| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,931,021 | C→A | 100% | A123E (GCG→GAG) | rbsK → | ribokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,931,021 | 0 | C | A | 98.7% | 755.7 / 0.8 | 239 | A123E (GCG→GAG) | rbsK | ribokinase |
| Reads supporting (aligned to +/- strand): ref base C (3/0); new base A (126/109); total (130/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 239 total aligned reads displayed.
GCAGCTCGCCACTGATAACATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGCGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAACCCGGCTCCG > CP009273/3930878‑3931160 | cagcTCGCCACTGATAACATTGATATTACTCCGGACAGCGTGATCAAAGGCGAATCAACAGGTGTTGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCagg > 2:3126709/1‑148 (MQ=255) agcTCGCCACTGATAACATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCtggt < 1:2558878/148‑1 (MQ=255) gCCACTGATAACATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAg < 2:3393724/148‑1 (MQ=255) tGATAACATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCaa < 1:3172286/148‑1 (MQ=255) gATAACATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAAc > 2:2758647/1‑148 (MQ=255) aTAACATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACg > 2:3047904/1‑148 (MQ=255) tAACATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGt > 1:2186884/1‑148 (MQ=255) tAACATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGt > 1:1625123/1‑148 (MQ=255) cATTGATATTACTCCGGTCAGGGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGAGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAg < 1:1586595/148‑1 (MQ=255) cATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGACGCGCAACGTGAg > 2:2943332/1‑148 (MQ=255) aTTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGc < 2:1945116/148‑1 (MQ=255) aTTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGc > 1:2464348/1‑148 (MQ=255) ttGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCg < 1:1917439/148‑1 (MQ=255) ttGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCg > 2:1953555/1‑148 (MQ=255) tGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGt > 1:931506/1‑148 (MQ=255) tGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGt > 1:1440584/1‑148 (MQ=255) tGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGt > 1:3186035/1‑148 (MQ=255) ttACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGc > 1:568504/1‑148 (MQ=255) tCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAAc > 1:3309785/1‑148 (MQ=255) tCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAAc > 2:197430/1‑148 (MQ=255) ccGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCTAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAAcg < 1:1293013/148‑1 (MQ=255) ggTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAAcgcg < 2:734272/148‑1 (MQ=255) tCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTc < 1:3312346/148‑1 (MQ=255) cAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCa > 1:2706456/1‑148 (MQ=255) cGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCa > 1:441431/1‑148 (MQ=255) cGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCa > 2:1617775/1‑148 (MQ=255) cGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCa < 2:1779236/148‑1 (MQ=255) tGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATTCCGGCGCAAATGCAGCCCTTTCCCCCGAGCTGGTGGAAGCGCCACGTGAGCCTATTGCCAACCCGTCACCaat > 1:312776/1‑146 (MQ=255) tGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCatt < 2:1317732/148‑1 (MQ=255) gATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCatta > 1:1763159/1‑148 (MQ=255) aTCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCattat < 2:267616/148‑1 (MQ=255) cAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCAttatta > 2:2432657/1‑148 (MQ=255) cAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCAttatta < 1:3216758/148‑1 (MQ=255) cAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCAttatta < 1:3217085/148‑1 (MQ=255) aGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATg > 2:190699/1‑148 (MQ=255) aGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATg > 2:192706/1‑148 (MQ=255) aaTCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCt > 1:990189/1‑148 (MQ=255) aaTCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCt > 1:2263575/1‑148 (MQ=255) cAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGa < 1:287182/148‑1 (MQ=255) aCATGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAAt > 1:660453/1‑148 (MQ=255) gtgtGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATTTCATCGGTATTAATGCCGGCGCTAATTCTGCCCTTTACCCGGAGCTGGTGGAAGCGCAACCTGAGCGTATTGCCAACGCGTCAGCATTATTAATTCAGCTGGAATaacc > 1:629095/1‑148 (MQ=255) gtgtGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATcacc < 1:337912/148‑1 (MQ=255) tgtgGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATcacca > 1:838962/1‑148 (MQ=255) gcgcTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCg > 2:1609916/1‑148 (MQ=255) cTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGaaa > 1:2196617/1‑148 (MQ=255) gATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAgt > 1:2747436/1‑148 (MQ=255) gATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAgt > 2:2042829/1‑148 (MQ=255) gATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAgt < 2:302480/148‑1 (MQ=255) ttGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGAt < 1:2732769/148‑1 (MQ=255) ttAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGc > 1:793600/1‑148 (MQ=255) tGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAgcg > 1:1320880/1‑148 (MQ=255) gCGAAGGTGAGAATGTCATCGGCATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAgcggc > 1:231414/1‑148 (MQ=255) cGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAgcggcg > 2:2927585/1‑148 (MQ=255) gAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGa < 2:68652/148‑1 (MQ=255) aGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGaaa > 2:639325/1‑148 (MQ=255) aGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGaaa > 2:2403879/1‑148 (MQ=255) aGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGaaa < 1:1406762/148‑1 (MQ=255) ggTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGaaaa < 2:3051627/148‑1 (MQ=255) ggTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGaaaa < 2:2340734/148‑1 (MQ=255) gTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAAt > 2:2638845/1‑148 (MQ=255) tGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATc > 2:461193/1‑148 (MQ=255) gaATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGcc > 2:2116040/1‑148 (MQ=255) gaATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGcc > 2:3328801/1‑148 (MQ=255) gaATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGcc > 1:1810994/1‑148 (MQ=255) aaTGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGccc < 1:1722237/148‑1 (MQ=255) gTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATc > 2:1733435/1‑148 (MQ=255) gTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATc < 1:2256976/148‑1 (MQ=255) tCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCa > 2:1971040/1‑148 (MQ=255) aTCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCaaa < 1:1062180/148‑1 (MQ=255) aTCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCAAACGCGTCATCATTATTATTGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCaaa < 1:614612/148‑1 (MQ=255) tCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCaaaa > 1:2850704/1‑148 (MQ=255) gTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATaa > 2:2096408/1‑148 (MQ=255) tATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAg < 1:1970242/148‑1 (MQ=255) tATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAg < 1:197430/148‑1 (MQ=255) aTTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGa > 2:2190824/1‑148 (MQ=255) aTTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGa > 2:1198605/1‑148 (MQ=255) aTTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGa > 2:110292/1‑148 (MQ=255) ttCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGAc < 2:3224662/148‑1 (MQ=255) ttCATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGAc > 2:1139060/1‑148 (MQ=255) tCATGCCGGCGCTAATGCTGCCCTTTCCCCGGGGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACt > 1:1878013/1‑148 (MQ=255) cATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTa > 1:3406420/1‑148 (MQ=255) cATGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTa < 2:3017586/148‑1 (MQ=255) aTGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTAt < 2:2464348/148‑1 (MQ=255) tGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATc > 1:3355092/1‑148 (MQ=255) tGCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATc > 2:410288/1‑148 (MQ=255) gCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCg > 1:2647282/1‑148 (MQ=255) gCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCg > 1:1007592/1‑148 (MQ=255) gCCGGCGCTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGAATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCg > 1:2647362/1‑148 (MQ=255) gcTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTgcgc < 1:971456/148‑1 (MQ=255) cTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCt < 2:3408427/148‑1 (MQ=255) cTAATGCTGCCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCt > 1:1918305/1‑148 (MQ=255) tgctgcCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAAc > 2:2329094/1‑148 (MQ=255) tgctgcCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAAc > 2:2327640/1‑148 (MQ=255) gcCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAACccgg < 2:863835/148‑1 (MQ=255) gcCCTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGGATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAACccgg < 2:1000687/148‑1 (MQ=255) ccTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAACccggct < 1:522730/148‑1 (MQ=255) cTTTCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAACccggctc < 2:3389343/148‑1 (MQ=255) tttCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAACccggctcc > 2:1245419/1‑148 (MQ=255) ttCCCCGGCGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAACccggctccg > 1:2527295/1‑148 (MQ=255) ttCCCCGGAGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAACccggctccg > 2:852682/1‑148 (MQ=255) | GCAGCTCGCCACTGATAACATTGATATTACTCCGGTCAGCGTGATCAAAGGCGAATCAACAGGTGTGGCGCTGATTTTTGTTAATGGCGAAGGTGAGAATGTCATCGGTATTCATGCCGGCGCTAATGCTGCCCTTTCCCCGGCGCTGGTGGAAGCGCAACGTGAGCGTATTGCCAACGCGTCAGCATTATTAATGCAGCTGGAATCACCACTCGAAAGTGTGATGGCAGCGGCGAAAATCGCCCATCAAAATAAGACTATCGTTGCGCTTAACCCGGCTCCG > CP009273/3930878‑3931160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |