Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,461,872 G→T 80.5% pseudogene (2224/2513 nt) ydbA → pseudogene, autotransporter homolog; interrupted by IS2 and IS30

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,461,8720GT80.5% 516.9 / 150.1 269pseudogene (2224/2513 nt)ydbApseudogene, autotransporter homolog; interrupted by IS2 and IS30
Reads supporting (aligned to +/- strand):  ref base G (24/29);  new base T (110/106);  total (134/135)
Fisher's exact test for biased strand distribution p-value = 5.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 269 total aligned reads displayed.

TCCGTGGGTATCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCT  >  CP009273/1461725‑1462017
                                                                                                                                                   |                                                                                                                                                 
tccGTGGGTATCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTAt                                                                                                                                                 <  1:5031077/150‑1 (MQ=255)
tccGTGGGTATCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTAt                                                                                                                                                 <  1:3723509/150‑1 (MQ=255)
tccGTGGGTATCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTAt                                                                                                                                                 <  1:2295485/150‑1 (MQ=255)
 ccGTGGGTATCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATg                                                                                                                                                >  2:881486/1‑150 (MQ=255)
 ccGTGGGTATCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATg                                                                                                                                                <  1:3243141/150‑1 (MQ=255)
   gTGGGTATAAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGc                                                                                                                                              >  2:791479/1‑150 (MQ=255)
       gTATCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATa                                                                                                                                          >  2:1227821/1‑150 (MQ=255)
        tATCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATAc                                                                                                                                         >  2:2062361/1‑150 (MQ=255)
         aTCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATAcc                                                                                                                                        <  2:2600909/150‑1 (MQ=255)
         aTCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATAcc                                                                                                                                        >  1:3906026/1‑150 (MQ=255)
            aaCGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGGGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGtt                                                                                                                                     >  2:4180984/1‑150 (MQ=255)
            aaCGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGtt                                                                                                                                     <  1:1436568/150‑1 (MQ=255)
             aCGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTa                                                                                                                                    <  1:1747464/150‑1 (MQ=255)
             aCGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTa                                                                                                                                    <  2:4388764/150‑1 (MQ=255)
                 ttACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAatat                                                                                                                                <  2:1744885/150‑1 (MQ=255)
                  tACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATg                                                                                                                               >  1:267954/1‑150 (MQ=255)
                   aCGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGa                                                                                                                              >  1:4056596/1‑150 (MQ=255)
                      gCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAAtg                                                                                                                           <  1:557970/150‑1 (MQ=255)
                          tGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAAtggtgg                                                                                                                       >  1:1778239/1‑150 (MQ=255)
                          tGATAAAAACGTGACGCAGGAAGGAAAGTAAAATGTTGTATCAGACAGTGAGGTTACTACTCGTCAGAGTAATTTATTTTATGTAAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGACGATTGCAATACCCTTAAAATGAAtggttt                                                                                                                       >  2:4930526/1‑148 (MQ=255)
                                taaCGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGa                                                                                                                 <  1:3058744/150‑1 (MQ=255)
                                  aCGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAAc                                                                                                               <  1:3690826/150‑1 (MQ=255)
                                   cGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACt                                                                                                              >  1:4872193/1‑150 (MQ=255)
                                     tGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGa                                                                                                            >  2:1301935/1‑150 (MQ=255)
                                     tGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGa                                                                                                            >  1:2873918/1‑150 (MQ=255)
                                     tGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGa                                                                                                            <  1:3104862/150‑1 (MQ=255)
                                            ggatggaAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGgaga                                                                                                     >  1:3639207/1‑150 (MQ=255)
                                            ggatggaAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGgaga                                                                                                     <  2:2480645/150‑1 (MQ=255)
                                            ggatggaAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGgaga                                                                                                     >  2:2396245/1‑150 (MQ=255)
                                             gatggaAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGgagag                                                                                                    >  2:1305879/1‑150 (MQ=255)
                                             gatggaAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGgagag                                                                                                    <  1:1973448/150‑1 (MQ=255)
                                              atggaAAGTTAACTGTTGTATCAGACAGTGTGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGgagaga                                                                                                   <  2:384519/150‑1 (MQ=255)
                                              atggaAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGgagaga                                                                                                   >  1:18084/1‑150 (MQ=255)
                                              atggaAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGgagaga                                                                                                   >  1:1165159/1‑150 (MQ=255)
                                                  aaaGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGaaaaa                                                                                               <  1:4225751/150‑1 (MQ=255)
                                                  aaaGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGaaaaa                                                                                               >  1:3601224/1‑150 (MQ=255)
                                                   aaGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAAc                                                                                              <  2:2735108/150‑1 (MQ=255)
                                                   aaGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAAc                                                                                              >  2:1946751/1‑150 (MQ=255)
                                                    aGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAAcg                                                                                             >  2:4023528/1‑150 (MQ=255)
                                                        aaCTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCt                                                                                         >  2:3715203/1‑150 (MQ=255)
                                                          cTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAGAACGCGCTTg                                                                                       <  2:3981216/150‑1 (MQ=255)
                                                            gttgtATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCa                                                                                     <  2:3785076/150‑1 (MQ=255)
                                                             ttgtATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAg                                                                                    <  1:5159592/150‑1 (MQ=255)
                                                             ttgtATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAg                                                                                    <  2:3755613/150‑1 (MQ=255)
                                                               gtATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGAt                                                                                  <  2:212748/150‑1 (MQ=255)
                                                                tATCAGACAGTGAGGTAACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATg                                                                                 <  1:2586095/150‑1 (MQ=255)
                                                                 aTCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATgg                                                                                <  1:2333594/150‑1 (MQ=255)
                                                                  tCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATggg                                                                               <  2:4060065/150‑1 (MQ=255)
                                                                   cAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGt                                                                              >  1:4071089/1‑150 (MQ=255)
                                                                        aGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAg                                                                         <  1:2729871/150‑1 (MQ=255)
                                                                          tGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGt                                                                       <  1:1012204/150‑1 (MQ=255)
                                                                          tGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGt                                                                       >  2:167455/1‑150 (MQ=255)
                                                                            aGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTa                                                                     >  1:3463936/1‑150 (MQ=255)
                                                                            aGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTa                                                                     <  2:4956749/150‑1 (MQ=255)
                                                                            aGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTa                                                                     <  1:3235310/150‑1 (MQ=255)
                                                                             ggTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTAc                                                                    <  2:1633217/150‑1 (MQ=255)
                                                                              gTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACt                                                                   <  1:4680821/150‑1 (MQ=255)
                                                                                 aCTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTcc                                                                <  2:4054510/150‑1 (MQ=255)
                                                                                 aCTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTcc                                                                >  1:4717743/1‑150 (MQ=255)
                                                                                       cGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTgcgc                                                          >  2:1179159/1‑150 (MQ=255)
                                                                                       cGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTgcgc                                                          >  2:1274515/1‑150 (MQ=255)
                                                                                       cGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTgcgc                                                          >  1:3196163/1‑150 (MQ=255)
                                                                                          cAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGcaca                                                       <  1:83429/150‑1 (MQ=255)
                                                                                          cAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGcaca                                                       >  1:4863528/1‑150 (MQ=255)
                                                                                           agagTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAg                                                      >  1:2434756/1‑150 (MQ=255)
                                                                                           agagTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAg                                                      <  2:2262067/150‑1 (MQ=255)
                                                                                               tAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGTTATGGTTGTGTTTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGata                                                  <  1:4234994/150‑1 (MQ=255)
                                                                                               tAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGata                                                  <  2:3179864/150‑1 (MQ=255)
                                                                                               tAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGata                                                  <  2:4404401/150‑1 (MQ=255)
                                                                                                    tatttGATGGCAGCGCAGAGTAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGtt                                             <  1:786631/150‑1 (MQ=255)
                                                                                                    tatttGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGtt                                             <  2:4986632/150‑1 (MQ=255)
                                                                                                        tGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATAc                                         >  1:4421246/1‑150 (MQ=255)
                                                                                                          aTGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCa                                       >  2:2959078/1‑150 (MQ=255)
                                                                                                               aGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGtt                                  >  1:906567/1‑150 (MQ=255)
                                                                                                               aGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGtt                                  >  1:2753375/1‑150 (MQ=255)
                                                                                                               aGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGtt                                  >  2:561635/1‑150 (MQ=255)
                                                                                                               aGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGtt                                  >  1:4273053/1‑150 (MQ=255)
                                                                                                                gcgcAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTa                                 <  2:2568299/150‑1 (MQ=255)
                                                                                                                 cgcAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTAt                                <  2:3664051/150‑1 (MQ=255)
                                                                                                                 cgcAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTAt                                >  2:3221676/1‑150 (MQ=255)
                                                                                                                 cgcAGAGAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTAt                                >  1:4809920/1‑150 (MQ=255)
                                                                                                                  gcAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTAtt                               >  2:3383612/1‑150 (MQ=255)
                                                                                                                    agagAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGt                             >  1:618566/1‑150 (MQ=255)
                                                                                                                    agagAAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGt                             >  2:424550/1‑150 (MQ=255)
                                                                                                                       gaAAACGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGt                          >  1:2053827/1‑150 (MQ=255)
                                                                                                                        aaaaCGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGtt                         >  2:954854/1‑150 (MQ=255)
                                                                                                                        aaaaCGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGtt                         <  2:1761628/150‑1 (MQ=255)
                                                                                                                        aaaaCGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGtt                         <  1:2396274/150‑1 (MQ=255)
                                                                                                                           aCGTCAGGTCTGGTTGTTATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAgt                      >  2:4548728/1‑150 (MQ=255)
                                                                                                                           aCGTCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAgt                      >  2:4644230/1‑150 (MQ=255)
                                                                                                                              tCAGGTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAgtggt                   <  2:4056985/150‑1 (MQ=255)
                                                                                                                                 ggTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAg                >  1:954493/1‑150 (MQ=255)
                                                                                                                                 ggTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAg                <  1:4610659/150‑1 (MQ=255)
                                                                                                                                 ggTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAg                >  1:1572235/1‑150 (MQ=255)
                                                                                                                                  gTCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAgt               <  2:3246259/150‑1 (MQ=255)
                                                                                                                                   tCTGGTTGTGATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAgtc              <  2:4621899/150‑1 (MQ=255)
                                                                                                                                       gTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGtcgtcg          <  1:165637/150‑1 (MQ=255)
                                                                                                                                            gATTGGCTATGGCAATACCGTTAATCTGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGtata     <  2:736900/150‑1 (MQ=255)
                                                                                                                                            gATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGtata     >  2:2017603/1‑150 (MQ=255)
                                                                                                                                            gATTGGCTATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGtata     >  1:4363320/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
TCCGTGGGTATCAACGTTTACGGCAGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGAGTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAATATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCT  >  CP009273/1461725‑1462017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: