| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,364,366 | G→A | 80.5% | intergenic (+106/‑107) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,364,366 | 0 | G | A | 80.5% | 605.9 / 135.6 | 274 | intergenic (+106/‑107) | pspE/ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| Reads supporting (aligned to +/- strand): ref base G (30/22); new base A (101/116); total (132/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 276 total aligned reads displayed.
CGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAATCTACG > CP009273/1364218‑1364512 | tGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTGAGTCACACCTTATTTAAATACCCAGACATTATTTTCGTCAGCTCAAAAAAACGCTTTTTACCTAGGaaaaaaa > 1:3661351/1‑149 (MQ=255) gAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTGTGTCACACCGTATTTAAATCCCCCTAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTCAAAAATg > 1:3728207/1‑150 (MQ=255) aGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGAtt < 1:4732876/150‑1 (MQ=255) aCATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTACCTAGTAAAAAATGATTTc > 1:864812/1‑150 (MQ=255) cATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTcc < 2:1986783/150‑1 (MQ=255) cATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTATGTCACACCGTATTTACATCCCCAAAGATTATTTGCGGCAGCTCCCAAATACGCTTTTTACCGAGTTAAAAATGATTTcc > 1:955114/1‑150 (MQ=255) aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCt < 1:2737214/150‑1 (MQ=255) aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTAAATACCCATAGATTATTTGCGTCAGCTCACAAATAAGCTTTTTCCCGGGTTAAAAATGATTTCCt > 1:2552870/1‑150 (MQ=255) cGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTGTGTGACACCTTATTTACATACCCATAGATTATTTGCGTCAGCGCACAAATAAGCTTTTTACCTAGTAAAAAATTATTTACTGc > 1:233907/1‑150 (MQ=255) cAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGt < 1:4210036/150‑1 (MQ=255) tGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTATGTCACACCATATTTAAATCCCCAAATATTATTTTCGTAAGCACACAAAAAAGCATTTTACCAAGTAAAAAATTATTTCCAGCGTgtc > 1:99874/1‑148 (MQ=255) tGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTGATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCGAGTAAAAAATGATTTCATGCGTGAc > 2:55303/1‑150 (MQ=255) gCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACt < 2:2254473/150‑1 (MQ=255) gCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTATGTCACACCGTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACt > 2:4464445/1‑150 (MQ=255) gTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATAAGCTTTTTCCCTAGTAAAAAATGATTTACTGGGTGACTAAAAccc > 1:2855612/1‑150 (MQ=255) gTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACAAACCCAAAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAAccc > 1:4691334/1‑150 (MQ=255) gTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTAAATACCCCTATTTTATTTGCCTCAGCTCACAAATAAGCTTTTTCCCTGGTAAAAAATTATTTACAGCGGGTCTAAAAacc > 2:221704/1‑150 (MQ=255) cAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGTTTTTTTTTTTCTGTCAAACCTTATTTAAATACCCAAATATTATTTGCGTCCGCTCACAAATAAGCATTTTCCCGAGTAAAAAATGATTTACTGCGTGTCTaaaaaac > 1:5059050/1‑147 (MQ=255) cAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCtt < 2:273505/150‑1 (MQ=255) cAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCtt < 2:3133237/150‑1 (MQ=255) cAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCtt < 2:309463/150‑1 (MQ=255) aaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTtgt < 1:5150006/150‑1 (MQ=255) aaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTtgt < 2:83616/150‑1 (MQ=255) aaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTAAAACCTTATTTACATCCCCATAGATTATTTTCGTCAGCTCACAAAAACGCTTTATCCCAAGTAAAAAATTATTTCCTGCGTGTCGAAAAACCAtgt > 1:2917870/1‑150 (MQ=255) aaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTATGTAACACCATATTTAAAACCCCAAATATTATTTTCGTCACCACACAAAAAACCTTTTTACCAAGTAAAAAAATAATTACGGCGTGACTAAAAACCAtgt > 1:1776069/1‑150 (MQ=255) ggTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTATGTCACACCGTATTTACAAACCCAAATAATAATTTCGTCAGCAAACAAAAACCCTTTTTCCCAAGTAAAAAAAGAATTAATGCCTGACAAAAAaccaatttc > 1:1957553/1‑144 (MQ=255) ttAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTATTAAAAAATGATTTCCTGCGTGACTAAAAACCTTGTGCTc > 2:3846474/1‑150 (MQ=255) ttAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTATGTCACACCTTATTTACATCCCCAAAGATTATTTGCGTCAGCTCACAAATAAGCTTTTTACCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTc > 2:1440142/1‑150 (MQ=255) tAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCa < 1:2775205/150‑1 (MQ=255) tAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCa > 2:4204646/1‑150 (MQ=255) aaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAAt < 2:4581805/150‑1 (MQ=255) aGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTATTTCACACCATATTTACAAACCCAAATAATATTTGCGTCAGCACACAAAAAAGCTTTTTAACAAGTAAAAAAAGATTTACAGCGTGTCTAAAAACCATGTGGTCAAttt > 1:1854200/1‑149 (MQ=255) aCCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATACCCATATATTATTTGCGTCAGCTCACAAATACGCTTTTTACCTGGTAAAAAATGATTTACTGCGGGACTAAAACCCTTGTGCGCAAATGACAGttt > 2:3462862/1‑150 (MQ=255) cATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAt < 2:1152344/150‑1 (MQ=255) tGAGCGGCGCTTATGCGCCGT‑TTTTTTTTTATGTCACACCTTATTTAAATCCCCAAATATTATTTTCGTCAGCTCACAAATAACCTTTTTACCAATTAAAAAAATATTTACTGCGTGACTAAAAACCCTGTTCTCAATTGAAACTTTAtt > 2:3661003/1‑150 (MQ=255) ggcgCTTATGCGCCG‑‑TTTTTTTTTATTTAAAACCATATTTACAAACCCAAAGATTATTTTCGTCAGCTAACAAAAAACCTTTTTACCAATTAAAAAAATATTTAATGAGTGACTAAAAAACATTTTGTAAATTTACAGTTTAttttattc > 1:4858359/1‑146 (MQ=255) cgcTTATGCGCCGT‑TTTTTTTTTATTTCACACCTTATTTACAACCCCAAATATTATTTTCGTCAGCTCACAAAAAAGCATTTTAACAAGTAAAAAATTAATTACTGCGTGACTAAAACCCTTTTGCTCAAATTACAGTTTAttttaatcg > 1:786271/1‑145 (MQ=255) gcTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGa < 1:4994171/150‑1 (MQ=255) tATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGGAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCCATTGGCAGTTTTTTTTCTGCGGagta > 2:2922115/1‑150 (MQ=255) tATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGagta < 2:3615004/150‑1 (MQ=255) tATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTGTCCCTAGTAAAAAATGATCTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGagta < 2:679967/150‑1 (MQ=255) aTGCGCCG‑‑TTTTTTTTTCTTTCAAACCTTATTTACATCCCCATAGATTATTTTCGTCAGCTCACAAATAAGCTTTTTACCAAGTAAAAAATTATTTCCTGCGTGACTAAAAACCATGTGCTCAATTGACAGTTTATTTTATGCGGagtag > 2:2401131/1‑150 (MQ=255) cgcCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGtct < 2:1875025/150‑1 (MQ=255) cgcCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACAAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTATtct > 2:1862764/1‑150 (MQ=255) cG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGtctctc < 1:4296774/150‑1 (MQ=255) tttttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTTGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGttt < 1:1301150/150‑1 (MQ=255) tttttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGttt < 1:2122803/150‑1 (MQ=255) tttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCa < 1:2719262/150‑1 (MQ=255) tttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCa < 1:564966/150‑1 (MQ=255) ttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCTCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCAt < 1:1929752/150‑1 (MQ=255) ttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCAt > 2:3631212/1‑150 (MQ=255) ttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCAt > 2:3631268/1‑150 (MQ=255) ttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATgg > 2:4341407/1‑150 (MQ=255) ttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATgg < 2:1609722/150‑1 (MQ=255) cTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGa < 1:4535167/150‑1 (MQ=255) cTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGa < 1:4104261/150‑1 (MQ=255) tGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGAc < 2:5150582/150‑1 (MQ=255) tGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGAc > 1:4893691/1‑150 (MQ=255) gTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGAcc > 2:1737546/1‑150 (MQ=255) gTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGAcc < 2:1679902/150‑1 (MQ=255) gTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGAcc < 2:3957209/150‑1 (MQ=255) gTCACACCTTATTTACATCCACATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCAATGGTAAAAAATGATTTCCTGCGTGAATAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGAcc < 1:2472999/150‑1 (MQ=255) ccTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTAcc > 2:781457/1‑150 (MQ=255) ttACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGaa < 2:3580855/150‑1 (MQ=255) tACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGaaa > 1:1347597/1‑150 (MQ=255) aCATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGTAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAg > 1:261106/1‑150 (MQ=255) aCATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAg < 2:4624997/150‑1 (MQ=255) aCATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAg > 2:2524576/1‑150 (MQ=255) cATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAgg > 2:3625177/1‑150 (MQ=255) ccccATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCaa < 2:302550/150‑1 (MQ=255) ccccATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCaa < 2:3185958/150‑1 (MQ=255) ccccATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCaa < 1:4900301/150‑1 (MQ=255) ccATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACa < 1:4010880/150‑1 (MQ=255) aGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGaa > 1:6158/1‑150 (MQ=255) aGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGaa > 1:4672640/1‑150 (MQ=255) aGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGaa < 1:1455159/150‑1 (MQ=255) attattTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAAc > 2:931055/1‑150 (MQ=255) ttattaGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACa > 1:3803581/1‑150 (MQ=255) ttattTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACa > 1:2089624/1‑150 (MQ=255) attTGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGa > 1:1706773/1‑150 (MQ=255) tGCGTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGaaaa < 1:3923182/150‑1 (MQ=255) gTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTa > 1:4235808/1‑150 (MQ=255) gTCAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTa > 1:3380407/1‑150 (MQ=255) tCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTAc > 2:2825742/1‑150 (MQ=255) cAGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTAct < 1:4450271/150‑2 (MQ=255) aGCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACgg < 1:3661003/150‑1 (MQ=255) gCTCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAAAATGAAACAGAAAATTACGGa > 1:3295385/1‑150 (MQ=255) tCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGAtt < 2:2450877/150‑1 (MQ=255) tCACAAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGAtt > 1:3176974/1‑150 (MQ=255) cacaAATACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTa > 2:3361321/1‑150 (MQ=255) caAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGACAGGCAACATGAAACAGAAAATTACGGATTAcc > 2:436256/1‑150 (MQ=255) aaTACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTg > 2:2756499/1‑150 (MQ=255) aTACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTgg > 2:1839060/1‑150 (MQ=255) tACTCTTTTTCCCTGTTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTATCTCTTTTCATGTGACCGCTACCACGGACAGGCAACATGAAACAGAAAATTACGGATTACCTTGa < 1:1130243/150‑1 (MQ=255) tACGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGa < 2:2607085/150‑1 (MQ=255) aCGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGAc < 2:3728207/150‑1 (MQ=255) aCGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGAc < 1:3104508/150‑1 (MQ=255) aCGCTTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGAc < 1:2951680/150‑1 (MQ=255) cccTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAATCTAc < 2:675400/150‑1 (MQ=255) ccTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAATCTACg > 2:2063533/1‑150 (MQ=255) | CGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAATCTACG > CP009273/1364218‑1364512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |