| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,487,342 | C→T | 100% | intergenic (+234/‑28) | tsgA → / → nirB | putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,487,342 | 0 | C | T | 97.4% | 744.5 / 7.6 | 233 | intergenic (+234/‑28) | tsgA/nirB | putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding |
| Reads supporting (aligned to +/- strand): ref base C (2/4); new base T (125/102); total (127/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.77e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 233 total aligned reads displayed.
GTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGCGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTGAAGAA > CP009273/3487197‑3487486 | gTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTgg > 1:380357/1‑148 (MQ=255) cTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTa > 2:148708/1‑148 (MQ=255) cTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTa > 1:3228293/1‑148 (MQ=255) aTTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGCGGTAAt > 1:729839/1‑148 (MQ=255) tttttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATag > 1:2907425/1‑148 (MQ=255) tttttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATag > 1:886618/1‑148 (MQ=255) ttttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATaga > 1:3322727/1‑148 (MQ=255) tttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaa > 1:2071921/1‑148 (MQ=255) acaAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaaaagaa < 1:591237/148‑1 (MQ=255) acaAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaaaagaa < 1:2638139/148‑1 (MQ=255) aTGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAg > 1:2954508/1‑148 (MQ=255) aTGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAg < 1:568507/148‑1 (MQ=255) tGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAgg > 1:2415432/1‑148 (MQ=255) atatCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCaaa < 1:971867/148‑1 (MQ=255) atatCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCaaa > 2:761122/1‑148 (MQ=255) aTTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCaaa > 1:3007772/1‑148 (MQ=255) tCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGt < 1:2573731/148‑1 (MQ=255) tCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGt < 1:2573737/148‑1 (MQ=255) tCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGt > 2:3486789/1‑148 (MQ=255) gTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAg < 2:3004941/148‑1 (MQ=255) ttAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCg > 2:2764623/1‑148 (MQ=255) tAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGc > 2:741154/1‑148 (MQ=255) aaGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCa < 1:3273028/148‑1 (MQ=255) aGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCaa > 2:1186107/1‑148 (MQ=255) aGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATAGTTAAGGTAGGTTGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCaa < 1:2738353/148‑1 (MQ=255) aaaTTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTa < 2:54129/148‑1 (MQ=255) aaaTTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTa < 2:53471/148‑1 (MQ=255) aaaTTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTa > 1:3110724/1‑148 (MQ=255) aaTTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTAt > 2:2450547/1‑148 (MQ=255) tttATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCg > 1:2230243/1‑148 (MQ=255) aaaTCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACgg < 1:2477330/148‑1 (MQ=255) aTCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTa < 1:519913/148‑1 (MQ=255) tCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTAt > 1:2464142/1‑148 (MQ=255) atatACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCgg > 1:3356929/1‑148 (MQ=255) tataCCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGc > 1:64382/1‑148 (MQ=255) ataCCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTGGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGcc < 1:498328/148‑1 (MQ=255) aCCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCACTTATCGGTAACGGTATGGTCGGCCAt > 2:2386407/1‑148 (MQ=255) cccATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATc > 2:1159259/1‑148 (MQ=255) ccATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCg < 2:1771591/148‑1 (MQ=255) ccATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCg > 1:1657562/1‑148 (MQ=255) cATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGc < 2:1711065/148‑1 (MQ=255) aTTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCt < 2:1528515/148‑1 (MQ=255) aTTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCt < 2:717638/148‑1 (MQ=255) tAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCttt > 2:708925/1‑148 (MQ=255) atgAGTTTATAAAGGTTTTTTTGATTTACATCTATAAGCGGGGTTGCTTAATCTTTAAGGTAGGTGGTAATAGAAAAGTAATCGAGGCAAAAATGAGCAAAGTGAGACTCTCAATTATCGGTAACGGTATGGTCGGCCATCGATTTAt < 1:2493655/146‑1 (MQ=255) ggAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATc > 1:3055162/1‑148 (MQ=255) ggAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATc > 1:2918029/1‑148 (MQ=255) gTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGaa < 1:1914356/148‑1 (MQ=255) tatataAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAg > 2:1438458/1‑148 (MQ=255) tatataAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAg > 2:1781779/1‑148 (MQ=255) atataAAGTTGAATTTGTTTTACATCAATTATCGGGTTTGCTGAATCGTTAAGGTAGGTGTTAATAGAAAAGAAATAGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGa < 1:23897/148‑1 (MQ=255) atataAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGa > 2:159144/1‑148 (MQ=255) atataAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGa > 2:2514760/1‑148 (MQ=255) atataAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGa < 1:1805052/148‑1 (MQ=255) ataAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtc > 2:1875881/1‑148 (MQ=255) taAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtct > 1:3442483/1‑148 (MQ=255) taAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTAGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtct < 1:346892/148‑1 (MQ=255) acggTGAATTTGATTTACATCAATAAGCGGGGTTGCAGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtcttc < 2:2724398/146‑1 (MQ=255) aaGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtcttc < 2:364708/148‑1 (MQ=255) ggTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATcttctt > 1:2387095/1‑148 (MQ=255) ggTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATcttctt > 2:1687339/1‑148 (MQ=255) gTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTg > 2:750707/1‑148 (MQ=255) gTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTg > 1:2735479/1‑148 (MQ=255) tGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGa < 1:2123160/148‑1 (MQ=255) gAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGAt > 2:2562584/1‑148 (MQ=255) aTTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGCGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATaa < 2:387206/148‑1 (MQ=255) aTTTGATTTACATCAATAAGCGGGGTTGCTGAATAGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATaa > 2:1326394/1‑148 (MQ=255) tttGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATaaa > 1:1223133/1‑148 (MQ=255) ttGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAAt < 2:1050959/148‑1 (MQ=255) ttGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAAt > 2:1961332/1‑148 (MQ=255) ttGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAAt > 2:635625/1‑148 (MQ=255) ttGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAAt > 2:2666272/1‑148 (MQ=255) aTTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTg < 2:6486/148‑1 (MQ=255) cATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCg > 2:226227/1‑148 (MQ=255) aTCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCgg < 2:1598878/148‑1 (MQ=255) aTCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCgg > 2:3276587/1‑148 (MQ=255) tCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGc < 2:561073/148‑1 (MQ=255) tCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGc > 1:1336166/1‑148 (MQ=255) cAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGcc > 1:1190120/1‑148 (MQ=255) aaTAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCa > 2:2268806/1‑148 (MQ=255) aTAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCaa > 2:2353793/1‑148 (MQ=255) tAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAAc < 1:929322/148‑1 (MQ=255) tAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAAc > 1:768020/1‑148 (MQ=255) aaGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACt < 2:5903/148‑1 (MQ=255) aGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACtt > 2:2465544/1‑148 (MQ=255) gggTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGat > 1:1590772/1‑148 (MQ=255) ggTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGcc < 2:2011353/138‑1 (MQ=255) ttGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATAtt < 2:807506/148‑1 (MQ=255) ttGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATAtt < 2:3110724/148‑1 (MQ=255) tGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTa < 2:325463/148‑1 (MQ=255) gAATCGTTAAGGTAGGCGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGt < 1:3268799/148‑1 (MQ=255) aTCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGttt > 1:482619/1‑148 (MQ=255) tCGTTAAGGTAGGTGGTAAGAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGtttt < 2:2415658/148‑1 (MQ=255) cGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTc < 1:449785/148‑1 (MQ=255) tAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCtgt < 2:1400618/148‑1 (MQ=255) tAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCtgt < 1:3372181/148‑1 (MQ=255) gTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTgaag < 1:1532448/148‑1 (MQ=255) tAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTgaaga > 1:1049365/1‑148 (MQ=255) tAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTgaaga < 1:1481204/148‑1 (MQ=255) aGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCATAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTgaagaa < 1:2720016/148‑1 (MQ=255) | GTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGCGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTGAAGAA > CP009273/3487197‑3487486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |