| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,275,210 | A→G | 100% | intergenic (+226/‑125) | agaA → / → agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,275,210 | 0 | A | G | 98.0% | 1132.2 / 4.8 | 303 | intergenic (+226/‑125) | agaA/agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
| Reads supporting (aligned to +/- strand): ref base A (3/3); new base G (151/144); total (154/149) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 303 total aligned reads displayed.
CGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTG > CP009273/3275063‑3275356 | ggATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTg < 2:3711753/150‑1 (MQ=255) ggATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTGTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTg > 2:3123895/1‑150 (MQ=255) tGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAAc > 1:1815494/1‑150 (MQ=255) gACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACttt < 1:114557/150‑1 (MQ=255) cTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGt < 1:4226666/150‑1 (MQ=255) aaCGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGttt > 2:4918737/1‑150 (MQ=255) aCGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttc > 1:4096702/1‑150 (MQ=255) cgcgTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttc‑t < 2:890237/150‑1 (MQ=255) cgcgTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttc‑t > 1:2964934/1‑150 (MQ=255) gcgTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttc‑tt > 1:3297100/1‑150 (MQ=255) gTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttc‑tttt < 2:4044280/150‑1 (MQ=255) cTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGtttc‑ttttct < 2:3664264/150‑1 (MQ=255) aTCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCtata > 2:739967/1‑150 (MQ=255) aTCAGACATACAGTTGGTGACCGCAAGGCCGGATAACGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCtata < 1:2682980/150‑1 (MQ=255) gACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGAtt < 1:1601550/150‑1 (MQ=255) gACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATCTCTTTTTTCTCCGTTGAACTTTCAGTTTCTTTTTCTATAGAt < 1:1272704/150‑1 (MQ=255) gACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTACTTTATATTTTCTTTCAACTATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGAtt < 1:2655791/150‑1 (MQ=255) aCCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGAttt < 1:3219723/150‑1 (MQ=255) tACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTaa < 2:2782777/150‑1 (MQ=255) tACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTaa > 1:4495739/1‑150 (MQ=255) ttGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCATTTATATTTTCTTTCAACGATCAAAAATTTCGTTTTATTTCTTTTTTATCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAAc < 1:1482352/150‑1 (MQ=255) gTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGaa < 1:1414762/150‑1 (MQ=255) tGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGaaa > 2:3038509/1‑150 (MQ=255) tGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGaaa > 1:4785031/1‑150 (MQ=255) gACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAg < 2:4980595/150‑1 (MQ=255) aCCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGa < 2:2725701/150‑1 (MQ=255) ccGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCATTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGAc < 2:4890597/150‑1 (MQ=255) cGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACa < 1:4659175/150‑1 (MQ=255) cAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATc > 2:1166649/1‑150 (MQ=255) aaGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCa > 2:5017501/1‑150 (MQ=255) ggCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCAcc > 1:1524687/1‑150 (MQ=255) gCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCa > 1:4906923/1‑150 (MQ=255) ccGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCaa > 2:2978336/1‑150 (MQ=255) ccGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCaa > 2:3990240/1‑150 (MQ=255) ccGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCaa > 2:1436636/1‑150 (MQ=255) cGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAg < 1:3636534/150‑1 (MQ=255) gATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtg < 1:3487760/150‑1 (MQ=255) tAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtgaa > 2:2468775/1‑150 (MQ=255) aaaGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtgaaa > 2:3599578/1‑150 (MQ=255) aGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtgaaatg < 1:1036341/150‑1 (MQ=255) cGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtgaaatgaa < 1:522369/150‑1 (MQ=255) gTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtgaaatgaaa < 2:3493644/150‑1 (MQ=255) ttGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAg < 2:780765/138‑1 (MQ=255) ttGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAg > 1:780783/1‑138 (MQ=255) ttGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACg > 2:1897222/1‑150 (MQ=255) ttGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACg < 1:2786866/150‑1 (MQ=255) tGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGa > 1:2211094/1‑150 (MQ=255) gcgcCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGaa < 2:2000533/150‑1 (MQ=255) cgccgcATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGaaa < 2:1558012/150‑1 (MQ=255) gccgcATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAg < 2:4861435/150‑1 (MQ=255) ccgcATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAgg < 2:1529398/150‑1 (MQ=255) cgcATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGc > 1:2476583/1‑150 (MQ=255) gcATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCa < 1:2582390/150‑1 (MQ=255) cATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCaa < 2:2296797/150‑1 (MQ=255) tCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGt < 2:3066250/150‑1 (MQ=255) tCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGt > 1:1159730/1‑150 (MQ=255) ccAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTg > 2:1016961/1‑150 (MQ=255) gCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGaaa < 1:2647892/150‑1 (MQ=255) aaTCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGc < 2:3297100/150‑1 (MQ=255) aaTCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAATTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGc > 2:3527795/1‑150 (MQ=255) aTCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCg < 2:2695442/150‑1 (MQ=255) aTCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCg > 1:1855674/1‑150 (MQ=255) tCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGa > 1:710313/1‑150 (MQ=255) cccTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGAc < 2:1815494/150‑1 (MQ=255) ccTTTTGCTTCCTTTATCTTTTCTTTTAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACa < 2:41455/150‑1 (MQ=255) ttttCTTCATTTTTCTTTTCTTTAAACGATAACAAATTTCTTTTTATTTCTTTTTTCTCCGTTGAAATTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATAACCAAGTTAAATGAAACGAAAGGCAAGTTAAAGCGACAACg < 1:2902136/150‑1 (MQ=255) cTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCg > 2:4137236/1‑150 (MQ=255) cTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCg > 1:620875/1‑150 (MQ=255) cTTCCTTTATCTTTTCTTTCAACGATCAAAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCg < 1:2519890/150‑1 (MQ=255) ttCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGa > 2:2871367/1‑150 (MQ=255) ttCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGa > 1:497093/1‑150 (MQ=255) cTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGt > 1:226453/1‑150 (MQ=255) tATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCaa > 2:3171794/1‑150 (MQ=255) aTCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTGTAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAg < 1:2049251/150‑1 (MQ=255) aTCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATATATTTTAATCAACGAAAGACATCACCAAGTGAAATTAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAg > 1:923095/1‑150 (MQ=255) tctttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtcatc > 2:3804263/1‑150 (MQ=255) ctttcAACTATCACAAATTTAGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATTAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtcatca < 2:5061213/150‑1 (MQ=255) ctttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTtcatca < 1:2876814/150‑1 (MQ=255) tttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAg < 2:2226653/150‑1 (MQ=255) ttcAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGa < 2:2830936/150‑1 (MQ=255) gATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAgg < 2:2607104/150‑1 (MQ=255) gATCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAgg < 2:2158382/150‑1 (MQ=255) aTCACAAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGa < 1:4164689/150‑1 (MQ=255) cacaAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGAtt > 1:4024035/1‑150 (MQ=255) acaAATTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTg > 1:4440589/1‑150 (MQ=255) aaaTTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAg > 2:4651525/1‑150 (MQ=255) aaTTTCGTTTTATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGt > 2:3229126/1‑150 (MQ=255) tttATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAg > 1:237999/1‑150 (MQ=255) tttATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAg < 2:4531863/150‑1 (MQ=255) ttATTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCCGa > 2:4375655/1‑150 (MQ=255) aTTTCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGaaa < 2:2349243/150‑1 (MQ=255) tttCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGaaaa > 2:3813637/1‑150 (MQ=255) tCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAAtt < 2:2324966/150‑1 (MQ=255) tCTTTTTTCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAAtt < 2:3721990/150‑1 (MQ=255) ttttttCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTac < 2:527538/150‑1 (MQ=255) ttttCTCCGTTGAACTTTCAGTTTC‑TGTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTacac < 2:3950015/150‑1 (MQ=255) tttCTCCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACAcc > 1:3526539/1‑150 (MQ=255) ttCTCCGTTTAACTTTCTGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAATGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACAccc < 1:3123895/150‑1 (MQ=255) tctcCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACAcccc < 2:2658048/150‑1 (MQ=255) ctcCGTTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCct > 1:3555145/1‑150 (MQ=255) | CGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTC‑TTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTATGCCAGAAAATTACACCCCTG > CP009273/3275063‑3275356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |