Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 3,590,636 | G→T | 100% | Y95* (TAC→TAA) | livK ← | leucine transporter subunit |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 3,590,636 | 0 | G | T | 98.4% | 762.7 / 1.4 | 239 | Y95* (TAC→TAA) | livK | leucine transporter subunit |
Reads supporting (aligned to +/- strand): ref base G (2/2); new base T (124/111); total (126/113) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 239 total aligned reads displayed.
CCAGCCCGGCAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACGTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTGACGCGCGCCG > CP009273/3590491‑3590780 | ccAGCCCGGCAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTa < 2:1264895/148‑1 (MQ=255) cAGCCCGGCAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTAt > 2:2390517/1‑148 (MQ=255) cccGGCAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTa < 1:3455563/148‑1 (MQ=255) cccGGCAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACGTATTTa < 2:1744292/148‑1 (MQ=255) cGGCAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAAt < 1:269478/148‑1 (MQ=255) gCAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGc < 1:2379322/148‑1 (MQ=255) gCAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGc < 1:219208/148‑1 (MQ=255) cAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGcc < 1:963219/148‑1 (MQ=255) aCGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCa > 2:2167055/1‑148 (MQ=255) cGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCAGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCTGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCAt < 2:511427/148‑1 (MQ=255) aTAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTaa < 1:3499747/148‑1 (MQ=255) aaTGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACg > 2:3167937/1‑148 (MQ=255) aaTGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACg > 1:2299084/1‑148 (MQ=255) aaTGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACg < 1:1203461/148‑1 (MQ=255) gtgtTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGAtt > 1:1764298/1‑148 (MQ=255) gtgtTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGAtt > 1:921377/1‑148 (MQ=255) gtTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGAtttt > 1:468715/1‑148 (MQ=255) ttGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTttg > 2:2674185/1‑148 (MQ=255) ttGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTttg > 2:2889843/1‑148 (MQ=255) ttGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTttg > 2:3130295/1‑148 (MQ=255) ttGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTttg < 1:2665007/148‑1 (MQ=255) ttGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTttg > 1:3100509/1‑148 (MQ=255) tGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTttgt < 2:1218493/148‑1 (MQ=255) ccGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACGTATTTAATGCCGTCATTAACGATTTTGTTGGCGa > 1:660515/1‑148 (MQ=255) tGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCaa > 2:888392/1‑148 (MQ=255) gTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACgg > 2:742513/1‑148 (MQ=255) tCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGc > 2:937217/1‑148 (MQ=255) tCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGc < 2:3355952/148‑1 (MQ=255) cTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGt > 1:445877/1‑148 (MQ=255) cTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGt < 2:2925518/148‑1 (MQ=255) cTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGt > 2:635618/1‑148 (MQ=255) tCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGtt < 1:3039778/148‑1 (MQ=255) ccGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGttt < 1:3205781/148‑1 (MQ=255) ccGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGttt < 1:109935/148‑1 (MQ=255) ccGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGttt < 1:1661670/148‑1 (MQ=255) ccGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGttt < 1:1661753/148‑1 (MQ=255) cGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTc > 2:3386228/1‑148 (MQ=255) cGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTc > 1:806654/1‑148 (MQ=255) gggTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCg < 1:2349306/148‑1 (MQ=255) ggTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCgg > 2:3381424/1‑148 (MQ=255) tCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGcg < 1:835048/148‑1 (MQ=255) tCCCGGAGAGATCATCAGAATACCTTATTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGTACACAGATGACCAATAACTTATTTAATGCCTTCATTAACGATTTTGTTGGCGACCGCAACGGGTTGTTTCGGGTCGCATGcg < 1:1183247/148‑1 (MQ=255) cccGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGcgt < 1:2889843/148‑1 (MQ=255) cccGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGcgt < 1:1264578/148‑1 (MQ=255) gaTCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCatat > 2:169808/1‑148 (MQ=255) atcatcAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATAtt > 2:2492140/1‑148 (MQ=255) tcatcaGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTc > 2:1932019/1‑148 (MQ=255) caGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACg > 2:2347995/1‑148 (MQ=255) aaTACCTACGTCATCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGACATTAACGATTATGTTGGCGACCGCACCGGCTTGTATCGGGTCGCATGCGTCCTCATAGTACACGCCa > 2:2798803/1‑148 (MQ=255) tACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAAc < 2:1698314/148‑1 (MQ=255) tACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAAc < 2:1455432/148‑1 (MQ=255) tACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATGTAATGCCGTCATTAAAGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAAc > 1:3246071/1‑148 (MQ=255) aCCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAAcc > 2:3008875/1‑148 (MQ=255) ttCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGt > 1:2543716/1‑148 (MQ=255) ttCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACGTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGt > 1:2156501/1‑148 (MQ=255) tCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTAt > 1:2061330/1‑148 (MQ=255) ttCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCg > 2:1527371/1‑148 (MQ=255) cATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGcc < 1:2118493/148‑1 (MQ=255) aTAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGccc < 1:2610041/148‑1 (MQ=255) aTAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGccc < 1:1681863/148‑1 (MQ=255) tAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCt > 1:1876656/1‑148 (MQ=255) aGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCtt > 1:3415992/1‑148 (MQ=255) tatCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAAt < 1:506781/148‑1 (MQ=255) atCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAAtt > 1:3055744/1‑148 (MQ=255) tCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTc > 2:833503/1‑148 (MQ=255) cGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCt > 1:2424843/1‑148 (MQ=255) cGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCt < 2:686629/148‑1 (MQ=255) cAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCttt > 1:1448483/1‑148 (MQ=255) ggCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTgg < 1:1956740/148‑1 (MQ=255) ggCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTACCCCTATgg > 1:1877597/1‑148 (MQ=255) gCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGc < 2:2982299/148‑1 (MQ=255) gCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGc > 1:2524100/1‑148 (MQ=255) gCTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGc > 2:3138728/1‑148 (MQ=255) cTGGGTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCa < 1:3167891/148‑1 (MQ=255) ggTAGAAGAAGAACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTa > 1:2180582/1‑148 (MQ=255) agaagaagaACACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATg > 1:60883/1‑148 (MQ=255) gaagaagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGt < 2:445901/148‑1 (MQ=255) gaagaagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGt < 1:2256309/148‑1 (MQ=255) gaagaagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATCTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGt < 2:837633/148‑1 (MQ=255) aagaagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCTCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAAACAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTc < 2:2262748/148‑1 (MQ=255) aagaagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTcc > 1:1110045/1‑130 (MQ=255) aagaagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTcc < 2:1110045/130‑1 (MQ=255) agaagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCt < 1:3442569/148‑1 (MQ=255) agaagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCt > 2:1670227/1‑148 (MQ=255) aagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCttt > 1:1029261/1‑148 (MQ=255) aagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCttt > 2:1046759/1‑148 (MQ=255) aagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCttt > 2:2430853/1‑148 (MQ=255) aagaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCttt > 1:3257220/1‑148 (MQ=255) aagaaCACAGATGACCAATAACGTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCttt < 2:2442708/148‑1 (MQ=255) gaaCACAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTaa > 2:490185/1‑148 (MQ=255) acacAGATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAAtt > 2:2524424/1‑148 (MQ=255) gATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTg > 2:2104664/1‑148 (MQ=255) gATGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTg < 2:1767946/148‑1 (MQ=255) aTGACCAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTGa > 1:3396081/1‑148 (MQ=255) ccAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCt < 1:1797758/132‑1 (MQ=255) cAATAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTGAcgcgc > 1:311964/1‑148 (MQ=255) aTAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTGACgcgcgc > 1:2811700/1‑148 (MQ=255) aTAACTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTGACgcgcgc > 2:926266/1‑148 (MQ=255) aaCTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTGACGCGCGCCg < 1:2208431/148‑1 (MQ=255) aaCTTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTGACGCGCGCCg < 1:1517810/148‑1 (MQ=255) | CCAGCCCGGCAGTACGCATAATGTGTTGATAACCGCGTTGGGTCAGCTCCGGGTTGGTCGCTCCCGGCGAGATCATCAGAATACCTTCGTCTTCATAGATATCTGACGCAGGCTGGGTAGAAGAAGAACACAGATGACCAATAACGTATTTAATGCCGTCATTAACGATTTTGTTGGCGACCGCAACGGCTTGTTTCGGGTCGCATGCGTCGTCATATTCCACGCCAACCAGTTTATCGCCCTTAATTCCCCCTTTGGCATTAATGTCTTTAATTGCCTGACGCGCGCCG > CP009273/3590491‑3590780 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |