Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 3,662,660 | T→C | 100% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 3,662,660 | 0 | T | C | 98.0% | 932.0 / 3.0 | 248 | intergenic (‑112/‑292) | yhjA/treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
Reads supporting (aligned to +/- strand): ref base T (2/3); new base C (126/116); total (128/120) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.74e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 248 total aligned reads displayed.
CAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGATAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTTATA > CP009273/3662513‑3662806 | cagGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAg > 1:4715110/1‑150 (MQ=255) agGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAgg > 2:1367476/1‑150 (MQ=255) cGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGATAGGaatc > 2:2643556/1‑150 (MQ=255) cGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatc < 2:4923024/150‑1 (MQ=255) cGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatc > 1:3389902/1‑150 (MQ=255) cgcgGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatcaatc > 2:3239627/1‑150 (MQ=255) gcgGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAatcaatca > 2:1550531/1‑150 (MQ=255) gcgGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAatcaatca > 1:2857628/1‑150 (MQ=255) ggTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATcaatcaat < 2:2371610/150‑1 (MQ=255) gTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAAtt > 2:3627167/1‑150 (MQ=255) gTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAAtt < 1:3462450/150‑1 (MQ=255) tAAAACGTGAGACCCTCTTCATTATTCTTCCCTCCCGGTGGTGAGTGATTGGGACCCAGAAAATTTTCCAGAAGGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTa < 2:5107885/150‑1 (MQ=255) aaTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTAc > 1:4104978/1‑150 (MQ=255) tACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGAACCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACAt < 2:1918727/150‑1 (MQ=255) cGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGa > 1:4698364/1‑150 (MQ=255) gagaCCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAata > 1:1332534/1‑150 (MQ=255) ccATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATaaa < 2:1464259/150‑1 (MQ=255) cATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAAc > 1:1492358/1‑150 (MQ=255) aTTTTCATTATTCTTCACTCAGGGTGGTTAGTTATTGTGACCCATAAAATTTTCCAGAATGCTTCAAACGTCTCTGAGAGACAAAGCCATCATAAAAAACAGTGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACt < 1:3583053/150‑1 (MQ=255) tttCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTAt > 2:2089509/1‑150 (MQ=255) tattCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATaa > 2:1601664/1‑150 (MQ=255) cccTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGcc < 1:1415511/150‑1 (MQ=255) cTCACGGTGGTGTGTTATTGTGACCCAGAATATTTTCCAGAATGCTGAAAACGTCTCTTCGAGACAAAGCCATCATAAAAAACAGGGAGATACGATTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCtg < 2:2162621/150‑1 (MQ=255) ggtggtGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCt > 2:1313785/1‑150 (MQ=255) ggtgAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTAtt < 2:4112937/150‑1 (MQ=255) ggtgAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTAtt > 1:3001134/1‑150 (MQ=255) aTTGTGACCCAGAAAATTTTCCAGAATGCTGCACACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGAt < 1:664718/150‑1 (MQ=255) aTTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGAt < 1:2043385/150‑1 (MQ=255) tgtgACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCa < 1:3177162/150‑1 (MQ=255) tgACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCCGATCAgg > 2:3448443/1‑150 (MQ=255) tgACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAgg > 1:2257039/1‑150 (MQ=255) tgACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACAATCAATAAGATAGCCTGTGCCTATTACCCAGATCAgg > 1:374554/1‑150 (MQ=255) aCCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGaa > 1:3433349/1‑150 (MQ=255) ccAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATg < 1:1225667/150‑1 (MQ=255) ccAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATg > 2:2518394/1‑150 (MQ=255) aGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGc < 2:1120640/150‑1 (MQ=255) aGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGc > 2:4791689/1‑150 (MQ=255) aTTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATc > 1:820237/1‑150 (MQ=255) tttCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCAt > 2:1064580/1‑150 (MQ=255) tttCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCAt > 1:1661131/1‑150 (MQ=255) ccAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGAt > 2:4626213/1‑150 (MQ=255) aGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTg < 2:4019440/150‑1 (MQ=255) aaTGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcg > 2:3592050/1‑150 (MQ=255) aaTGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcg < 1:2471710/150‑1 (MQ=255) aTGTTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcgg < 1:1081406/150‑1 (MQ=255) tgctgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcggc > 2:1200294/1‑150 (MQ=255) tgctgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcggc > 1:1573180/1‑150 (MQ=255) gctgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcggcg < 2:2757332/150‑1 (MQ=255) ctgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCga > 1:1883588/1‑150 (MQ=255) ctgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCga > 1:575693/1‑150 (MQ=255) tgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCgag > 1:2896747/1‑150 (MQ=255) tgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCgag > 1:3044112/1‑150 (MQ=255) gcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCgaga > 2:3847538/1‑150 (MQ=255) cAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGagag > 1:3997178/1‑150 (MQ=255) aCGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAg < 2:1479662/150‑1 (MQ=255) cGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAgg < 1:4594802/150‑1 (MQ=255) cGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAgg < 1:3783561/150‑1 (MQ=255) gTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGa > 1:1913966/1‑150 (MQ=255) ctctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGAtt < 2:2257039/150‑1 (MQ=255) ctctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGAtt < 2:51605/150‑1 (MQ=255) tctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTg > 2:4250701/1‑150 (MQ=255) tctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTg > 1:2693748/1‑150 (MQ=255) ctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGa > 1:2316597/1‑150 (MQ=255) tGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGCTTGaa > 2:182079/1‑150 (MQ=255) tGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGaa > 2:3071367/1‑150 (MQ=255) agaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGtt < 2:971476/150‑1 (MQ=255) agaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGtt < 1:4834175/150‑1 (MQ=255) gaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTc > 2:781181/1‑150 (MQ=255) gaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTc < 2:2857628/150‑1 (MQ=255) cAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtg > 1:1997960/1‑150 (MQ=255) aaaGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtga > 1:2342098/1‑150 (MQ=255) aaaGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATAATGATTGAGTCGAGAGCAGGATTGAATGTTCtga > 1:4902021/1‑150 (MQ=255) ccATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaat < 2:4563014/150‑1 (MQ=255) catcatAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaatg > 2:2901082/1‑150 (MQ=255) catAAAAAACAGGGAGATATGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaatgaaa > 1:1023389/1‑150 (MQ=255) aaaaaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAaaca < 2:605756/150‑1 (MQ=255) aaaaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAaacaa < 1:92012/150‑1 (MQ=255) aaCAGGTAGATACGCTTTTTGACAGTAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAacaaca < 2:4715110/150‑1 (MQ=255) aaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAacaaca > 2:3384329/1‑150 (MQ=255) aaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAacaaca > 1:3926204/1‑150 (MQ=255) aCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAacac > 1:4293466/1‑150 (MQ=255) aCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAacac > 1:529291/1‑150 (MQ=255) tgggAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCa > 2:4962721/2‑150 (MQ=255) gggAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCaa > 2:4409476/1‑150 (MQ=255) gggAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCaa < 1:2137467/150‑1 (MQ=255) ggAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCaaa < 2:1235869/150‑1 (MQ=255) agaTACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATc < 1:1495909/150‑1 (MQ=255) agaTACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATc > 2:723379/1‑150 (MQ=255) gaTACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCg < 1:3857379/150‑1 (MQ=255) aTACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCgg < 1:367079/150‑1 (MQ=255) tACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGt < 1:1194040/150‑1 (MQ=255) tACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGt < 1:1067482/150‑1 (MQ=255) aCGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTa < 2:5013578/150‑1 (MQ=255) aCGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTa < 1:4191391/150‑1 (MQ=255) cTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTAttt > 1:4376490/1‑150 (MQ=255) cTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTAttt < 1:3480700/150‑1 (MQ=255) tttttGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTAtttt < 1:1313785/150‑1 (MQ=255) tttttGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTAtttt < 2:1079371/150‑1 (MQ=255) ttttGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTAttttt < 1:1367476/150‑1 (MQ=255) tGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTtata > 2:3717300/1‑150 (MQ=255) | CAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGATAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTTATA > CP009273/3662513‑3662806 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |