| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 360,181 | G→C | 5.3% | intergenic (‑115/+480) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 360,181 | 0 | G | C | 5.3% | 583.8 / 4.6 | 195 | intergenic (‑115/+480) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (56/126); new base C (10/3); total (66/129) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.32e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 206 total aligned reads displayed.
ACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCT > CP009273/360034‑360328 | aaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCcgg < 1:1723844‑M1/79‑1 (MQ=255)aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACCTTCAAATACGCAACcgg > 1:305775/1‑149 (MQ=255) cATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCTGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCcggcg > 1:3889490/1‑149 (MQ=255) cATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCcggcg < 2:282220/149‑1 (MQ=255) cccagataaaccgacaggccccgtctttcgaatgagcatttctttttatttgatccctggggaataATTTCCTGGCATTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGa > 2:2969237‑M1/67‑149 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGAtt < 2:2466099/149‑1 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGAtt < 2:1057398/149‑1 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTGAG‑CAACCTTCAAATACGCTCCCGGCGGATTTg > 1:4271232/1‑149 (MQ=25) ataaaacgaaaggcccagtctttcgactgagcctttcgtgttatttgatgcctggggacttAATTCCTGGCAGGTTATGGCGGGCGTCCGGCCCGCCCCCCTCCGGGCCGTTGCTTCG‑CCACGGTCACATCCGCTCCCGGCGGATgtgt < 2:3167483‑M1/88‑1 (MQ=255) taaaacgaatggcccagtctttcgactgagcctttcgtgttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCTGCG‑CTACGTGCCATTCCGCTCCcggcggagtggtc < 2:3227992‑M1/89‑7 (MQ=255) ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:1770437/149‑1 (MQ=255) ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTCG‑CAACGGTGAAATCCGCTCCCGGCGGATTTGtgc > 1:2100904/1‑147 (MQ=255) aaaacgaaaggcccagtctttcgactgagcctgtcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAAACCCCACCCGGCGGAGTTGTcc < 1:3261061‑M1/90‑1 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAACCCTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTAc < 2:3026828/149‑1 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCG‑CAACCTTCAAAACCGCCCCCCGCGGATTTGTACTaa > 1:1254259/1‑148 (MQ=25) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTAc < 2:612541/149‑1 (MQ=255) aGTGCTGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGga < 1:3882380/149‑1 (MQ=255) tGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTGG‑CAACGATCAAATAACCTCCCGGCGGATATGTAATACTCAGgaga > 1:257990/1‑149 (MQ=21) gccggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTGCG‑CAACCTTCAAAAACGCACCCCGCGGATTTGTCCGACGCAGgaggg > 1:3866592/4‑147 (MQ=21) ggAGCTCCGATGATACGCTGTCAAACAGGAGAATTCCGATCCCCAATTCCTGGCAGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt < 1:306151/149‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt > 2:645097/1‑149 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTc < 1:1415446/149‑1 (MQ=255) tttcgactgagcctttcgttttatgtgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTTTCCTACTCAGGAGAGCGTTCa < 1:2483490‑M1/108‑1 (MQ=255) cgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATACGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCg < 2:3723694‑M1/111‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAAAGTTCAAATACGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGa < 1:4315509‑M1/112‑1 (MQ=255) actgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGac < 2:3883477‑M1/113‑1 (MQ=255) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaa < 1:681313/149‑1 (MQ=255) tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaa > 2:1723844‑M1/35‑149 (MQ=255) tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaa < 2:4007011‑M1/115‑1 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCG‑CAACGTTCAAAAACGCTCCCCGCGGAGTTGTCCGACTCAGGAGAGCGTTCACCCacaaa > 2:817732/1‑149 (MQ=18) agcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCCGGAGAGCGTTCACCGacaaac < 2:295492‑M1/117‑1 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCAACCCTCCGGGCCGTTGCTTCG‑CAAAGTTAAAATACGCTCCCGGCGGATTTTTACTACTCAGGAGTGCGTTAACCGACAaaaaac < 1:1428283‑M1/120‑1 (MQ=255) tcgttttatttgatgcctggggaattAATTCCGGGCAGTTTATGGCGGGCGTCCTGACCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGATCGTTCACCGACAAACAACAGa > 2:818787‑M1/27‑149 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGAt < 2:3241591/149‑1 (MQ=255) cAAACTTGAGATTTCCGATCCCCATTTCCTGGCTGTTTTGGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaa < 1:2138529/149‑1 (MQ=14) cATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCG‑CAAAGTTCAAAAAAGCGCCCGGCCGGTTTTTGCTACACAGGAGAGGGTTCACCGACAAACAACAGATaaaaag > 1:1004222/1‑147 (MQ=17) atttgatgcctggggaattAAGTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGAGTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACAACAGATAAAACg < 2:1019065‑M1/130‑1 (MQ=255) tttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAgataaaaaga < 2:1949939‑M1/131‑4 (MQ=255) aggagaAGTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGa < 2:1300609/147‑1 (MQ=255) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGa < 2:2719994/149‑1 (MQ=255) tgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGGTCAAATCCGCTCCCCGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACACAAAAAACGaaa < 2:1277382‑M1/133‑1 (MQ=255) gttatttCCGATACAAAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaaa < 2:2100904/144‑1 (MQ=255) gttggagggggaattAATTCGTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg > 1:3916785‑M1/16‑149 (MQ=255) gatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAc > 1:1373184‑M1/16‑124 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGGGTGG‑CCACGGTGAAAAAACCTACCCGCGGGTTTGTGCGAATGAGGCGAGCGTTGACCGAGCAAAAACACAAAAAACGgaatg > 1:3739242/1‑147 (MQ=9) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGGGGGTGGCCAACTTACAAA‑ACGCTCCCCGGGGGTTTTTGCTACACAGGAGTGGGTTGACCGCCAAACAACACATaaaaacaaaag > 1:4132485/1‑142 (MQ=9) atgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg < 2:325217‑M1/135‑1 (MQ=255) aaTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGc < 2:3843094/149‑1 (MQ=255) gatgtgtaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc > 2:1310773‑M1/12‑149 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCa < 2:4117811/149‑1 (MQ=40) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCa < 2:1325889/149‑1 (MQ=40) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCa < 1:1660775/149‑1 (MQ=40) tCCGAGCCCCAATTCCTGGCTGTTTTGGGGGGGCGACCGGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCa < 1:1887275/149‑1 (MQ=11) ggATCCCCAATTCCTGGCAGTTTTGGGCGGGCGTCCTGCCTGCCACCCTCCGGGCCGTTGCTTCG‑CAACTTTCAAATCCGATCCGGGGTTATTTGTCCTACTATGGAGAGCTTTCACCGACAAACAACATATAAAACGAAAGGCCCAGt < 1:3081560/148‑1 (MQ=11) gggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCG‑CAACGTTCAAAACCGCGACCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACAACAGATAAAAAGAaaggcccccta < 1:3252538‑M1/142‑5 (MQ=255) aTCCCCAATTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt < 1:1394915/149‑1 (MQ=38) taattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt > 2:2598054‑M1/6‑149 (MQ=255) tCCCCAATTCCTGGCTTTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt < 1:2777244/149‑1 (MQ=255) cccccAATTCCTGGCTGTTTTGGGGGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCtt < 1:913294/148‑1 (MQ=11) ccccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTAAAATACCCTCCCGGCGGAGTTGTCCTACTCAGGAGAGCGTTAACCGACAAACAACAGATTAAAAGTAAGGCCAAGtagtt > 2:2369273/1‑145 (MQ=11) attaaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCG‑CAAACGTCAAATCCGCACCCCGCGGATTTGTACTACAACGGAGAGCGGTCACCGCCCAACCACACAAAAAAAGAAAGGCCCCCTCttta > 1:3230458/4‑148 (MQ=2) attAATCCCTGGCAGTTTTGGGCGGGGGGCCGGCCCGCCACCCCCCGGGCCGTTGCTTCG‑CAACGTTCACATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc > 1:326174‑M1/4‑149 (MQ=255) ttaaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAAAACCCACCCCGCGGATTTTTACTACAAAGGAGAGCGTTAACCGACAAAAAAAAAATAAAACTAAAGGCCCCGTCTTTCg > 1:2178522/3‑149 (MQ=11) ttAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCg < 2:4373831‑M1/147‑1 (MQ=255) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCG‑CAACGGTCAAAAACGCTCCCGGCGGGTTTGTCCAAAAAAGGAGAGCGTTGAACGACAAACAACAGATAAAAAGAAAGGCCCAGTCTTTCg > 1:305100/1‑149 (MQ=11) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCg > 2:3283950/1‑149 (MQ=34) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATACGCTCCCGGCGGATTTGTACTACTCAGGAGAGCGTTAACCCACAAACAACAAAAAAAACGAAAGGCCCAGTCTTTAGAc > 1:2849131/1‑149 (MQ=11) aaTTCCGGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc < 2:2615702/149‑1 (MQ=17) aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt > 2:2878698/1‑149 (MQ=32) ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTAGACTg > 2:1407629/1‑149 (MQ=14) tCCTGGCTGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 2:1185296/149‑1 (MQ=11) tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaaa > 2:3191435/1‑130 (MQ=11) tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaaa < 1:3191435/130‑1 (MQ=11) tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:4350363/149‑1 (MQ=11) tCCTGGCAGTGTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 2:3074470/149‑1 (MQ=11) gCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTCCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 2:1480688/149‑1 (MQ=11) ccGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 2:2452455/149‑1 (MQ=32) gCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 2:908274/149‑1 (MQ=33) gCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:128899/149‑1 (MQ=33) gCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:2758710/149‑1 (MQ=33) ccACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt < 2:1895108/149‑1 (MQ=34) cACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattg < 2:540351/149‑1 (MQ=35) cccTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg > 2:2047182/1‑149 (MQ=37) gggCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACCAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCGGGGGACGTGGGaattaa > 2:1038082/1‑149 (MQ=255) ccGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACACACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTGGATTTGATGCCGGGGGCAGTGGGCATTAATTc > 1:836115/1‑149 (MQ=11) ggtGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTACACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCtt < 1:2291214/147‑1 (MQ=255) cAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaa > 1:728570/1‑149 (MQ=255) cAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaa > 2:3681640/1‑149 (MQ=255) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAGGTGTTGAAGACGaac > 2:4037726/1‑148 (MQ=255) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTGTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaaa > 2:178535/1‑149 (MQ=255) aCGTTCAAATCCGCTCCCGGCGGATTTGTCCGACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAg > 2:1626687/1‑149 (MQ=255) gTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAggg < 1:1317752/149‑1 (MQ=255) gTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAggg < 1:2047182/149‑1 (MQ=255) ttCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGc > 1:3463933/1‑149 (MQ=255) cAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCt > 1:1815307/1‑149 (MQ=255) cGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAt < 1:2878698/149‑1 (MQ=255) gCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATa > 1:2649643/1‑149 (MQ=255) gCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTACACCGACAAACAACAGATCAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATa < 1:54111/149‑1 (MQ=255) cTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACACCCGATACAACGAACGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATAc < 2:3131453/149‑1 (MQ=255) cTCCCGGCGGATTTGGCCTACGCCGGAGAGCGTTCACCGACAAACAACAGCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATAc < 1:295492/149‑1 (MQ=255) | ACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCT > CP009273/360034‑360328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |