| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,182,732 | T→A | 67.8% | pseudogene (1953/2445 nt) | yqiG → | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,182,732 | 0 | T | A | 67.8% | 256.4 / 183.1 | 189 | pseudogene (1953/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (24/37); new base A (45/83); total (69/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
Only 100 of 189 total aligned reads displayed.
GCCAGTTATCAGCATAATACCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCGAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAGTGTTGATACC > CP009273/3182589‑3182876 | gcCAGTTATCAGCATAATACCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACTTTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTg < 2:607105/148‑1 (MQ=255)gcCAGTTATCAGCATAATACCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTg < 1:3114240/148‑1 (MQ=255) aGTTATCAGCATAATACCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTg < 1:1345265/148‑1 (MQ=255) gTTATCAGCATAATACCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGa < 2:674776/148‑1 (MQ=255) cAGCATAATACCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTcgc > 2:1923287/1‑148 (MQ=255) cATAATACCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGtt < 2:1059059/148‑1 (MQ=255) ataCCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTAt < 2:2776497/148‑1 (MQ=255) taCCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATg > 1:3196209/1‑148 (MQ=255) taCCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATg > 1:3196224/1‑148 (MQ=255) ccGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGAt < 1:1944026/148‑1 (MQ=255) gagaACGGTCGACTCTACCTCTCCGGTACATCACCGCTAGACTGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCg < 2:1830131/148‑1 (MQ=255) agaACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGa > 2:2327284/1‑148 (MQ=255) gaACGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGAc > 2:792410/1‑148 (MQ=255) aaCGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACg < 1:2003217/148‑1 (MQ=255) aCGGTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGc < 1:431399/148‑1 (MQ=255) gTCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGa < 2:3263434/148‑1 (MQ=255) tCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGAc > 2:355668/1‑148 (MQ=255) tCGACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGAc > 2:1771064/1‑148 (MQ=255) gACTCTACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACgg < 2:1123855/148‑1 (MQ=255) ctctACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCa > 2:420990/1‑148 (MQ=255) ctctACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCa < 2:2490524/148‑1 (MQ=255) ctctACCTCTCCGGTACATCACAGCCAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCa > 2:1425375/1‑148 (MQ=255) tACCTCTCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTg < 1:2477413/148‑1 (MQ=255) ccTCTCCGGTACATCACAGCGAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGaa > 2:494434/1‑148 (MQ=255) ctctCCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAg < 2:1143850/148‑1 (MQ=255) tctcCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGa < 2:3304101/148‑1 (MQ=255) tctcCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGa < 2:1352531/148‑1 (MQ=255) tcCGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGata > 2:3022080/1‑148 (MQ=255) ccGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGatat < 1:2664645/148‑1 (MQ=255) ccGGTACATCACAGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGatat < 2:530492/148‑1 (MQ=255) cctCACAGCTAGACAGGTAGTAGTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGtt < 2:3229097/146‑1 (MQ=255) cacaGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGaa < 2:1147965/148‑1 (MQ=255) cacaGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGaa < 1:1553724/148‑1 (MQ=255) cacaGCTAGACAGTTATCATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGaa > 2:807604/1‑148 (MQ=255) cacaGCGAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGaa < 2:1960469/148‑1 (MQ=255) aGCTAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACaa < 2:3340391/148‑1 (MQ=255) ctagaCAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATa < 1:2024231/146‑1 (MQ=255) ctagaCAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATa > 2:2271851/3‑148 (MQ=255) ctagaCAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATa < 2:217691/146‑1 (MQ=255) tagaCAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATaa < 1:1888363/147‑1 (MQ=255) tagaCAGTTATTATTCTCTGAAGGACAGTTGGATTGGTTCATTCACTGCGACTCGCCCCGGTGCCTATTTACACGTATATAGCGGAAGGGCTGACTCGCGTTTTATGATCTACGCAGTGGGCTCTTTCGATATTCCGTTGATCAATaa < 2:2007671/147‑1 (MQ=255) aCAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAAcg < 2:207384/148‑1 (MQ=255) aCAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAAcg < 2:2372901/148‑1 (MQ=255) cAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAAcgc > 2:977892/1‑148 (MQ=255) aGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAAcgcg < 1:1109977/148‑1 (MQ=255) gTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAAcgcgc > 1:1240140/1‑148 (MQ=255) ttattaTTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAAcgcgcg > 2:1217596/1‑148 (MQ=255) tattatTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATAGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCgg > 1:941544/1‑148 (MQ=255) attattCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGt > 2:3305318/1‑148 (MQ=255) attattCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGt > 2:983622/1‑148 (MQ=255) tattCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTaa > 1:604921/1‑148 (MQ=255) ttCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACt > 1:1460278/1‑148 (MQ=255) tctcTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACtt < 1:1923287/148‑2 (MQ=255) tctcTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTa < 2:18634/148‑1 (MQ=255) ctGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATc > 1:892967/1‑148 (MQ=255) aaTGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGt > 2:2073957/1‑148 (MQ=255) aTGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTa < 1:1143969/148‑1 (MQ=255) ccAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATgg < 2:1287160/148‑1 (MQ=255) actgTTGGATTGGTTAATTCACTGCGACTCGCCACGGTGCCTCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATAGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATgg < 2:1376765/145‑1 (MQ=255) gTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCAt > 1:3183402/1‑148 (MQ=255) ttGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAACCGCGCGGTAACTAATCGGTCTGGCCTc > 1:3246917/1‑148 (MQ=255) tGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCg > 2:3416110/1‑148 (MQ=255) aaTGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAg < 1:1771064/148‑1 (MQ=255) aaTGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAg < 2:2582399/148‑1 (MQ=255) tgtttaattcaCTGCGACTCGCCACGTTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGtt < 1:3238785/142‑1 (MQ=255) gTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTAt > 2:3372420/1‑148 (MQ=255) attcaCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGGAACTAATCGGTATGGCATCGGAGTTATTCCa < 1:3019873/148‑1 (MQ=255) ttcaCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAt > 2:1111132/1‑148 (MQ=255) ttcaCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAt < 2:645021/148‑1 (MQ=255) ttcaCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAt > 2:3000375/1‑148 (MQ=255) caCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAtca < 1:3458896/148‑1 (MQ=255) caCTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAtca > 1:2394602/1‑148 (MQ=255) gCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAtcagtca > 2:285420/1‑148 (MQ=255) gCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAGGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCAtcagtca > 2:1086779/1‑148 (MQ=255) gACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATAAGTcagc < 1:1217596/148‑1 (MQ=255) cTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTcagcag > 2:1639967/1‑148 (MQ=255) cTCGCCACGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTcagcag > 2:1639996/1‑148 (MQ=255) tCGCCACGGGGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGt < 1:350077/148‑1 (MQ=255) gCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTa < 1:1111132/148‑1 (MQ=255) ccACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTCTGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTAc < 1:2815121/148‑1 (MQ=255) cGGTGCCGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATa < 2:2632529/148‑1 (MQ=255) ccGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATaacaac > 2:3119419/1‑148 (MQ=255) cGCTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACTCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAacaaca < 2:1583896/148‑1 (MQ=255) cTTTCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAAcatc > 2:2558938/1‑148 (MQ=255) tttCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAAcatca < 1:1670122/148‑1 (MQ=255) tttCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAAcatca < 1:1670672/148‑1 (MQ=255) ttCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAAcatcat > 2:2129316/1‑148 (MQ=255) ttCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAAcatcat < 2:1520650/148‑1 (MQ=255) tCCACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCAtt < 2:893610/148‑1 (MQ=255) ccACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGATCAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTa < 1:792410/148‑1 (MQ=255) ccACGACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTa < 1:792422/148‑1 (MQ=255) gACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAgtg < 2:3389389/148‑1 (MQ=255) gACTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAgtg < 1:59020/148‑1 (MQ=255) aCTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAgtgt < 1:2073957/148‑1 (MQ=255) aCTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAgtgt < 1:2329330/148‑1 (MQ=255) aCTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAgtgt < 2:1682963/148‑1 (MQ=255) aCTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAgtgt > 1:11466/1‑148 (MQ=255) aCTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAgtgt > 1:2733342/1‑148 (MQ=255) aCTATAGCGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTAACATAACAACATCATTAAgtgt < 2:2153959/148‑1 (MQ=255) cGGAAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAGTGTTGATAcc < 2:1460278/148‑1 (MQ=255) | GCCAGTTATCAGCATAATACCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCGAGACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCCACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAACAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACATCATTAAGTGTTGATACC > CP009273/3182589‑3182876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |