Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 816,302 | G→T | 100% | R18S (AGG→AGT) | ybhM → | UPF0005 family inner membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 816,302 | 0 | G | T | 98.4% | 655.2 / 0.6 | 207 | R18S (AGG→AGT) | ybhM | UPF0005 family inner membrane protein |
Reads supporting (aligned to +/- strand): ref base G (3/1); new base T (121/82); total (124/83) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.51e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 207 total aligned reads displayed.
TTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGGATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGTTATTATTACTTTGTA > CP009273/816155‑816447 | tttCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTat < 2:1682467/150‑1 (MQ=255) tCTTTATCCATAAATGCAAAAGTATTTTGTATGCTTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTatat < 2:4398672/150‑1 (MQ=255) cTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATAtt < 2:3380494/150‑1 (MQ=255) gTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTaa > 2:1744883/1‑150 (MQ=255) gTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTaa < 1:270949/150‑1 (MQ=255) tATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTaaa < 1:65682/150‑1 (MQ=255) ccATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACgg > 1:3102451/1‑150 (MQ=255) cATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGt > 1:625337/1‑150 (MQ=255) aTAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGta > 1:1487678/1‑150 (MQ=255) aaaTGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGtata < 1:1283802/150‑1 (MQ=255) aaaTGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGtata > 1:562026/1‑150 (MQ=255) aaaTGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGtata > 2:4127753/1‑150 (MQ=255) gCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGc > 1:77419/1‑150 (MQ=255) gCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGc > 2:2252266/1‑150 (MQ=255) aaaaGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTc < 1:2189088/150‑1 (MQ=255) aaGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCAt > 2:112940/1‑150 (MQ=255) aGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCAtt < 2:1977180/150‑1 (MQ=255) aTTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTAcc < 1:1730147/150‑1 (MQ=255) aTTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTAcc > 2:2621680/1‑150 (MQ=255) tGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCtt > 1:4456541/1‑150 (MQ=255) aTGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAg > 1:1510179/1‑150 (MQ=255) tGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAgg > 1:2428063/1‑150 (MQ=255) cGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGtt > 1:3616087/1‑150 (MQ=255) cGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGtt > 2:842016/1‑150 (MQ=255) cGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGtt < 2:2276038/150‑1 (MQ=255) cGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGtt < 1:1111244/150‑1 (MQ=255) gTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGttt > 1:2982531/1‑150 (MQ=255) gTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTtggt < 2:5042382/150‑1 (MQ=255) ttttAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGTATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTATATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTgtggtg > 2:4183127/1‑150 (MQ=255) ttttAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTtggtg < 1:1185320/150‑1 (MQ=255) ttttAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTtggtg < 1:133341/150‑1 (MQ=255) aaTTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAAc > 2:3165932/1‑150 (MQ=255) gATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGAc < 2:4764270/150‑1 (MQ=255) aTGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACt < 2:2253004/150‑1 (MQ=255) aTGGTGAATATTAATATTTTGTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACt < 1:3963815/150‑1 (MQ=255) tGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTa < 1:4073181/150‑1 (MQ=255) ggTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAg < 2:2133823/150‑1 (MQ=255) gAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCt > 1:4155964/1‑150 (MQ=255) gAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTGAGGTTTGGTGGCAACCGCAGGACTAGCCt > 2:2383839/1‑150 (MQ=255) ttaatattTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGa < 2:625337/150‑1 (MQ=255) atattTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCt > 1:1264637/1‑150 (MQ=255) tattTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTa < 1:3351800/150‑1 (MQ=255) attTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTaa < 1:1571231/150‑1 (MQ=255) ttttttCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTCAg > 2:182772/1‑150 (MQ=255) ttttttCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAg < 1:4241703/150‑1 (MQ=255) tttCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGtat > 1:4787652/1‑150 (MQ=255) cTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCCGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATc > 2:3705820/1‑150 (MQ=255) cTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATc > 2:4201056/1‑150 (MQ=255) tAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCg > 1:1774356/1‑150 (MQ=255) tAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCg > 2:1005480/1‑150 (MQ=255) tAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTAAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCg > 2:3972813/1‑150 (MQ=255) aGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATCTCGaa > 2:2856595/1‑150 (MQ=255) ggATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGaaa > 2:4706438/1‑150 (MQ=255) aTAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAAtt < 1:953300/150‑1 (MQ=255) cTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACgg > 1:2518222/1‑150 (MQ=255) cTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACgg < 2:4971381/150‑1 (MQ=255) aaaaGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCa < 2:1547905/150‑1 (MQ=255) aaGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAAc < 1:2097648/150‑1 (MQ=255) aGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAAcc < 1:4559113/150‑1 (MQ=255) gAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCa > 2:3477862/1‑150 (MQ=255) gAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCa > 2:4538425/1‑150 (MQ=255) tGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAat > 1:1330319/1‑150 (MQ=255) ggAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAata > 1:4383251/1‑150 (MQ=255) gAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAatat < 2:2242176/150‑1 (MQ=255) aaTCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATg > 1:3401593/1‑150 (MQ=255) tCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGAt > 2:4518960/1‑150 (MQ=255) cATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGAtt < 1:431587/150‑1 (MQ=255) aTACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTc > 2:3925113/1‑150 (MQ=255) tACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTca > 2:1974374/1‑150 (MQ=255) aCTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTcac > 1:3178941/1‑150 (MQ=255) aCTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGGTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTcac > 1:3415309/1‑150 (MQ=255) cTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTcacc > 2:2049288/1‑150 (MQ=255) cGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTcaccac > 2:131633/1‑150 (MQ=255) cGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTcaccac > 2:159068/1‑150 (MQ=255) cGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTcaccac > 2:3876157/1‑150 (MQ=255) gCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCaccacc > 2:3433934/1‑150 (MQ=255) cAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCAccacca > 2:1753819/1‑150 (MQ=255) aaaaCAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCaa > 1:4040936/1‑150 (MQ=255) aaaCAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAat < 2:2220938/150‑1 (MQ=255) aaaCAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAat > 2:5126418/1‑150 (MQ=255) aaCAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAatg < 2:2718100/150‑1 (MQ=255) aCAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAatgt < 1:5100626/150‑1 (MQ=255) cAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAatgta > 2:3208437/1‑150 (MQ=255) cAGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAatgta > 2:4344929/1‑150 (MQ=255) aGCAATAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAatgtat > 1:287059/1‑150 (MQ=255) aaTAAATTAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTc > 1:438039/1‑150 (MQ=255) ttAGATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATa < 2:408163/150‑1 (MQ=255) gATTTTCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAggg < 2:364919/150‑1 (MQ=255) tttCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGtta > 1:3226318/1‑150 (MQ=255) tttCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGtta > 1:4881943/1‑150 (MQ=255) tttCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAAACAAATATGATTCACCACCAATGTATGTCGCCATAGGGtta < 2:3321529/150‑1 (MQ=255) tCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGttatt > 2:145783/1‑150 (MQ=255) tCAGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTAGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGttatt < 1:2252287/150‑1 (MQ=255) aGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACTACCAATGTATGTCGCCATAGGGttattat > 1:804514/1‑150 (MQ=255) aGCACGAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGttattat < 1:2621680/150‑1 (MQ=255) gAGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGTTATTATTACtt > 1:3989265/1‑150 (MQ=255) aGGCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGTTATTATTACttt > 1:3703227/1‑150 (MQ=255) aGGCCAGGATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGTTATTATTACttt > 2:3809443/1‑150 (MQ=255) ggCCAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGTTATTATTACTTtg < 1:1005480/150‑1 (MQ=255) ccAGTATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCACCCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATCTGCTGCACCACCAATGTATGTCGCCATAGGGTGATTAGTACTgtgtt > 2:4388978/1‑149 (MQ=255) | TTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCAGGATATTAAACGGTATATGGCTCATTACCGCTTTAGGTTTGGTGGCAACCGCAGGACTAGCCTGGGGAGCTAAGTATATCGAAATTACGGCAACCAAATATGATTCACCACCAATGTATGTCGCCATAGGGTTATTATTACTTTGTA > CP009273/816155‑816447 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |