| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,594,268 | C→T | 100% | intergenic (‑125/+120) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,594,268 | 0 | C | T | 97.1% | 902.0 / 10.8 | 277 | intergenic (‑125/+120) | rpoH/ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (7/1); new base T (127/141); total (135/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.19e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.32e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 277 total aligned reads displayed.
AAACTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAAT > CP009273/3594121‑3594413 | aaCTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAg < 2:2136402/150‑1 (MQ=255) cTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCt < 1:3835183/150‑1 (MQ=255) cTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCt > 1:3301237/1‑150 (MQ=255) cTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCt < 2:1973957/150‑1 (MQ=255) tttGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCtt < 1:1780830/150‑1 (MQ=255) tttGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTGTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCtt > 2:3086139/1‑150 (MQ=255) tGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTtgt < 2:3918971/150‑1 (MQ=255) gCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTtgtg < 2:1833959/150‑1 (MQ=255) cATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGa > 1:1868760/1‑150 (MQ=255) ttttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAAt < 1:1055442/150‑1 (MQ=255) tttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATa < 1:4086568/150‑1 (MQ=255) tttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATa < 1:1492742/150‑1 (MQ=255) tttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATa < 1:3126613/150‑1 (MQ=255) ttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATaa > 1:2464278/1‑150 (MQ=255) cagtcaTTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTTAGCTTGTGAATAAATTa > 2:1527360/1‑150 (MQ=255) cagtcaTTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTa > 2:1647724/1‑150 (MQ=255) caTTCAAATCCTCTCAATCGATATCGTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGca < 2:4927377/150‑1 (MQ=255) aTTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGcac < 2:2065800/150‑1 (MQ=255) aaaTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACaaaa > 1:1039587/1‑150 (MQ=255) aaaTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACaaaa > 1:3749408/1‑150 (MQ=255) aaaTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACaaaa > 1:3524316/1‑150 (MQ=255) aaaTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAATTCAATGTAAGCTTGTGAATAAATTACGCACaaaa < 1:4199492/150‑1 (MQ=255) aTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtg > 2:2469308/1‑150 (MQ=255) ccTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtgtg > 1:2418156/1‑150 (MQ=255) ctctCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGa < 1:4141122/150‑1 (MQ=255) tcAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAACTGTGACAt < 1:3930031/150‑1 (MQ=255) aaTCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATag < 2:2949375/150‑1 (MQ=255) aaTCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATag > 1:3918000/1‑150 (MQ=255) tCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATagag < 1:542629/150‑1 (MQ=255) tCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATagag > 2:4017597/1‑150 (MQ=255) gATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGAt > 2:3473704/1‑150 (MQ=255) atCGTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGaa < 2:3326178/150‑1 (MQ=255) cttctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAAt > 2:3895785/1‑150 (MQ=255) ctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATAcc < 1:1920816/150‑1 (MQ=255) tGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCg > 2:3005594/1‑150 (MQ=255) gcgcTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCggg > 1:4370552/1‑150 (MQ=255) cgcTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGa > 1:2182358/1‑150 (MQ=255) cgcTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCGTGTGACTAAATTACGCACAAAATGTGCCATAGAGATGAACTACCgggc > 1:4493215/1‑149 (MQ=255) gcTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTCTCCACAAGTTCAATGGAAGCGTGTGACTAAATTACGCACAAAAGGGGACCTAGAGAGGAAATACCGGGac > 2:298085/1‑149 (MQ=255) gcTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGaa > 1:4989247/1‑150 (MQ=255) cTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAag < 2:654038/150‑1 (MQ=255) ttCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAaga > 1:2349858/1‑150 (MQ=255) gTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACa > 1:4791577/1‑150 (MQ=255) tGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACaa > 2:17514/1‑150 (MQ=255) ggTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAAc < 2:3180606/150‑1 (MQ=255) ggTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAAc > 1:2520732/1‑150 (MQ=255) ggTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAAc > 2:4003408/1‑150 (MQ=255) acaacTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGtct < 2:127701/150‑1 (MQ=255) aacTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTctct > 2:3233984/1‑150 (MQ=255) acTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCtt < 1:1621036/150‑1 (MQ=255) acTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCtt < 2:1920395/150‑1 (MQ=255) cTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCttt > 1:889150/1‑150 (MQ=255) tgtgCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTc > 1:2764469/1‑150 (MQ=255) gCCAGAGCTTAAGAGCAACGAGGTGATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCt < 2:2121127/150‑1 (MQ=255) ccAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTg < 1:5153341/150‑1 (MQ=255) cAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGc < 2:2757866/150‑1 (MQ=255) agagCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCt < 2:2914128/150‑1 (MQ=255) gagCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTa < 1:1389167/150‑1 (MQ=255) agCTTAAGAGCAACGAGGTGATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTAc < 2:4336390/150‑1 (MQ=255) ttAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGa > 1:4483935/1‑150 (MQ=255) ttAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGa < 1:77735/150‑1 (MQ=255) ttAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGa < 2:494408/150‑1 (MQ=255) tAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGaa > 2:813049/1‑150 (MQ=255) tAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGaa > 2:1245246/1‑150 (MQ=255) gagCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAAccc < 1:4566142/150‑1 (MQ=255) agCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAAACCa > 1:2726148/1‑150 (MQ=255) gCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCAt > 2:263331/1‑150 (MQ=255) gCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCAt < 1:4727106/150‑1 (MQ=255) cAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCagt > 1:125558/1‑148 (MQ=255) cAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCAtt < 2:2167774/150‑1 (MQ=255) aCGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGc < 2:3628888/150‑1 (MQ=255) aCGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGc < 2:1014670/150‑1 (MQ=255) gAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAg > 1:3008032/1‑150 (MQ=255) aGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAgg < 1:3607233/150‑1 (MQ=255) aGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAgg > 2:2427524/1‑150 (MQ=255) ggTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAggg > 2:120402/1‑150 (MQ=255) ggTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAggg < 2:4233610/150‑1 (MQ=255) gTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGa > 1:2957150/1‑150 (MQ=255) gTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGa > 1:4399674/1‑150 (MQ=255) attaTTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAag < 1:2617001/147‑1 (MQ=255) aTTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt < 2:5048570/150‑1 (MQ=255) tCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGACAGAGtat > 2:4773648/1‑150 (MQ=255) cACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGtata < 1:4437387/150‑1 (MQ=255) aCTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATaa > 2:1404648/1‑150 (MQ=255) aTCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCttt > 1:1606893/1‑150 (MQ=255) gACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttatt < 2:4268131/150‑1 (MQ=255) gACCGTGATTTAATCCACAAGGTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGACCTACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttatt < 2:1707677/150‑1 (MQ=255) ccGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAACTGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTtattat < 2:3420296/150‑1 (MQ=255) tGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACAGAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCa > 2:1863849/1‑150 (MQ=255) tGATTTGATCCACAAGTTCACTGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGACATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCa < 2:1372694/150‑1 (MQ=255) aTTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAgg < 2:3196647/150‑1 (MQ=255) ttttATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATGGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGc < 1:2749901/150‑1 (MQ=255) tATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTa > 2:3746575/1‑150 (MQ=255) aTCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTaa > 2:3784794/1‑150 (MQ=255) tCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTaaa < 1:5051089/150‑1 (MQ=255) tCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTaaa < 1:990878/150‑1 (MQ=255) ccACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAg > 1:1137673/1‑150 (MQ=255) acaAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTg > 1:654041/1‑150 (MQ=255) aGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACTGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGTCGTAAAGTTGCg > 2:3282926/1‑150 (MQ=255) cAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGACCCCATTGCAGGGACAGAGTATAACACGCTTTGATTATTCAGGCGTCAAGTGGCggacg > 2:2660387/1‑146 (MQ=255) | AAACTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAAT > CP009273/3594121‑3594413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |