| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,899,000 | C→A | 6.5% | intergenic (‑43/+91) | bglF ← / ← bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,899,000 | 0 | C | A | 6.5% | 899.8 / 25.6 | 259 | intergenic (‑43/+91) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon |
| Reads supporting (aligned to +/- strand): ref base C (125/117); new base A (8/9); total (133/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
Only 100 of 263 total aligned reads displayed.
CTTTCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTG > CP009273/3898851‑3899149 | ttCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCt < 2:1194020/150‑1 (MQ=255) ttCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCt < 2:538085/150‑1 (MQ=255) tCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTg < 1:859852/150‑1 (MQ=255) aTCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑aa < 2:773650/150‑1 (MQ=255) tCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑aaa > 2:4738799/1‑150 (MQ=255) ccTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑aaaa > 2:3696133/1‑150 (MQ=255) tttaaAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGc < 1:141816/150‑1 (MQ=255) aaaaCGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAAACTG‑AAAAAAACGGCCTg < 2:639147/150‑1 (MQ=255) aaCGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGAc > 2:3962105/1‑150 (MQ=255) aaCGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTAATAACTGGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGAc < 1:4552982/150‑1 (MQ=255) aaCGTAATCGCGTTGCGAAATGCATCATACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTT‑AAAAAAACGGCCTGAc < 1:4552925/150‑1 (MQ=255) aaCGTAATCGCGGTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGAc < 2:3006951/150‑1 (MQ=255) cGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTG‑AAAAAAACGGCCTGACg > 1:4698406/1‑150 (MQ=255) cGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGt > 2:1003061/1‑150 (MQ=255) cGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAAACTG‑AAAAAAACGGCCTGACGt < 1:1229651/150‑1 (MQ=255) gTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAAACTG‑AAAAAAACGGCCTGACGTg > 2:1486153/1‑150 (MQ=255) tAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGa < 2:2688681/150‑1 (MQ=255) tAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGa > 2:1944348/1‑150 (MQ=255) aaTCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGTCCTGACGTGaa > 1:5088375/1‑150 (MQ=255) aaTCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGaa > 2:1937311/1‑150 (MQ=255) aaTCGCGTTGCGAAAGGCATCAGACTCACAATGTTATCTGCGCCCCCTACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGaa < 1:4905920/150‑1 (MQ=255) cgcgTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCa > 2:1397902/1‑150 (MQ=255) cgcgTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCa > 2:2255159/1‑150 (MQ=255) cgcgTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCa < 2:4791153/150‑1 (MQ=255) cgTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGCCTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACGTGCCCTCTACCGCTTTGCGGCAACACTCCAAAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCaa < 2:1991777/150‑1 (MQ=255) gTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGc < 1:2539428/150‑1 (MQ=255) aaTGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAAttttt < 2:2076970/150‑1 (MQ=255) aTGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAAtttttt > 1:766231/1‑150 (MQ=255) aTGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAAtttttt < 1:4460080/150‑1 (MQ=255) catcatACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCa < 2:310653/150‑1 (MQ=255) cATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCa > 2:4078308/1‑150 (MQ=255) aTCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAg > 2:2031500/1‑150 (MQ=255) aTCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAg < 1:5030745/150‑1 (MQ=255) acaCTCACACTGTTATCTGCGCCCCCGACACCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTATACCGCTTTGCGGCAAAAATCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtt < 1:3482468/148‑1 (MQ=255) aGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtt > 2:4965467/1‑150 (MQ=255) aCTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtttt < 2:3871501/150‑1 (MQ=255) aCTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGtttt < 2:4247928/150‑1 (MQ=255) acaATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGATTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGccc < 1:3596437/150‑1 (MQ=255) aTGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCt < 1:2315465/150‑1 (MQ=255) tGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCtt > 1:3842801/1‑150 (MQ=255) gTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTa < 2:3158937/150‑1 (MQ=255) tATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAAACTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGt > 2:4810580/1‑150 (MQ=255) cTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCg > 1:3117047/1‑150 (MQ=255) tGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCgg < 2:3446898/150‑1 (MQ=255) tGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑‑AAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGt < 1:2409717/150‑1 (MQ=255) cccccGACTCCTGCGAGTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGACTGACGTGAATCAAGCAATTTTTTTCAGGGTTTGCACGCTTAGTGCGGTAAc > 2:2628240/1‑150 (MQ=255) ccccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACa < 2:4317412/150‑1 (MQ=255) cccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACaa > 2:4483424/1‑150 (MQ=255) cccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACaa > 2:1729547/1‑150 (MQ=255) cccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAAACTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACaa > 1:3351113/1‑150 (MQ=255) cGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATc < 1:619233/150‑1 (MQ=255) cGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATc > 2:329468/1‑150 (MQ=255) aCTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTTACGTGAATCAAGCAATTTTTTTCATGTTTTGCCCGCTTAGTGCGGTAACAATCCt > 2:307225/1‑150 (MQ=255) cTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCtt < 2:210821/150‑1 (MQ=255) tCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCttt > 1:2871835/1‑150 (MQ=255) tCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCttt > 2:362586/1‑150 (MQ=255) tCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCttt < 2:4701387/150‑1 (MQ=255) ccTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTa < 2:3803703/150‑1 (MQ=255) cTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAAACTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTAc < 1:5106323/150‑1 (MQ=255) gCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTc < 2:1879227/150‑1 (MQ=255) gACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAg > 2:1452790/1‑150 (MQ=255) aCTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGt < 2:2177450/150‑1 (MQ=255) cTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTGAAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGt > 1:3218080/1‑150 (MQ=255) aTTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGtaat > 1:1662851/1‑150 (MQ=255) tttttCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGtaata > 2:3463089/1‑150 (MQ=255) ttttCTGGCTAACTCCGACATAACTGGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGtaataa < 1:3467691/150‑1 (MQ=255) tttCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTaataat > 1:1829554/1‑150 (MQ=255) gCTAACTCCGTCATAACTGGCCCTCTACCGCTTTGCGGAAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCa < 1:4153872/150‑1 (MQ=255) aaCTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAgtg < 1:3073683/150‑1 (MQ=255) cTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGtt < 1:819805/150‑1 (MQ=255) cagaaCTTGCCATCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTgc < 2:2959369/147‑1 (MQ=255) aTAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTgcg < 2:2904390/150‑1 (MQ=255) aTAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTgcg < 1:2624856/150‑1 (MQ=255) aTAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAAACAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTgcg > 2:2765342/1‑150 (MQ=255) cccTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGct < 1:27583/150‑1 (MQ=255) ccTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGctc > 1:4883660/1‑150 (MQ=255) ctctACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGctct > 1:3665315/1‑150 (MQ=255) ctctACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGctct > 1:1085116/1‑150 (MQ=255) tctACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCta > 1:4933948/1‑150 (MQ=255) ctACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCtat < 1:3724892/150‑1 (MQ=255) ccGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATAtt < 2:2552215/150‑1 (MQ=255) ccGCTTTGCGGAAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATAtt < 1:1901800/150‑1 (MQ=255) cGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATAttt < 1:4078308/150‑1 (MQ=255) gCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTa > 1:2084584/1‑150 (MQ=255) ttGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATgg > 2:4437591/1‑150 (MQ=255) gCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCt > 2:4127353/1‑150 (MQ=255) gCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAACCAAATTTTTTCAGGTTATGCCCGCATAGTGAGGTAACAATCCTTAACACAGTAATAAAATATCAGTGTAATTAGCGCACGCGCTCTATAATTATGGCTaaa > 1:672870/1‑150 (MQ=255) aCTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACAt > 1:1186145/1‑150 (MQ=255) aCTCC‑AAAAAAAAAACTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACAt < 1:17806/150‑1 (MQ=255) c‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAAtc < 2:766231/150‑1 (MQ=255) aaaaaaaaCCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAAtctc < 1:1944348/150‑1 (MQ=255) aaaaaaCCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTg < 1:4965467/150‑1 (MQ=255) aaaaaaACTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTg < 2:5086561/150‑1 (MQ=255) aaaaaCCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCGGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGc > 1:2483056/1‑150 (MQ=255) aaaaaCCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAATCATAATCTCTGc > 2:5162582/1‑150 (MQ=255) aaaCCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCgg > 2:1518842/1‑150 (MQ=255) aaaCCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCgg > 2:942933/1‑150 (MQ=255) aaCCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCggg > 1:2057505/1‑150 (MQ=255) aCCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGt > 2:3339151/1‑150 (MQ=255) aCCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGt < 1:4197796/150‑1 (MQ=255) | CTTTCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑AAAAAAAAACCTG‑AAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTG > CP009273/3898851‑3899149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |