| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,882,377 | C→A | 78.4% | T96T (ACC→ACA) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,882,377 | 0 | C | A | 78.4% | 528.1 / 198.5 | 301 | T96T (ACC→ACA) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (24/41); new base A (130/106); total (154/147) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.15e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
Only 100 of 303 total aligned reads displayed.
ATCGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATC > CP009273/3882231‑3882524 | aTCGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAAtt < 2:3798390/150‑1 (MQ=255) tCGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTc < 1:4484948/150‑1 (MQ=255) cGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTcc > 2:780801/1‑150 (MQ=255) gATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCg > 2:2377092/1‑150 (MQ=255) gATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCg < 1:4544597/150‑1 (MQ=255) aTTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGa > 2:2196310/1‑150 (MQ=255) aCTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCa < 1:2965394/150‑1 (MQ=255) aCTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCa < 2:5158607/150‑1 (MQ=255) gACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCa > 1:3416924/1‑150 (MQ=255) gACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCa < 2:1777858/150‑1 (MQ=255) aCCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAg < 2:2500599/150‑1 (MQ=255) ccGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAgg < 2:3015807/150‑1 (MQ=255) ccGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAgg > 1:3305550/1‑150 (MQ=255) gACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGc < 1:4970797/150‑1 (MQ=255) gACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGc > 2:4971462/1‑150 (MQ=255) aCAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGcc < 1:4029541/150‑1 (MQ=255) aCAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGcc < 1:5055441/150‑1 (MQ=255) aGCGGCACCGGGGCGGTGACGCCGAGCCTGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGGTATCAATACACAATTCCGACTCACCAGGGCCGt > 2:2258085/1‑150 (MQ=255) aGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGt > 1:1279899/1‑150 (MQ=255) aGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGt < 2:4052189/150‑1 (MQ=255) ggCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGgc > 1:4388567/1‑150 (MQ=255) aCCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCa > 2:2019057/1‑150 (MQ=255) aCCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCa > 2:4590153/1‑150 (MQ=255) ccGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCag > 1:3990237/1‑150 (MQ=255) cGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCaga < 1:4751486/150‑1 (MQ=255) ggggCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCagag > 1:5154944/1‑150 (MQ=255) ggggCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCagag > 1:2755238/1‑150 (MQ=255) ggCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCa > 1:2921710/1‑150 (MQ=255) gCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCaa < 1:24223/150‑1 (MQ=255) cGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCaaa > 1:1796438/1‑150 (MQ=255) ggTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAAt < 1:3604215/150‑1 (MQ=255) ggTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAAt > 2:2091514/1‑150 (MQ=255) gTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATc < 1:1089413/150‑1 (MQ=255) cGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCtata > 2:1910724/1‑150 (MQ=255) agagCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTc > 1:684223/1‑150 (MQ=255) cATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGt < 2:1883213/150‑1 (MQ=255) aTGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTa < 1:1617458/150‑1 (MQ=255) cAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTg > 1:1449251/1‑150 (MQ=255) aGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCACATCTATATTCCGGTACTGa > 2:1799471/1‑150 (MQ=255) atgCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAAcgc < 2:2709646/150‑1 (MQ=255) gcggcgACGCAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGc < 2:5040314/150‑1 (MQ=255) cggcgACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCa < 1:2290139/150‑1 (MQ=255) ggcgACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAg > 2:1165005/1‑150 (MQ=255) ggcgACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAg < 1:3240137/150‑1 (MQ=255) gacgaAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGac > 2:4777476/1‑149 (MQ=255) gacgaAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGaa < 1:3202925/150‑1 (MQ=255) acgaAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGaaa > 1:3777584/1‑150 (MQ=255) ccTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGcc > 1:4117048/1‑150 (MQ=255) cTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCt < 1:3389352/150‑1 (MQ=255) tACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTg < 1:1900717/150‑1 (MQ=255) aCAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTgg > 1:1980073/1‑150 (MQ=255) cGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCg > 2:4133429/1‑150 (MQ=255) cGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCg > 2:4195231/1‑150 (MQ=255) ggCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCgc > 2:1385751/1‑150 (MQ=255) cAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCgcag > 1:1008920/1‑150 (MQ=255) cGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCaaa > 1:2642097/1‑150 (MQ=255) cGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCaaa < 2:3343618/150‑1 (MQ=255) aGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAAtg > 1:2320885/1‑150 (MQ=255) ctactaTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCt > 2:353995/1‑132 (MQ=255) ctactaTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCt < 1:353995/132‑1 (MQ=255) ctactaTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGTATCGCAGCAAAAtggt > 2:2969150/1‑150 (MQ=255) ctactaTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAAtggt < 2:2844233/150‑1 (MQ=255) ctactaTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAAtggt > 2:4726975/1‑150 (MQ=255) ctaTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGc < 2:2509397/150‑1 (MQ=255) ctaTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGc < 1:2918556/150‑1 (MQ=255) ctaTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGc > 2:1064270/1‑150 (MQ=255) taTGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCg < 1:3841392/150‑1 (MQ=255) gCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTtc > 1:2093274/1‑150 (MQ=255) gCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTtc > 1:756434/1‑150 (MQ=255) gCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTtc < 1:4232486/150‑1 (MQ=255) cGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTtct > 2:4462760/1‑150 (MQ=255) cGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTtct < 1:4640207/150‑1 (MQ=255) gTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTtctc < 2:4310509/150‑1 (MQ=255) gTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTtctt < 2:1617417/150‑2 (MQ=255) gTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTtctc > 2:2580885/1‑150 (MQ=255) gTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTtctc > 2:3659808/1‑150 (MQ=255) tAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTa < 2:4618651/150‑1 (MQ=255) tAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTa > 2:3922625/1‑150 (MQ=255) ccGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACt > 1:883343/1‑150 (MQ=255) cGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTa > 2:1716436/1‑150 (MQ=255) cGAGTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTa > 1:4862694/1‑150 (MQ=255) gTCAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAttt > 1:2195153/1‑150 (MQ=255) cAGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCt > 2:1519153/1‑150 (MQ=255) aGTGAAAAATATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCtt < 1:4175239/150‑1 (MQ=255) tGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTg > 1:365386/1‑150 (MQ=255) aaaTATCTTTGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAc > 1:1115334/1‑150 (MQ=255) cTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCa < 2:3181413/150‑1 (MQ=255) tGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAggg < 2:330854/150‑1 (MQ=255) tGGTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAggg > 1:1725676/1‑150 (MQ=255) gTTATCAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGcc < 1:4787049/150‑1 (MQ=255) cAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGc > 2:4862110/1‑150 (MQ=255) cAATACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGc > 2:889800/1‑150 (MQ=255) aaTACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGcc < 2:3692303/150‑1 (MQ=255) aaTACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGcc > 1:1240728/1‑150 (MQ=255) aaTACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGcc > 2:2646962/1‑150 (MQ=255) aaTACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGcc > 2:882821/1‑150 (MQ=255) aTACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCa < 1:1334784/150‑1 (MQ=255) aTACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCa < 1:928555/150‑1 (MQ=255) tACACAATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAg > 2:2393619/1‑150 (MQ=255) acCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATc < 2:3232749/150‑1 (MQ=255) | ATCGATTTACTGACCGACAGCGGCACCGGGGCGGTGACGCAGAGCATGCAGGCTGCGATGATGCGCGGCGACGAAGCCTACAGCGGCAGTCGTAGCTACTATGCGTTAGCCGAGTCAGTGAAAAATATCTTTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATC > CP009273/3882231‑3882524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |