| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,958,909:1 | +T | 100% | coding (82/1266 nt) | rhlB ← | ATP‑dependent RNA helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,958,909 | 1 | . | T | 92.3% | 794.4 / 67.9 | 261 | coding (82/1266 nt) | rhlB | ATP‑dependent RNA helicase |
| Reads supporting (aligned to +/- strand): ref base . (8/12); new base T (134/106); total (142/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
Only 100 of 292 total aligned reads displayed.
AATCGCAGGATGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCT > CP009273/3958760‑3959055 | aaTCGCTGGATGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACTGTTATGAAAccc < 1:4147879/150‑1 (MQ=255)aaTCGCAGGATGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAAccc > 2:5084483/1‑150 (MQ=255) cGCAGGATGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑ttt < 2:243158/150‑1 (MQ=255) cGCAGGATGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑ttt > 2:574143/1‑150 (MQ=255) cGCAGGATGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑ttt < 2:1907578/150‑1 (MQ=255) gCAGGATGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑tttt < 2:1090588/150‑1 (MQ=255) ggATGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑ttttttt < 2:4593618/150‑1 (MQ=255) aTGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑ttttttt‑tt < 2:2502561/150‑2 (MQ=255) gagagagaAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑ttttttt‑tttc > 1:584837/1‑147 (MQ=255) gagagagaAGAGAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑TTTTTTT‑TCaa < 2:4455692/150‑1 (MQ=255) agagagaAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑ttttttt‑ttcaa > 2:1579505/1‑146 (MQ=255) agagaAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAgg > 2:3322995/1‑150 (MQ=255) agaTAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTc > 2:4094867/1‑150 (MQ=255) gaTAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCt < 2:4891888/150‑1 (MQ=255) tAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTAc > 1:1632235/1‑150 (MQ=255) tAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTAc > 1:497277/1‑150 (MQ=255) aaTGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACa > 1:3185432/1‑150 (MQ=255) aaTGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACa < 2:2880105/150‑1 (MQ=255) tGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAAc > 2:2020642/1‑150 (MQ=255) tGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAAc < 1:2943062/150‑1 (MQ=255) tGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAAc > 2:3550495/1‑150 (MQ=255) aaaCGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCt > 1:3080266/1‑150 (MQ=255) taCGCTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCtt > 2:3708428/2‑150 (MQ=255) aCGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTc < 2:1288782/150‑1 (MQ=255) cGTTGACGTAAGAACCGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCg < 2:238458/150‑1 (MQ=255) cGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCg > 2:3878704/1‑150 (MQ=255) gTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCgg > 1:1268046/1‑150 (MQ=255) gTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCgg > 1:353902/1‑150 (MQ=255) tGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGAt > 2:3391335/1‑150 (MQ=255) aCGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGc < 2:3113814/150‑1 (MQ=255) aCGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCa < 1:1042994/150‑1 (MQ=255) cGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCa > 2:1663721/1‑150 (MQ=255) aGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGc > 2:1047280/1‑150 (MQ=255) aaaCGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGa < 1:4460471/150‑1 (MQ=255) cGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGt < 2:1528153/150‑1 (MQ=255) gCCATCGTTTGCCCGGTACCGGTTTGCGCCGGCCCGGCGACGTCACGACCCGCCAGCGTCAGCGGACGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTc < 2:4409058/150‑1 (MQ=255) accATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCg > 2:3452335/2‑150 (MQ=255) ccATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCg > 1:5156113/1‑150 (MQ=255) ccATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCg > 1:2373528/1‑150 (MQ=255) ccATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGAGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCg > 1:3973958/1‑150 (MQ=255) aTCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGa > 1:1180648/1‑150 (MQ=255) ttttCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAAc > 2:3977682/1‑150 (MQ=255) ttCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCTGCGGAAGGGACAGTGCCTTAATGGGCGTACTGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACtt < 1:765233/150‑1 (MQ=255) ttCCCGGTACCGGTTTGCGCCTGCCCGGCAACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTACTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACtt > 2:2539144/1‑150 (MQ=255) ccGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTctgttctgtt > 1:4304213/1‑150 (MQ=255) tttGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTaaa > 1:4579415/1‑150 (MQ=255) tGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTGCTGTGCTGTTAAAt > 1:4356974/1‑150 (MQ=255) cgcCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAtgtg < 2:42457/150‑1 (MQ=255) gcCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATgtgt < 1:2061080/150‑1 (MQ=255) tGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGtttt > 1:273187/1‑150 (MQ=255) tGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGtttt > 1:3783356/1‑150 (MQ=255) agtcTACGTCACGACGCGCCTCGGTCAGAGGAAGGGCCTTTGACTGAATTGGCTTACATTTATGAAACCC‑‑TTTTTTTGTCAAGGGCTTCTACAACGTTCGGATGCAGGGCGTAGTCGGATAACTTCTGTTCTGTTAAATGTGTTTTGCTc < 2:2937177/147‑1 (MQ=255) ggCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCa < 2:3075108/150‑1 (MQ=255) gCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCAt > 1:1765527/1‑150 (MQ=255) cTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATa < 1:612770/150‑1 (MQ=255) cTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATa > 2:602149/1‑150 (MQ=255) gTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAgtgt > 1:96682/1‑150 (MQ=255) gTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAgtgt < 1:1969903/150‑1 (MQ=255) gTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAgtgt > 1:3343701/1‑150 (MQ=255) aCGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGt < 1:1742888/150‑1 (MQ=255) aCGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGt > 1:4230551/1‑150 (MQ=255) gACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAg < 2:501751/150‑1 (MQ=255) ccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAat < 1:1235923/150‑1 (MQ=255) cGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAata < 2:1333123/150‑1 (MQ=255) aGCGTCAGCGGAAGGGCCAGTGCCTGTATGGGCGTACAGTTAGGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAg < 1:1777639/150‑1 (MQ=255) aGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAg < 1:387811/150‑1 (MQ=255) cGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGc > 1:4291521/1‑150 (MQ=255) cGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGGTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCt > 1:2697175/1‑150 (MQ=255) gTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCt > 1:110046/1‑150 (MQ=255) tCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTa > 1:1881578/1‑150 (MQ=255) cGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTAt > 2:1447953/1‑150 (MQ=255) ggAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAATACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTAtt < 2:4802254/150‑1 (MQ=255) gAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTg > 2:3920274/1‑150 (MQ=255) aaGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGc > 2:4011187/1‑150 (MQ=255) aaGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCAGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGc > 1:668648/1‑150 (MQ=255) gCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTa > 1:4197286/1‑150 (MQ=255) cAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACg < 1:389513/150‑1 (MQ=255) cAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACg > 1:114897/1‑150 (MQ=255) cAGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACg < 1:1579505/150‑1 (MQ=255) aGTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGa < 2:2127568/150‑1 (MQ=255) gTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGaa < 2:2258529/150‑1 (MQ=255) gTGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGaa < 2:3810372/150‑1 (MQ=255) tGCCTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGaaa > 1:4087641/1‑150 (MQ=255) ccTGAATGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGc < 1:2534581/150‑1 (MQ=255) ccTGAATGGGCGTACAGTTATGAAACCC‑‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCg < 1:2458169/150‑1 (MQ=255) aaTGGGCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTAt > 1:2276876/1‑150 (MQ=255) aTGGGCGTACAGTTATGAAACCC‑‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATcc > 1:172/1‑150 (MQ=255) ggCGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCgg > 2:3241381/1‑150 (MQ=255) cGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTg > 1:3597073/1‑150 (MQ=255) cGTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTg < 2:159026/150‑1 (MQ=255) gTACAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGa < 1:892702/150‑1 (MQ=255) cAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCTGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTTTGGTAGAATATCAGCTTACAATTGCTTTACGAAAGCGTATCCGGTGAAAt > 1:4867063/1‑150 (MQ=255) cAGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAAt < 2:1223190/150‑1 (MQ=255) aGTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATa > 2:1864493/1‑150 (MQ=255) gTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTTCGAAAGCGTATCCGGTGAAATaa > 2:3028789/1‑150 (MQ=255) gTTATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATaa < 1:1047280/150‑1 (MQ=255) tATGAAACCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAg > 1:2204802/1‑150 (MQ=255) aaaCCCT‑TTTTTTT‑TCAAGGTCTTCTACATCCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCaa < 2:3080125/150‑1 (MQ=255) aaCCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAAc > 2:1746710/1‑150 (MQ=255) aaCCCT‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAAc > 1:2128861/1‑150 (MQ=255) | AATCGCAGGATGAGAGAGAAGATAATGAAACGTTGACGTAAGAAACGCCATCGTTTTCCCGGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCC‑‑TTTTTTT‑TCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCT > CP009273/3958760‑3959055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |