| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,122,778 | A→C | 100% | pseudogene (725/1101 nt) | yghO ← | pseudogene, DNA‑binding transcriptional regulator homology |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,122,778 | 0 | A | C | 96.6% | 803.3 / 4.5 | 203 | pseudogene (725/1101 nt) | yghO | pseudogene, DNA‑binding transcriptional regulator homology |
| Reads supporting (aligned to +/- strand): ref base A (4/3); new base C (91/105); total (95/108) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 204 total aligned reads displayed.
GTTCGCACACCGCTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCTTCGGCAAACCGCT > CP009273/3122631‑3122919 | cGCACACCGCTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCa < 2:811923/148‑1 (MQ=255) ccGCTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGt < 1:3505199/148‑1 (MQ=255) ccGCTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGt < 1:1909586/148‑1 (MQ=255) ccGCTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGt < 2:2796783/148‑1 (MQ=255) cGCTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTc < 1:1294836/148‑1 (MQ=255) cGCTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTc < 1:514571/148‑1 (MQ=255) gCTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTcc > 2:2655253/1‑148 (MQ=255) cTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCg > 1:3414452/1‑148 (MQ=255) gACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGc > 2:2620224/1‑148 (MQ=255) tttCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCAcc < 2:2858287/148‑1 (MQ=255) tttCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCAcc > 2:2504670/1‑148 (MQ=255) ttCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCa > 1:794907/1‑148 (MQ=255) tCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAg < 2:348901/148‑1 (MQ=255) tCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAg < 1:471413/148‑1 (MQ=255) cAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGa < 2:851788/148‑1 (MQ=255) aaaCGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGat < 2:3414452/148‑1 (MQ=255) aaCGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCTACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGata < 2:1422258/148‑1 (MQ=255) aaCGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGata > 2:2994395/1‑148 (MQ=255) aCGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGatat > 2:2805661/1‑148 (MQ=255) aCGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGatat > 2:2331166/1‑148 (MQ=255) aCGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGatat > 2:152887/1‑148 (MQ=255) gCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATAttt < 1:3032300/148‑1 (MQ=255) cacaGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTaa < 2:1626540/148‑1 (MQ=255) cacaGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTaa < 1:3292275/148‑1 (MQ=255) caGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGt > 2:605424/1‑148 (MQ=255) caGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGt > 1:2784919/1‑148 (MQ=255) aGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGtt > 2:1967825/1‑148 (MQ=255) gCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTg < 2:2456185/148‑1 (MQ=255) cAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGa < 2:798084/148‑1 (MQ=255) aaTTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGAt < 1:3282487/148‑1 (MQ=255) aaTTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGAt < 1:3325591/148‑1 (MQ=255) aGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGt > 1:2876653/1‑148 (MQ=255) gCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTc > 1:264401/1‑148 (MQ=255) ccGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTcg > 1:2069247/1‑148 (MQ=255) aaGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGa < 2:1809879/148‑1 (MQ=255) gggAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAAt > 2:2916818/1‑148 (MQ=255) gggAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAAt > 2:2682336/1‑148 (MQ=255) gggAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAAt < 1:2619597/148‑1 (MQ=255) ggAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAAtt < 1:1157302/148‑1 (MQ=255) gAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTc < 1:2421593/148‑1 (MQ=255) gAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTc < 2:901888/148‑1 (MQ=255) gAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATGTAAGTTGATCGCCCATGGTCGCGACTTc > 2:2228559/1‑148 (MQ=255) aaaGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCa < 2:2694454/148‑1 (MQ=255) agagTGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATg < 1:2699706/148‑1 (MQ=255) agagCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATg > 1:2983504/1‑148 (MQ=255) agagCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATg < 1:1300745/148‑1 (MQ=255) gagCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCCTATCGTCCGGCACCCGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGt > 2:363851/1‑148 (MQ=255) agCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGtt < 1:918440/148‑1 (MQ=255) cGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCg < 1:1675549/148‑1 (MQ=255) tCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGACTTCATGTACGGTa > 2:2124620/1‑148 (MQ=255) tCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTa > 2:3016151/1‑148 (MQ=255) tCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTa > 1:2105864/1‑148 (MQ=255) tCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTa > 2:1150883/1‑148 (MQ=255) tCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTa > 1:335675/1‑148 (MQ=255) ccGTTCAGATCGGCAATCGCCTCGTTGATGTTCGACAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTaa > 2:558185/1‑148 (MQ=255) ttCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACg < 2:1586519/148‑1 (MQ=255) ttCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACg < 2:507717/148‑1 (MQ=255) ttCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACg < 2:2242318/148‑1 (MQ=255) tCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCCGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACgg < 1:676986/148‑1 (MQ=255) tCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACgg < 1:676962/148‑1 (MQ=255) tCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACaa > 1:2545262/1‑148 (MQ=255) cGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACaaa < 2:2547402/148‑1 (MQ=255) ggCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAAt < 1:1867061/148‑1 (MQ=255) cAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATcc < 1:545919/148‑1 (MQ=255) tCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCa < 1:1724079/148‑1 (MQ=255) tCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCa > 1:2918354/1‑148 (MQ=255) cTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTtg < 2:1244677/148‑1 (MQ=255) tCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTtgt < 2:3150078/148‑1 (MQ=255) cGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTtgtg > 1:2765882/1‑148 (MQ=255) tGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTACACGGCACAAATCCCCAGTTGtgctg < 2:1561766/148‑1 (MQ=255) aTGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgcc > 1:594838/1‑148 (MQ=255) gTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgccag > 2:1995071/1‑148 (MQ=255) cAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCagag < 1:2505440/148‑1 (MQ=255) cAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCagag < 1:202050/148‑1 (MQ=255) gCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg > 2:3305952/1‑148 (MQ=255) gCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg < 2:1072321/148‑1 (MQ=255) gCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg > 1:1799819/1‑148 (MQ=255) gCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg > 1:1800380/1‑148 (MQ=255) gCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg > 1:2006834/1‑148 (MQ=255) gCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg > 1:234497/1‑148 (MQ=255) gCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg > 2:1720050/1‑148 (MQ=255) cGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGaa < 1:1618727/148‑1 (MQ=255) aCAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGaaaa > 2:419999/1‑148 (MQ=255) cAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGGCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAt < 1:2688630/148‑1 (MQ=255) tAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAtctc < 2:537025/148‑1 (MQ=255) tAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAtctc > 1:1525629/1‑148 (MQ=255) tAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAtctc > 1:317553/1‑148 (MQ=255) aaCGCGCAGGGTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCAc > 1:761706/1‑148 (MQ=255) gggTGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGACTTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGagc > 2:1951067/1‑146 (MQ=255) tGCAGAATCAATCTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCACCAGTTGTGCTGCCAGACAGAGTTGAAAATCTCACGCAGGCTCTGc > 2:1888290/1‑148 (MQ=255) aatcaatcTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCAtctc > 2:3181471/1‑148 (MQ=255) aatcaatcTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCAtctc > 2:1394011/1‑148 (MQ=255) tcaatcTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCtt < 2:2619376/148‑1 (MQ=255) tcaatcTCAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAAAGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCtt > 2:2165567/1‑148 (MQ=255) tcaatcTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCtt < 2:2213532/148‑1 (MQ=255) tctcAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATCGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCTTCGGc > 2:2176399/1‑148 (MQ=255) ctcAGCGATATAGCTCATATCGTCCGGCCCCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCTTCGGCa > 2:3293759/1‑148 (MQ=255) cAGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCTTCGGCaaa > 2:784846/1‑148 (MQ=255) aGCGATATAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCTTCGGCAAAc < 2:794907/148‑1 (MQ=255) atatAGCTCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCTTCGGCAAACCGCt > 2:691900/1‑148 (MQ=255) | GTTCGCACACCGCTGACTTTCAAACGCCACAGCAATTTTGCCCAGCCGAAGGGAAAGAGCGATCCGTTCAGATCGGCAATCGCCTCGTTGATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCTTCGGCAAACCGCT > CP009273/3122631‑3122919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |