‑148 (MQ=255) tGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTccc < 1:1734811/148‑1 (MQ=255) gTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCa < 1:1102861/148‑1 (MQ=255) gTAGATTTGTTACACTCCGATATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCa < 1:2854892/148‑1 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCat > 2:2740135/1‑148 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCatata > 1:2002291/1‑148 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCatatat > 2:1767705/1‑148 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCatatat < 1:847094/148‑1 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCatatat < 2:2465990/148‑1 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCa > 1:3191244/1‑148 (MQ=255) tACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGATAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATc < 1:3237995/148‑1 (MQ=255) tACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATc > 1:2305198/1‑148 (MQ=255) tACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATc > 2:1989735/1‑148 (MQ=255) tACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATc > 2:216552/1‑148 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCACCAAAAACCTAATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGa < 2:140781/148‑1 (MQ=255) tCCGCTTTAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATACACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAg < 1:251471/148‑1 (MQ=255) tCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAg > 2:1310505/1‑148 (MQ=255) tCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAg < 1:3152778/148‑1 (MQ=255) ccGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAgt > 2:66490/1‑148 (MQ=255) ccGATATAGCTTTCTTCATATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAgt < 1:3414838/148‑1 (MQ=255) cGCTATAGCTTTCTTCAGATCTGTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAgtg < 2:3116660/148‑1 (MQ=255) tataGCTTTCTTCATATCTTTATAGCCCCCAAAACCCTCATATAAATCAGTATAATGTCCGAGAAATCCAATTATCCCATCAATCATACACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTaa < 1:5646/148‑1 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAAt > 2:1522915/1‑148 (MQ=255) cTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCt > 1:1205712/1‑148 (MQ=255) tttCATCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCtt < 2:1923139/148‑1 (MQ=255) tcttcAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTa > 2:2577975/1‑148 (MQ=255) tcttcAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTa > 2:818568/1‑148 (MQ=255) cttcAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTaa < 2:2700384/148‑1 (MQ=255) cttcAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTaa < 2:943279/148‑1 (MQ=255) aTCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcatt > 1:2942680/1‑148 (MQ=255) tCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcattc < 1:2502723/148‑1 (MQ=255) tCTTTATAGCCCCCAAAAACCTAATATAAATCAGGATAATGTCCGATAAATCCAATGATCCCATCAAACATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcattc < 1:1148772/148‑1 (MQ=255) tttATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcattcat < 2:3178569/148‑1 (MQ=255) ttATAGCCCCCAAAACCCTCATATAAATAAGGATAATGTCCGAGAAATCAAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcattcatt < 1:1742470/148‑1 (MQ=255) ttATAGCCCCAAAAACCCACATATAAATCAGGATAAGGTCCGATAAATCAAATTAACCCATCAATAATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcattcatt < 1:11396/148‑1 (MQ=255) tataGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCAttt < 1:1064792/148‑1 (MQ=255) gCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATaa < 2:3391644/148‑1 (MQ=255) caaaaaCCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAatcatc < 1:1366755/148‑1 (MQ=255) | ATATGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAATCATC > CP009273/2988210‑2988499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |