| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,334,687 | G→T | 100% | A21A (GCG→GCT) | kdsD → | D‑arabinose 5‑phosphate isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,334,687 | 0 | G | T | 97.7% | 849.3 / 6.6 | 263 | A21A (GCG→GCT) | kdsD | D‑arabinose 5‑phosphate isomerase |
| Reads supporting (aligned to +/- strand): ref base G (4/2); new base T (131/126); total (135/128) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 263 total aligned reads displayed.
TATTATTAACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATGGCGGCAAC > CP009273/3334541‑3334833 | tattatTAACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTAtt < 1:4760029/150‑1 (MQ=255)tattatTAACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTAtt > 2:4569686/1‑150 (MQ=255) attattAACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTg > 2:2362034/1‑150 (MQ=255) ttattaACTGGCGGATTTTTCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGa < 2:4989293/150‑1 (MQ=255) tattaACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGaa > 1:2023811/1‑150 (MQ=255) ttaACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACg > 2:3785759/1‑150 (MQ=255) taAATGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCTGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGt > 2:3893107/1‑150 (MQ=255) aCTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGa < 1:1919746/150‑1 (MQ=255) cTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGaa > 2:3509329/1‑150 (MQ=255) ggATGTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCt < 2:3174029/150‑1 (MQ=255) atatATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCAGGCTATTGAACGGGAATGCCTgg > 2:4801566/4‑150 (MQ=255) tttATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGc > 2:2795832/1‑150 (MQ=255) tttATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGc > 1:1053254/1‑150 (MQ=255) tttATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGc < 2:521715/150‑1 (MQ=255) tATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCgg < 1:1576006/150‑1 (MQ=255) tATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCgg > 2:5099441/1‑150 (MQ=255) aTCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGa > 2:4159353/1‑150 (MQ=255) aTCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCGATTGAACGTGAATGCCTGGCGGa > 2:628857/1‑150 (MQ=255) tCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAg < 1:376746/150‑1 (MQ=255) tATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCtt < 1:3891181/150‑1 (MQ=255) aTGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTg < 2:1467020/150‑1 (MQ=255) ctggcGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCa < 2:3214164/150‑1 (MQ=255) ggcGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAAt > 2:2287125/1‑150 (MQ=255) cGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTTGCGGAGCTTGATCAATAc > 2:4381379/1‑150 (MQ=255) gATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACa > 1:74824/1‑150 (MQ=255) aTGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACat > 1:2295960/1‑150 (MQ=255) tgttgtACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACatc > 2:3490490/1‑150 (MQ=255) tgttgtACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACatc > 1:3488493/1‑150 (MQ=255) gttgtACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACatca < 2:2087503/150‑1 (MQ=255) tACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACatcaatca < 1:904775/150‑1 (MQ=255) aCTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAg < 2:266209/150‑1 (MQ=255) ggTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAAt > 2:2981947/1‑150 (MQ=255) gTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAAtt > 1:4535118/1‑150 (MQ=255) tATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTc < 1:4817979/150‑1 (MQ=255) tATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTc > 2:855540/1‑150 (MQ=255) tATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTc < 2:3666824/150‑1 (MQ=255) aTCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCa < 1:4343069/150‑1 (MQ=255) gCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGc > 1:3199396/1‑150 (MQ=255) ccAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCt > 1:3824733/1‑150 (MQ=255) cAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCtt < 2:3758850/150‑1 (MQ=255) cAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCtt > 1:578853/1‑150 (MQ=255) cAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCtt > 2:3025645/1‑150 (MQ=255) aaTACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTg > 1:2435712/1‑150 (MQ=255) aaTACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGGGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTg > 1:2991132/1‑150 (MQ=255) gTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGa > 1:1436271/1‑150 (MQ=255) gTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGa < 2:1105268/150‑1 (MQ=255) tGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGaaa > 1:3520852/1‑150 (MQ=255) aaTAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAg > 2:2004604/1‑150 (MQ=255) tAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGAt < 1:2341400/150‑1 (MQ=255) aaCTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATg < 1:2634653/150‑1 (MQ=255) aCTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGt < 1:4340513/150‑1 (MQ=255) aaCGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGgt < 1:245773/150‑1 (MQ=255) aaCGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGgt > 1:5139218/1‑150 (MQ=255) aaCGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGgt < 1:1716883/150‑1 (MQ=255) cgtaTTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGgtgt < 1:1326009/147‑1 (MQ=255) gCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTa > 1:3282839/1‑150 (MQ=255) aTGTCGCACGTAGAGTTACAACCGGGGTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAggg > 2:1313961/1‑150 (MQ=255) tGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGa < 2:3828336/150‑1 (MQ=255) gTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGaa > 2:2667238/1‑150 (MQ=255) cACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGtt > 2:5032712/1‑150 (MQ=255) aCGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTg > 2:4895901/1‑150 (MQ=255) cGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTgt > 2:1276241/1‑150 (MQ=255) tAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTgtcg > 2:4512458/1‑150 (MQ=255) tAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGATATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTgtcg < 1:3656405/150‑1 (MQ=255) agTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCa < 1:3278458/150‑1 (MQ=255) ttACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATg < 1:2909888/150‑1 (MQ=255) tACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATgg < 2:4037361/150‑1 (MQ=255) tACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATgg < 1:1849231/150‑1 (MQ=255) aCAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATggg > 2:3314848/1‑150 (MQ=255) cAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATgggg < 1:5044709/150‑1 (MQ=255) aaCCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGACCGTTGTCGTCATggggc > 2:2198422/1‑149 (MQ=255) aaCCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGa > 1:228527/1‑150 (MQ=255) aCCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGAt < 1:3620326/150‑1 (MQ=255) ggTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGa > 1:2851398/1‑150 (MQ=255) ttttGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGaaa < 2:1325118/150‑1 (MQ=255) ttttGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGaaa < 2:3450153/150‑1 (MQ=255) ttttGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGaaa > 2:2299191/1‑150 (MQ=255) ttGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAAt > 2:525503/1‑150 (MQ=255) tGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATc < 2:2490527/150‑1 (MQ=255) tGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATc < 2:2400582/150‑1 (MQ=255) cAGCAAGCAGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCat > 1:442012/1‑150 (MQ=255) agcaagcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCata > 2:1681503/1‑150 (MQ=255) gcaagcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCatat > 1:265442/1‑150 (MQ=255) aagcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTg < 2:2986688/150‑1 (MQ=255) gcaGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTggg < 2:839936/150‑1 (MQ=255) caGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGc > 1:2474881/1‑150 (MQ=255) caGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGc > 1:1830808/1‑150 (MQ=255) caGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGc > 1:4981956/1‑150 (MQ=255) caGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGc > 1:4291959/1‑150 (MQ=255) aGGTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCg > 1:210947/1‑150 (MQ=255) gTAAAGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGaa < 2:3749509/150‑1 (MQ=255) aaaGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGaaaa > 2:1764126/1‑150 (MQ=255) aaaGAAGTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGaaaa > 1:4063620/1‑150 (MQ=255) aagaagTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGaaaaa > 2:3995825/1‑150 (MQ=255) gaagTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATg < 1:4602280/150‑1 (MQ=255) aagTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATgg < 2:3084918/150‑1 (MQ=255) gTCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATggcg > 1:322075/1‑150 (MQ=255) tCCTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATggcgg > 1:4773980/1‑150 (MQ=255) ccTGGCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATggcggc < 2:963530/150‑1 (MQ=255) ggCTATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGAGTAAATGGAAAGTTGTCGTCATGGGGATGGGAAAATCGAGGCATATTGGGCGAAAAATGGCGGCAAc > 1:2933222/1‑150 (MQ=255) | TATTATTAACTGGCGGATTTATCGTATGGCTGGCGATGTTGTACTGGTTATCGCCAATACTCGTTGAATAACTGGAAACGCATTATGTCGCACGTAGAGTTACAACCGGGTTTTGACTTTCAGCAAGCAGGTAAAGAAGTCCTGGCGATTGAACGTGAATGCCTGGCGGAGCTTGATCAATACATCAATCAGAATTTCACGCTTGCCTGTGAAAAGATGTTCTGGTGTAAAGGGAAAGTTGTCGTCATGGGGATGGGAAAATCGGGGCATATTGGGCGAAAAATGGCGGCAAC > CP009273/3334541‑3334833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |