| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,299,240 | A→C | 100% | intergenic (‑64/+90) | mtr ← / ← deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,299,240 | 0 | A | C | 99.0% | 1117.5 / ‑2.5 | 289 | intergenic (‑64/+90) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| Reads supporting (aligned to +/- strand): ref base A (3/1); new base C (144/141); total (147/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.23e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 289 total aligned reads displayed.
CCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCG > CP009273/3299093‑3299384 | cccTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCg < 2:591337/150‑1 (MQ=255) ccTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGa > 2:3385784/1‑150 (MQ=255) ccTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGa > 1:2793828/1‑150 (MQ=255) cTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAg > 1:793318/1‑150 (MQ=255) gcgcCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTa > 2:483120/1‑150 (MQ=255) cgcCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGGGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTAc > 1:655016/1‑150 (MQ=255) cAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACaaa > 2:2406001/1‑150 (MQ=255) aataatGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACaaaa < 2:1858154/150‑1 (MQ=255) ggTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑a < 2:2208907/150‑1 (MQ=255) gATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGcc > 2:1228338/1‑150 (MQ=255) gATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCGTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGcc < 2:3638582/150‑1 (MQ=255) aTAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGccc > 1:100226/1‑150 (MQ=255) tAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGcccc > 1:2335616/1‑150 (MQ=255) tAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGcccc < 2:4727499/150‑1 (MQ=255) tAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGGTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGcccc > 1:2516165/1‑150 (MQ=255) aaTCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCg > 1:4417436/1‑150 (MQ=255) aTCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGa < 1:4735482/150‑1 (MQ=255) caccacGCCGCCTAGCAGCGAGGGTGAGGTTTGGGTGGTGGTTAGTGTTGCAATGAGGGCTTCTCTCAAGTGAAAAATAGTGCGACTGCGTTGTTATGCTTTGCACTGTACCAGTACCCGTGTACAAAAGACAG‑AAAAAAAGCCCCGATg < 1:617292/150‑1 (MQ=255) caccacGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATg < 1:3368622/150‑1 (MQ=255) cccacGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTATTGTTGCCATGAGGGATTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTTTGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATgg < 1:2158024/149‑1 (MQ=255) accacGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATgg > 1:4014013/1‑150 (MQ=255) cacGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTa > 2:3465137/1‑150 (MQ=255) acGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAACGACAG‑AAAAAAAGCCCCGATGGTaa < 2:4908710/150‑1 (MQ=255) ccgccAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTaaaaa < 2:401061/150‑1 (MQ=255) cgccAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAAt < 2:1729482/150‑1 (MQ=255) ccAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCg < 2:451091/150‑1 (MQ=255) aaGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCggg > 2:3025375/1‑150 (MQ=255) agcagcGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCgggg < 1:1286918/150‑1 (MQ=255) gcagcGCCGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGc < 2:2235971/150‑1 (MQ=255) agcGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCTTTGTTTTGCATTGCACTGTACCAGTACCCGAGTACAAAAGCCAGAAAAAAAAGCCCCGATGGTAAAAATCGGGGCt < 1:4515970/150‑1 (MQ=255) cGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCAGTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGta < 1:4173428/150‑1 (MQ=255) gACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGtat < 2:210409/150‑1 (MQ=255) gACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGtat > 2:4521935/1‑150 (MQ=255) ggTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGtatata < 2:770664/150‑1 (MQ=255) aCGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATAtattat > 1:5034629/1‑150 (MQ=255) ttGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTa > 1:3106616/1‑150 (MQ=255) gtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTgtgt < 2:1735815/150‑1 (MQ=255) tttgtgtTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTCCCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGtt < 1:1937470/147‑1 (MQ=255) tAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTc > 1:2008348/1‑150 (MQ=255) tAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTc > 1:1488905/1‑150 (MQ=255) aGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCg < 1:2640516/150‑1 (MQ=255) aGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCg < 2:1375275/150‑1 (MQ=255) tgtTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCt < 2:23404/150‑1 (MQ=255) gtTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTg < 1:4967316/150‑1 (MQ=255) tGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGtt < 2:971545/150‑1 (MQ=255) cATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAg < 2:3189276/150‑1 (MQ=255) aTGAGGGCTTCTCTCCATTGAAAAATAGTGCGACTGCTTTGTTATGAATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGc < 1:3902729/150‑1 (MQ=255) aTGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGc > 1:3029896/1‑150 (MQ=255) tGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCg > 2:530372/1‑150 (MQ=255) gCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCgatgat > 2:1419099/1‑150 (MQ=255) cTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGAtt > 1:980959/1‑150 (MQ=255) ttCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTa > 1:4340476/1‑150 (MQ=255) ttCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTa < 2:1193099/150‑1 (MQ=255) tctctcCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTAc < 1:4264498/150‑1 (MQ=255) ctctcCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACg < 1:3634455/150‑1 (MQ=255) ctctcCAGTGAAAAATAGAGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGGACAAAAGACAG‑AAAAAAAGCCCCGATGGTTAAAATCGGGGCTGTATATAGTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACg < 2:4388681/150‑1 (MQ=255) tctcCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGc > 1:3913844/1‑150 (MQ=255) tctcCAGAGAAAAAGAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGc < 2:2950834/150‑1 (MQ=255) tcCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCAt < 2:1971474/150‑1 (MQ=255) ccAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATc < 1:3447899/150‑1 (MQ=255) ccAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGGAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATc < 2:4166791/150‑1 (MQ=255) tGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATcacca < 2:923775/150‑1 (MQ=255) gAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATcaccac > 2:158497/1‑150 (MQ=255) aaaaaTAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCaccacc > 2:674822/1‑150 (MQ=255) aaaaTAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCg > 2:4274573/1‑150 (MQ=255) aaaaTAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCg > 1:1209407/1‑150 (MQ=255) aaTAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTCCAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGaa > 2:5060398/1‑150 (MQ=255) tAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTACAAATCGGGGCTGGATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAac > 2:1072827/1‑150 (MQ=255) aGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacg < 1:5044512/150‑1 (MQ=255) aGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacg < 1:1655656/150‑1 (MQ=255) aGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacg > 2:5148610/1‑150 (MQ=255) aGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacg > 1:459937/1‑150 (MQ=255) gTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacga < 1:2399196/150‑1 (MQ=255) gTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCAGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacga < 1:4307036/150‑1 (MQ=255) tGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacgac > 1:1355565/1‑150 (MQ=255) gCGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacgacg < 2:4785834/150‑1 (MQ=255) cGACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacgacga > 1:1360238/1‑150 (MQ=255) gACTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAacgacgac < 1:2124830/150‑1 (MQ=255) cTGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAAcgacgacga < 2:3901301/150‑1 (MQ=255) tGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACgacgacgac > 1:1085739/1‑150 (MQ=255) tGCGTTGTTATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACgacgacgac > 1:4829226/1‑150 (MQ=255) gttgttATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCgg > 1:2861420/1‑150 (MQ=255) gttgttATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCgg < 2:2903993/150‑1 (MQ=255) gttgttATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCgg > 2:2867001/1‑150 (MQ=255) ttgttATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGt > 1:1611355/1‑150 (MQ=255) ttgttATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGt > 2:2815297/1‑150 (MQ=255) ttgttATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGt > 1:3833421/1‑150 (MQ=255) ttgttATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGt < 2:1545128/150‑1 (MQ=255) tATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGaa > 1:1844186/1‑150 (MQ=255) tATGCATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGaa < 1:4122753/150‑1 (MQ=255) cATTGCACTGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAatcat > 1:3804035/1‑150 (MQ=255) ttGCACTGTACCAGTACCCGAGTACAAAAGACAT‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAAtcatca < 1:1335123/150‑1 (MQ=255) tgtcACTGTCCCTGTCCCCGAGAAAAAACCACCC‑AAAAAAAGCCCCTATGTTAAAAATGGGGGCTTTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAAtcatca < 1:55818/147‑1 (MQ=255) tGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGAcgc > 2:1294050/1‑150 (MQ=255) tGTACCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGGAGAATCATCACGAcgc > 2:3977336/1‑150 (MQ=255) aCCAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGa > 2:2454823/1‑150 (MQ=255) cAGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAgc > 1:2981732/1‑150 (MQ=255) aGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTCTATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAgcg > 1:4958385/1‑150 (MQ=255) aGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAgcg > 1:2823876/1‑150 (MQ=255) aGTACCCGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAgcg > 2:3299776/1‑150 (MQ=255) | CCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAG‑AAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCG > CP009273/3299093‑3299384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |