| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,039,409 | T→G | 9.3% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,039,409 | 0 | T | G | 9.3% | 286.3 / 5.0 | 164 | intergenic (‑149/+118) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| Reads supporting (aligned to +/- strand): ref base T (29/115); new base G (16/4); total (45/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.24e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 167 total aligned reads displayed.
TGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCAGGA > CP009273/3039262‑3039556 | tGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGt < 2:2606935/148‑1 (MQ=255)tGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGt > 1:2344450/1‑148 (MQ=255) ttCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTcccc < 1:2582073/148‑1 (MQ=255) tCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCt > 2:1432609/1‑148 (MQ=255) agaAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCAcc < 2:2486799/148‑1 (MQ=255) taaaatTTATTTCGTTGACTTATCTTTGAGATTGATAACAAACTGGCTAAATGTTAAATGTTGGCACGCTTTACCCCCTCGCCCTTTCCGGTAGTGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCAccc < 1:4202/147‑1 (MQ=255) gaAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCAccc < 2:1399309/148‑1 (MQ=255) attCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCACACCCaaaacaaca > 2:1107202/1‑142 (MQ=255) tCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCACACCCCAAcccacacc > 1:2206802/1‑143 (MQ=255) tCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑Tcc < 2:2838354/148‑1 (MQ=255) tCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑Tcc > 2:1449542/1‑148 (MQ=255) tGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCGGCCCCAAACCCGC‑Accccca > 2:3075133/1‑146 (MQ=255) aCGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAg < 1:742904/148‑1 (MQ=255) cGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAgg < 2:924726/148‑1 (MQ=255) tttGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAg < 2:1801024/148‑1 (MQ=255) ttGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCGCACCCGAACCCAC‑TCCCCAACGGGGCGTgg > 2:1566215/1‑148 (MQ=255) gagaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAgggg < 2:2231181/148‑1 (MQ=255) gagaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAgggg < 2:679862/148‑1 (MQ=255) gagaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGCAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAgggg < 2:465938/148‑1 (MQ=255) agaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGTGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGa < 1:203219/148‑1 (MQ=255) aTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACt < 2:1270365/148‑1 (MQ=255) aTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCGCACCCGAACCCTC‑TCCCCAAAGGGGCGAGGGGCCt > 2:3446871/1‑148 (MQ=255) tGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCAAACCCGC‑TCCCCCAACGGGCGAggggccagt > 2:2452956/1‑143 (MQ=255) tGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCTCACCCTAAACCTC‑TCCCCCAAGGGGCGGGGGGACTGt > 2:2453444/1‑148 (MQ=255) cTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCt < 1:789882/148‑1 (MQ=255) cTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCGGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCt < 1:789886/148‑1 (MQ=255) tAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCCGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTg < 1:1074696/148‑1 (MQ=255) tAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTg < 1:2763277/148‑1 (MQ=255) aaCAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCACAACCAAAACCAC‑TCACCAAAAGGGCGCGGGGCCAGTCAGa > 2:2476280/1‑148 (MQ=255) aCAAACTGGCTCAATCTTCATTGTTGGCACGCTTTTCCCCCTCGCACTTGCAGGGAGTGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAg < 1:1107202/148‑1 (MQ=255) aaaCTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑a < 2:2436462/148‑1 (MQ=255) accTGGCTCAATCTTCAATGTTGGCACGCTTGTCCCCCTCGCCCTTACAGGGAGAGGGCCGGGGTGAGGGTAAATCTTCGCGCCAGTGCCGTCCTGTTCCCCTCACCCTAACCCGC‑TCCCCAACGGGGCGAGGGGACTGTCTGAGC‑Ac < 2:2919966/146‑1 (MQ=25) aCTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑t < 2:2344450/148‑1 (MQ=255) aCTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCGCACCCAAACCCCC‑CACCCCAAGGGGCGCGGGGGCGGTCTGAgggcg > 1:820365/1‑144 (MQ=255) gCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCACTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCACCAAAACCAAAAACAC‑AACCCCAACGGGGGAGGGGACTGGATGAGC‑aaatttt > 2:647264/1‑142 (MQ=255) tCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATCTTCGCGCCAGTGCCGGCCTGTGCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTa < 2:2590148/148‑1 (MQ=255) aaTCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACt < 2:2086154/148‑1 (MQ=255) aTCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACtt < 2:2217120/148‑1 (MQ=255) tCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACttt < 2:1150562/148‑1 (MQ=255) tCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCGCACCCGAACCCAA‑TCCCCCAAGGGGGGAGGGGCCTGGGTTAGC‑AA‑TTTTTTAAttt > 1:3130227/1‑148 (MQ=255) tCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCTCACCCAAACCCAC‑TCCCCCAAGGGGGGCGGGGGCTGGCTGTGC‑ACGTTTTGTaggt > 2:1671664/1‑145 (MQ=255) ttCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGt < 2:1358559/148‑1 (MQ=255) ttCAATGTAGGCACGCTTGTCCCCCTCGCCCGTTCAGGGAGAGGGCCGGGGTGAGGGAAAATAGACGCGCCAGTGCCGGCCGGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGt < 2:2394542/148‑1 (MQ=37) aaTGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTCAATATTCGCGCCAGTGCCGGCCTGTTACCCTCACCCTAACCCTC‑TACCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACGTGGTCAt > 2:1959839/1‑148 (MQ=255) tgtgGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTGCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCt < 1:2946211/148‑1 (MQ=255) ttGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGa < 2:179591/148‑1 (MQ=255) tGGCACGCTTGTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGAc < 2:2901186/148‑1 (MQ=255) gCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCGCCCCCAAAACCAC‑AACCCAAACGGGGGCGGGGGCTGTCTGGGC‑CC‑GTTTTTACTTTTTGATCTGAcaa > 2:1224074/1‑146 (MQ=255) cGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCTAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTaaaa < 2:11085/148‑1 (MQ=255) cGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCTAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTaaaa < 1:2584412/148‑1 (MQ=255) cTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAg < 1:2385069/148‑1 (MQ=255) gtgtCCCCCTCGCCCGTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAgg < 2:2252040/145‑1 (MQ=255) tttCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCGC‑TCCCCAAAGGGGCGAGGGGCCGGTCGGTGC‑AC‑TTTTGTACTTTGTGATCTGTCTAAAAAGgc > 2:2438745/1‑148 (MQ=25) tttCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCGCACCCGAACCCAC‑ACCCCCAAAGGGCGCGGGGACAGTGTGAGG‑CC‑GTTTGTTGTTTGTGTTGTTACTAAAAATgc > 1:2623411/1‑148 (MQ=255) ttCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGgcg < 1:1187370/148‑1 (MQ=255) gtCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGgcg < 2:2861516/147‑1 (MQ=255) tCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGgcgc < 2:1073003/148‑1 (MQ=255) tCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCAAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGgcgc < 1:2289290/148‑1 (MQ=255) cccTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGa < 1:2791026/148‑1 (MQ=255) ccTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCTCACCCAAAACCAC‑ACCCCAAACGGGCGAGGGGGCGGTCTGAGCAAC‑GTTTTTA‑TTTTTGATCTGACTAAAAATGGGCCGaa > 2:44219/1‑148 (MQ=255) ccTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCACACCCGAACCCAC‑ACCCCCAAGGGGCGCGGGGACGGTGGGTGC‑AC‑GTTTGTTCTTTGTGATATTAATAAAAATgcggccca > 2:3252959/1‑143 (MQ=255) ccTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGaa < 2:2524364/148‑1 (MQ=255) gCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAgcgc < 1:1394982/148‑1 (MQ=255) gCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAgcgc < 1:2463092/148‑1 (MQ=255) ccTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCt < 1:3249047/148‑1 (MQ=255) ttCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTa < 2:1066199/148‑1 (MQ=255) gtCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTa < 2:1534125/147‑1 (MQ=255) tCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAg < 2:1474945/148‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCACACCCTAACCCAC‑AACCCCAAGGGGGGGGGGGACGGGCTGAGC‑AC‑ATTTTTACGTTTTCATCTGACTAAAAATGCGCCGAAGCGCCGGTAGaaaa > 2:1124943/1‑148 (MQ=255) gagaGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAAt < 2:2768824/148‑1 (MQ=255) gagaGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAAt < 2:1300267/148‑1 (MQ=255) gagaGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAAt < 1:1821538/148‑1 (MQ=255) ggCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCACACCCAAAAACACAACCCCAAACGGGGGCGGGG‑CCGTCGGTGC‑AC‑AATTTTAAATTGTCAAATGTCAAAAAAAGCGCCGCAGCGCCCTTAGACAAttctgg > 2:17725/1‑143 (MQ=255) gCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGa < 1:3074966/148‑1 (MQ=255) gCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGa < 1:1930421/148‑1 (MQ=255) gCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGa < 1:2252383/148‑1 (MQ=255) gCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGa < 1:3074940/148‑1 (MQ=255) ccGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGaa < 2:707446/148‑1 (MQ=255) ggggTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATc < 1:1267692/148‑1 (MQ=255) gggTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCTCACCCTAACCCTC‑ACCCCCAAGGGGCGCGGGGCCTGGCTGGGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGACGCGCCGGTAGAAAATAGTGGAAtaa > 2:2550614/1‑146 (MQ=255) gAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGa < 2:3221093/148‑1 (MQ=255) ggTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTNAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAAtt < 1:1779312/148‑1 (MQ=255) ggTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAAtt < 2:1418012/148‑1 (MQ=255) aaTATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCACAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTg < 1:1963873/148‑1 (MQ=255) atatTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTgg < 2:2206802/148‑1 (MQ=255) tatTCGCGCCAGTGCCGGCCTGTTGCCCTCACCCAAACCCTA‑ACCCCAAAGGGGCGAGGGGACAGTCAGAGC‑AC‑ATTTGTACTGTGTAAACTTACTAAAAAGGCGCCGAAGCGCCCTTAGAAAATATTCGAATCAGTGAAATAATGGt > 2:2021742/1‑148 (MQ=25) tCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTAtt < 2:1507412/148‑1 (MQ=255) gcCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCt < 1:163069/148‑1 (MQ=255) gcCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCt < 1:3253493/148‑1 (MQ=255) ccAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTa < 1:372624/148‑1 (MQ=255) gCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCgg < 2:221063/148‑1 (MQ=255) gCCGGCCTGGTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCgg < 2:2812398/148‑1 (MQ=255) ccGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGt < 1:1449542/148‑1 (MQ=255) ccGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGt < 2:1644586/148‑1 (MQ=255) ccGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGt < 1:1449661/148‑1 (MQ=255) gCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACg < 1:2525170/148‑1 (MQ=255) cTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCa < 1:1042737/148‑1 (MQ=255) tGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCAg < 2:844369/148‑1 (MQ=255) gTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCAgg < 1:3382674/148‑1 (MQ=255) ttCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCAGGa > 2:1577440/1‑148 (MQ=255) | TGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAGC‑AC‑TTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCAGGA > CP009273/3039262‑3039556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |