| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,693,083 | G→T | 100% | V504F (GTT→TTT) | bcsG → | DUF3260 family inner membrane protein associated with cellulose production |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,693,083 | 0 | G | T | 99.5% | 700.4 / ‑4.3 | 216 | V504F (GTT→TTT) | bcsG | DUF3260 family inner membrane protein associated with cellulose production |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (103/112); total (104/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 218 total aligned reads displayed.
TGGCCTACGTGATATCCCTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATTCTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCGTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGC > CP009273/3692938‑3693226 | tGGCCGACGTGATATCCCTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCttt < 2:2651266/148‑1 (MQ=255) gCCTACGTGATATCCCTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTtct > 1:1235318/1‑148 (MQ=255) cTACGTGATATCCCTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCg < 1:51795/148‑1 (MQ=255) cTACGTGATATCCCTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCg < 1:2843032/148‑1 (MQ=255) cTACGTGATATCCCTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCg < 2:2795967/148‑1 (MQ=255) tACGTGATATCCCTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGa < 1:2704635/148‑1 (MQ=255) tACGTGATATCCCTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGa < 1:1802975/148‑1 (MQ=255) cTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGAtttt < 2:476215/148‑1 (MQ=255) cccGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCAcc > 1:1350901/1‑148 (MQ=255) cGTCTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGa > 2:2210546/1‑148 (MQ=255) cTATCACCGTCGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCTCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGa < 2:2700320/148‑1 (MQ=255) cTATCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGa < 1:2717916/148‑1 (MQ=255) aTCACCGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACa < 1:665291/148‑1 (MQ=255) ccGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGt < 2:326903/148‑1 (MQ=255) ccGACGTCCCCGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGt < 2:2098149/148‑1 (MQ=255) ccccGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAGGACAATGTTGACTgg > 1:2820091/1‑148 (MQ=255) cccGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGa > 1:132044/1‑148 (MQ=255) cccGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGa > 1:1172551/1‑148 (MQ=255) ccGTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGACTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGaa > 2:147386/1‑148 (MQ=255) gTTGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGaaaa > 2:2857303/1‑148 (MQ=255) ttGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGaaaaa < 1:2090686/148‑1 (MQ=255) tGGGGTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGaaaaaa > 2:1855555/1‑148 (MQ=255) gTGAAATACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCa > 2:2030766/1‑148 (MQ=255) aaaTACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCa > 2:756009/1‑148 (MQ=255) aaTACTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAg < 1:2406410/148‑1 (MQ=255) atacttcGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGt > 2:1698710/4‑148 (MQ=255) tacttcGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTg < 1:2467678/146‑1 (MQ=255) cttcGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTggg > 2:82742/1‑148 (MQ=255) ttcGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGt > 1:892825/1‑148 (MQ=255) tcGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGtt > 1:2670718/1‑148 (MQ=255) cGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTg < 1:1012314/148‑1 (MQ=255) gCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGcc > 2:1926244/1‑148 (MQ=255) gCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGcc < 1:321539/148‑1 (MQ=255) tGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCcaca > 1:3306335/1‑148 (MQ=255) aaGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACaaa > 2:1022916/1‑148 (MQ=255) aGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAAc < 1:726780/148‑1 (MQ=255) cACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGc < 2:1856739/148‑1 (MQ=255) cACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGc < 2:3403715/148‑1 (MQ=255) aCCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCa < 2:2551225/148‑1 (MQ=255) ccGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCAc > 1:857020/1‑148 (MQ=255) cGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCAcc > 1:1412225/1‑148 (MQ=255) gCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCg < 2:3099694/148‑1 (MQ=255) cAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGtct < 2:790213/148‑1 (MQ=255) cAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGtct < 2:573301/148‑1 (MQ=255) cAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGtct < 2:3429459/148‑1 (MQ=255) aGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGtctc < 1:3074861/148‑1 (MQ=255) ggggCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCg > 1:697050/1‑148 (MQ=255) ggggCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCg > 1:1156279/1‑148 (MQ=255) cACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGaa < 2:1013146/148‑1 (MQ=255) cACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGaa < 2:357181/148‑1 (MQ=255) aCCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAAc > 1:408772/1‑148 (MQ=255) aCCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAAc > 1:408897/1‑148 (MQ=255) ccGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACt < 2:1190011/148‑1 (MQ=255) cGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTc > 1:2745672/1‑148 (MQ=255) aTTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCaa < 1:1056269/148‑1 (MQ=255) aTTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCaa < 2:1522513/148‑1 (MQ=255) aTTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCaa < 1:3131872/148‑1 (MQ=255) ttGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCaaa > 2:1256137/1‑148 (MQ=255) ttGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCaaa > 1:1333497/1‑148 (MQ=255) tCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGc < 2:2928321/148‑1 (MQ=255) cATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCa < 1:3081229/148‑1 (MQ=255) cGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCagta < 2:678307/148‑1 (MQ=255) cGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCagta < 1:167291/148‑1 (MQ=255) gAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCCCCGAGAACTCAAATGCagtag < 2:1017084/148‑1 (MQ=255) aacaacCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCagtagt > 2:1460276/1‑148 (MQ=255) aacaacCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCagtagt > 1:1745933/1‑148 (MQ=255) acaacCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGtt > 2:488735/1‑148 (MQ=255) caacCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTa < 1:3382264/148‑1 (MQ=255) aacCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTAt > 1:37116/1‑148 (MQ=255) aacCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTAt > 2:3254656/1‑148 (MQ=255) aacCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTAt > 1:1584290/1‑148 (MQ=255) aacCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTAt > 2:1761632/1‑148 (MQ=255) aacCGAGCAGCTTCCTGACTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTAt < 1:146973/148‑1 (MQ=255) acCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTAtt < 1:1854231/148‑1 (MQ=255) cagcTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATAc > 2:1460398/1‑148 (MQ=255) cagcTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATAc > 1:2670479/1‑148 (MQ=255) agcTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATAcc > 1:2806869/1‑148 (MQ=255) agcTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATAcc < 1:2891877/148‑1 (MQ=255) cTTCCTTGCAATCTCCGATCTGGAGGTTCGCTTTCTCGATGGCAAGATATTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCTGTCTCCGAGAACTCAAATGCAGTATTTATTAAATAACAg > 2:1623823/1‑148 (MQ=255) cTTCCTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAg > 2:1623624/1‑148 (MQ=255) ccTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGACAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGAt < 2:1942124/148‑1 (MQ=255) cTGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATa > 1:581712/1‑148 (MQ=255) tGGCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATaa > 2:1248535/1‑148 (MQ=255) ggCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATaaa < 1:2210546/148‑1 (MQ=255) gCTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAAc < 1:1919192/148‑1 (MQ=255) cTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAAcc < 1:1313693/148‑1 (MQ=255) cTATCTCCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAAcc < 1:3061152/148‑1 (MQ=255) tctcCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTa < 2:3426890/148‑1 (MQ=255) ctcCGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTAc > 1:2597486/1‑148 (MQ=255) ccGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGt > 2:165516/1‑148 (MQ=255) ccGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGt < 2:521822/148‑1 (MQ=255) ccGATCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACGCAAATGCAGTAGGTATTCAAGACCAGGCTCAGccgtccgt > 2:1953183/1‑148 (MQ=255) tCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGc > 1:3242375/1‑148 (MQ=255) tCTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGc > 2:3454652/1‑148 (MQ=255) cTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGcc < 2:1060855/148‑1 (MQ=255) cTGGTGGTTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGcc < 2:1832928/148‑1 (MQ=255) gtggtTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGa < 1:2615547/148‑1 (MQ=255) tggtTCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTTTTCAATACCAGGATAAACCGTACGTTCGCCTGaa > 1:2498761/1‑148 (MQ=255) ttCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAATTGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAAcgg > 1:1067468/1‑148 (MQ=255) ttCGCTTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTCCGTTCGCCTGAAcgg > 2:1867116/1‑148 (MQ=255) | TGGCCTACGTGATATCCCTAGCCCGTCTATCACCGACGTCCCCGTTGGGGTGAAATTCTTCGGCATGAAGGCACCGCATCAGGGGGCACCGATTGTCATCGAACAACCGAGCAGCTTCCTGGCTATCTCCGATCTGGTGGTTCGCGTTCTCGATGGCAAGATTTTCACCGAAGACAATGTTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGC > CP009273/3692938‑3693226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |