Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 3,334,687 | G→T | 100% | A21A (GCG→GCT) | kdsD → | D‑arabinose 5‑phosphate isomerase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 3,334,687 | 0 | G | T | 99.0% | 674.7 / ‑1.8 | 205 | A21A (GCG→GCT) | kdsD | D‑arabinose 5‑phosphate isomerase |
Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (116/87); total (117/88) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 205 total aligned reads displayed.
ATTATTAACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATGGCGGCA > CP009273/3334542‑3334831 | ttaACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGaa > 1:562485/1‑148 (MQ=255) ttaACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGaa > 1:561922/1‑148 (MQ=255) aCTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAGTAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGt < 1:2933117/148‑1 (MQ=255) aCTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGt < 1:1655557/148‑1 (MQ=255) tGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGa > 1:940741/1‑148 (MQ=255) ggCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGaa < 1:2704296/148‑1 (MQ=255) ggCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGaa > 1:3415682/1‑148 (MQ=255) ggCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGaa < 1:155488/148‑1 (MQ=255) cGGATTTATCGTATGGCTGGCGATGTTGTACTGGTGATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATg < 2:2146601/148‑1 (MQ=255) ttATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTgg < 2:1587884/148‑1 (MQ=255) ttATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTgg < 1:1707650/148‑1 (MQ=255) cGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGa > 2:1325815/1‑148 (MQ=255) cGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGa > 2:480049/1‑148 (MQ=255) tATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTCGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGc > 1:2033722/1‑148 (MQ=255) tggctggcGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCtt > 1:2860260/1‑148 (MQ=255) gctggcGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGa < 2:319527/148‑1 (MQ=255) tggcGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATc > 2:1735425/1‑148 (MQ=255) gcGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCaa > 1:1905919/1‑148 (MQ=255) gcGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCaa > 1:129935/1‑148 (MQ=255) gcGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCaa > 1:129850/1‑148 (MQ=255) cGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAAt < 2:774599/148‑1 (MQ=255) cGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAAt < 1:3076929/148‑1 (MQ=255) tgttgtACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACa > 2:2638969/1‑148 (MQ=255) gttgtACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACat < 1:1724977/148‑1 (MQ=255) gttgtACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACat > 2:3316082/1‑148 (MQ=255) tACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACatcaat < 2:3237469/148‑1 (MQ=255) aCTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACatcaatc < 2:2351517/148‑1 (MQ=255) tGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAg > 1:1099334/1‑148 (MQ=255) ggTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGATTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGa < 2:1189907/148‑1 (MQ=255) ggTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGa > 1:160859/1‑148 (MQ=255) ttATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAAt < 1:2907659/148‑1 (MQ=255) cAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGc > 1:853366/1‑148 (MQ=255) aaTACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCt < 1:235461/148‑1 (MQ=255) tACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTg > 2:262053/1‑148 (MQ=255) aCTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGc > 2:1048890/1‑148 (MQ=255) aCTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGc > 2:2485563/1‑148 (MQ=255) aCTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGc > 1:2583775/1‑148 (MQ=255) tCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCt > 1:1364260/1‑148 (MQ=255) cGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCtg > 1:670227/1‑148 (MQ=255) tGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGa < 2:2886181/148‑1 (MQ=255) gAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGaa > 1:839213/1‑148 (MQ=255) aaTAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGaaa > 2:1028406/1‑148 (MQ=255) aaTAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGaaa > 2:366251/1‑148 (MQ=255) aTAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGaaaa > 1:1534414/1‑148 (MQ=255) aTAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGaaaa > 2:1683322/1‑148 (MQ=255) cTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATg < 1:2638969/148‑1 (MQ=255) cTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATg > 1:1748787/1‑148 (MQ=255) cTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATg > 2:1405415/1‑148 (MQ=255) cTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATg > 1:3307740/1‑148 (MQ=255) cTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATg < 1:2968257/148‑1 (MQ=255) gAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTc > 2:458677/1‑148 (MQ=255) gAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTc > 2:2617941/1‑148 (MQ=255) aaaCGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCt > 1:304451/1‑148 (MQ=255) aCGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTgg > 2:2067492/1‑148 (MQ=255) gCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGgtg < 1:476235/148‑1 (MQ=255) gCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGgtg > 2:2619646/1‑148 (MQ=255) aTTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTTAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTa > 1:871331/1‑148 (MQ=255) aTTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTa > 1:1513986/1‑148 (MQ=255) tATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTaaa < 2:980242/148‑1 (MQ=255) tATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTaaa < 1:915816/148‑1 (MQ=255) tATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTaaa < 2:3297448/148‑1 (MQ=255) tATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTaaa < 2:1230746/148‑1 (MQ=255) gTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAggg > 1:278320/1‑148 (MQ=255) tCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGa > 1:1356117/1‑148 (MQ=255) cGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGaa < 1:1044973/148‑1 (MQ=255) cACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGACAAGAGGTTCTGGTGTAAAGGGACAg > 2:3084569/1‑148 (MQ=255) aCGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGt < 1:260397/148‑1 (MQ=255) cGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGtt > 1:700782/1‑148 (MQ=255) gTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTg < 1:486266/148‑1 (MQ=255) gTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTg < 1:486196/148‑1 (MQ=255) tAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTgt > 1:132489/1‑148 (MQ=255) aaCCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATggg > 2:1721338/1‑148 (MQ=255) gggTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATg > 1:3152437/1‑148 (MQ=255) gggTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATg > 1:3313412/1‑148 (MQ=255) ggTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATgg < 2:1675308/148‑1 (MQ=255) ggTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATgg < 2:33965/148‑1 (MQ=255) ggTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATgg > 2:2181446/1‑148 (MQ=255) gTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATggg > 1:3456107/1‑148 (MQ=255) tttGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGaa > 2:1619925/1‑148 (MQ=255) tttGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGaa > 2:1619745/1‑148 (MQ=255) gACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAAt < 2:260501/148‑1 (MQ=255) ttCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCggg < 2:561922/148‑1 (MQ=255) ttCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCggg < 2:562485/148‑1 (MQ=255) agcaagcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCa < 1:1412598/148‑1 (MQ=255) gcaagcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCat < 2:853366/148‑1 (MQ=255) gcaagcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCat > 1:21104/1‑148 (MQ=255) caagcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCata < 2:682538/148‑1 (MQ=255) caagcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCGTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGGTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCata < 2:10766/148‑1 (MQ=255) agcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATAtt > 2:2942659/1‑148 (MQ=255) agcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATAtt > 1:3156382/1‑148 (MQ=255) gcaTGTAAAGAAGTACTGGCTAGTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACTCTTGCCTGAGACAAGATGTTCTTGTGTAAAGGGAAATTTGTCGTCATGGTGATGGGAAAATCGGTGCATATTg > 2:2311924/1‑148 (MQ=255) gcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTg < 2:634115/148‑1 (MQ=255) gcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTg < 2:1656616/148‑1 (MQ=255) aaaGAAGTCCTGGCTCTGGAACGTGAATGCCTGGCGGAGCTTGATCCATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGTTGGTCGGGTGGCACGGGAAGGTTGTCGTCAGGGGGAGGGGCATTGCGGGGCATCGTGGGCGaa > 2:608704/1‑148 (MQ=255) agaagTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGaaaa > 1:2637828/1‑148 (MQ=255) agTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATg < 2:2561509/148‑1 (MQ=255) agTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATg > 1:735869/1‑148 (MQ=255) gTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATgg > 1:2292264/1‑148 (MQ=255) tCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATggc > 2:3225182/1‑148 (MQ=255) ggCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATGGCGGCa < 1:2493462/148‑1 (MQ=255) | ATTATTAACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATGGCGGCA > CP009273/3334542‑3334831 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |