| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,882,377 | C→A | 93.0% | T96T (ACC→ACA) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,882,377 | 0 | C | A | 93.0% | 601.7 / 35.4 | 217 | T96T (ACC→ACA) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (10/5); new base A (82/118); total (94/123) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.19e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
Only 100 of 217 total aligned reads displayed.
TCGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAG > CP009273/3882232‑3882521 | tCGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAAt < 2:1473637/148‑1 (MQ=255)tCGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAAt > 2:1813959/1‑148 (MQ=255) cGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAAtt < 2:1160484/148‑1 (MQ=255) cGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAAtt < 1:184436/148‑1 (MQ=255) gATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTc > 1:2582338/1‑148 (MQ=255) aTTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTcc > 1:1503836/1‑148 (MQ=255) tttACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCg < 1:3315953/148‑1 (MQ=255) cTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTc < 1:2321470/148‑1 (MQ=255) cTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTc < 2:190703/148‑1 (MQ=255) gACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCAc < 1:2369203/148‑1 (MQ=255) aCCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCAcc > 2:3037739/1‑148 (MQ=255) gACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAgg > 1:126518/1‑148 (MQ=255) gACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAgg < 2:931773/148‑1 (MQ=255) aCAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAggg > 2:1656755/1‑148 (MQ=255) aCAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAggg > 2:2061722/1‑148 (MQ=255) cAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGc > 1:2400203/1‑148 (MQ=255) cAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGc > 1:2397547/1‑148 (MQ=255) gCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCg < 2:3241667/148‑1 (MQ=255) cGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGt > 1:670309/1‑148 (MQ=255) cGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGt > 1:2813902/1‑148 (MQ=255) cGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTATCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACACTTCCGACTCACCAGGGCCGTGGCGCa < 1:1903050/148‑1 (MQ=255) ggggCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCag < 2:1262876/148‑1 (MQ=255) ggCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCagag < 2:1899272/148‑1 (MQ=255) ggTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCaa < 1:3002927/148‑1 (MQ=255) ggTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCaa < 2:2583791/148‑1 (MQ=255) gTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCaaa < 1:308482/148‑1 (MQ=255) tGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAAt < 2:1841095/148‑1 (MQ=255) aCGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCt > 1:30943/1‑148 (MQ=255) aCGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCt < 2:1376600/148‑1 (MQ=255) gagCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATAtt < 1:1050663/148‑1 (MQ=255) agCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTc < 1:809696/148‑1 (MQ=255) gCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTcc > 2:2391632/1‑148 (MQ=255) cATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCg > 1:1044304/1‑148 (MQ=255) cATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCg > 2:464379/1‑148 (MQ=255) cATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCg > 1:626065/1‑148 (MQ=255) tGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGt < 2:438129/148‑1 (MQ=255) tGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGt > 2:877880/1‑148 (MQ=255) gCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTa < 1:2154429/148‑1 (MQ=255) ggCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTg > 2:296193/1‑148 (MQ=255) cTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGAt < 2:876443/148‑1 (MQ=255) cGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTaa > 1:1924892/1‑148 (MQ=255) gatgatGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTaaa < 2:3058333/148‑1 (MQ=255) tgatgCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTaaaaa > 1:1960507/1‑148 (MQ=255) tgatgCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTaaaaa < 1:71010/148‑1 (MQ=255) gatgCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTaaaaaa < 1:1448159/148‑1 (MQ=255) gcggcgACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGa < 2:270014/148‑1 (MQ=255) tACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGcc > 2:3055271/1‑148 (MQ=255) tACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGcc < 1:2773797/148‑1 (MQ=255) tACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGcc < 2:2968924/148‑1 (MQ=255) cGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGAt > 2:574612/1‑148 (MQ=255) cAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCgc > 2:3468991/1‑148 (MQ=255) gCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAAt < 2:1112868/148‑1 (MQ=255) gCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAAt < 2:3117131/148‑1 (MQ=255) gCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAAt < 2:2865238/148‑1 (MQ=255) gCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAAt > 2:1123641/1‑148 (MQ=255) ctaTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAAtggtg < 2:3322607/148‑1 (MQ=255) taTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAAtggtgg > 1:1321757/1‑148 (MQ=255) gCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGt > 1:1660354/1‑148 (MQ=255) cGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGtt > 2:3513720/1‑148 (MQ=255) cGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGtt > 2:427253/1‑148 (MQ=255) aGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTctct < 2:989836/148‑1 (MQ=255) gCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTa > 1:2455931/1‑148 (MQ=255) gCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTa < 1:3470796/148‑1 (MQ=255) ccGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTaa < 2:2684631/148‑1 (MQ=255) cGAGTCAGTGAAAAATATCTTTGTTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATATATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCTCAGCAAAATGGTGGCGTTCTCTAAc < 2:36519/148‑1 (MQ=255) cGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAAc > 1:570375/1‑148 (MQ=255) gAGTCAGTGAAAAATATCTTTGGTAATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACt < 2:707233/148‑1 (MQ=255) cAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAttt > 1:1438197/1‑148 (MQ=255) cAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAttt < 2:2242428/148‑1 (MQ=255) cAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAttt < 2:1609825/148‑1 (MQ=255) aGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAACATGGTGGCGTTCTCTAACTATTTc < 1:3037739/148‑1 (MQ=255) gTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCt < 2:2770191/148‑1 (MQ=255) tGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGTCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCtt > 1:115148/1‑148 (MQ=255) gAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCttt > 1:1516320/1‑148 (MQ=255) aaaaaTATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTg > 1:2481337/1‑148 (MQ=255) aaaaTATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGa > 2:3363317/1‑148 (MQ=255) aaaTATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGAt > 1:961582/1‑148 (MQ=255) aaTATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATa > 1:2065670/1‑148 (MQ=255) atatCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAc < 2:2815230/148‑1 (MQ=255) atatCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAc > 1:52687/1‑148 (MQ=255) atatCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAc > 1:398342/1‑148 (MQ=255) tatCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAcc > 1:174474/1‑148 (MQ=255) tatCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAcc < 2:2379651/148‑1 (MQ=255) atCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCa < 1:2838064/148‑1 (MQ=255) atCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCa > 1:389909/1‑148 (MQ=255) tCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCAc > 2:1565627/1‑148 (MQ=255) tCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCAc > 1:928622/1‑148 (MQ=255) ttGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCACAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCa > 2:2498905/1‑148 (MQ=255) ttGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCa > 2:2206742/1‑148 (MQ=255) ttGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCa > 2:410870/1‑148 (MQ=255) ggTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAgg < 1:2941912/148‑1 (MQ=255) ggTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAgg < 1:2941720/148‑1 (MQ=255) ttATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGc < 2:645044/148‑1 (MQ=255) aTCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCa < 1:431086/148‑1 (MQ=255) tCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCAt < 2:2790042/148‑1 (MQ=255) cAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATa < 1:121591/148‑1 (MQ=255) cAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATa < 1:11778/148‑1 (MQ=255) cAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATa > 1:1054356/1‑148 (MQ=255) aTACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGc > 1:3511019/1‑148 (MQ=255) tACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCCGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGcc < 2:2080274/148‑1 (MQ=255) | TCGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAG > CP009273/3882232‑3882521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |