| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 613,891 | T→A | 8.7% | L61Q (CTG→CAG) | fepE → | regulator of length of O‑antigen component of lipopolysaccharide chains |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 613,891 | 0 | T | A | 8.7% | 673.3 / 4.7 | 212 | L61Q (CTG→CAG) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains |
| Reads supporting (aligned to +/- strand): ref base T (55/130); new base A (24/2); total (80/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.56e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 217 total aligned reads displayed.
GCTCATTTTCCCGATTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAG > CP009273/613743‑614039 | gCTCATTTTCCCGATTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCt > 2:1802204/1‑149 (MQ=255) tCATTTTCCCGATTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑c > 1:2889180/1‑149 (MQ=255) ttttCCCGATTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGATTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGc < 2:1017115/149‑1 (MQ=255) ccGATTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCaaaaa < 1:3498401/149‑1 (MQ=255) ccGATTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCaaaaa < 1:2144801/149‑1 (MQ=255) ccGATTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCaaaaa < 2:3173270/149‑1 (MQ=255) cGATTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTTCGGTTTCCTGCGCAGGCTTGCTGATCTCATTACTACAG‑CCGCaaaaaa > 1:2788517/1‑148 (MQ=255) cGATTATCCTCCGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAAt < 2:3450193/149‑1 (MQ=255) aTTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTGTTTGGGTTTTGCGGCGGCGGCGTGCTGATCTATTTAATACTG‑CCGCCAAAAAgg > 1:390838/1‑149 (MQ=255) ctctGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAACAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAgc < 1:1546949/149‑1 (MQ=255) tctGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTGGTTTGGTTTGGGGGCGGAGGCGTGGTGATATATTTAATACTT‑CCCCACAAAAGGACCAacg > 1:57960/1‑149 (MQ=255) ctGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAgcgc < 1:2142996/149‑1 (MQ=255) ctGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGGTTGCCTGCGCAGGCTTGCTGATCTCTTTAATCCTG‑CCGCAAACATGGACCAgcgc > 2:2288925/1‑149 (MQ=255) ggCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGGTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAACAATGGACCAGCgcgg > 2:4382277/1‑149 (MQ=255) gCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTTCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCgcggc > 2:307078/1‑149 (MQ=255) gCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCgcggc > 2:3242026/1‑149 (MQ=255) gCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGGCCAGCGCGGCGGTTg < 1:3865748/149‑1 (MQ=255) cccAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGt < 2:647384/149‑1 (MQ=255) cAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCa < 2:1413879/149‑1 (MQ=255) cAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCATTCATACTG‑CCGCACAAATGGACCAGCGCCGCGGTTGTCa > 2:4170019/1‑149 (MQ=255) cAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTGTTTGCGTTTTGCGGCGCAGGCGTTCTTATCTCTTTCAAACAGCCCCCAAAAATGTA‑CAGCCCGGCGGGTGTCa > 1:2357905/1‑149 (MQ=255) taataaTGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTGTTTTCGTTTGACGGGGCACGCGTGCGGATGTAATTTATACAT‑CCCCAAAAAAAGACCACCCCGGCGGttttgcacc > 1:4097977/1‑142 (MQ=255) aataatGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCG‑TTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCt < 2:755605/149‑1 (MQ=255) taatGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTTCGTTTTCCTTCGCAGGCTTTCTTATATCTTTCATACAG‑CCGCCAAAATGGTCCAGCGCGGCGGGTGTAACGCCTc > 2:2348355/1‑149 (MQ=255) atGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGTCGGTCGTTTTTTCGTTTTACTGCGCAGGCTTTCATCTCACATTAATCAAG‑CCCCAAAAAATGACCAGCGCGGCGGGTGGCAccccgaca > 2:2233459/1‑145 (MQ=255) atGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGGGTTTGCCTGGGCAGGCTTTCTGATATCTTTAATACTG‑GCGCAAAAATTGTCCAGCGCGGGGGTTGTCACGCCTCCa > 2:2784506/1‑149 (MQ=255) gAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTTCGGTTTCCTGCGCAGGCTTTCTGATATAATTAATACAG‑CCGCAAAAATTGACCAGCGCGGCGGGTGTCACGCCTCCAGa > 1:1787611/1‑149 (MQ=255) gAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATATCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGccaccaca > 2:2479430/1‑147 (MQ=255) gAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTGTTTGCGTTTTGCAGCGCAGGCTTGGTGATATATTTAAAACAT‑CCGCCAAAAATGTCCACCGCGGCGGTGGTCAAGCCACCCGa > 1:3538359/1‑149 (MQ=255) aaaTTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGaa < 2:1060839/149‑1 (MQ=255) tGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCACGCTTGCTGATAACATTCATACAG‑CCGCAAAAAAGGACCACCGCCGCGGTTGTCAAGCCACCAGaaacag > 1:3634107/1‑145 (MQ=255) tttACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTTCGTTTGCCTGCGCAGGCTTGCTGATCTCTATAAAACAG‑CCCCAAAAATTGACCAGCCCGGCGGTTGTCACCCCACCAGAACCAGTTc > 1:1397306/1‑149 (MQ=255) ttACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCa < 1:1585711/149‑1 (MQ=255) aattAATCTAATCTCATTTTTATGGCGGGCCAAAAAAAAGGTCATGGCGGTAGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGt < 1:757151/147‑1 (MQ=255) aCTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGt < 2:4315289/149‑1 (MQ=255) taatctaatcTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGGGGTTTCGGGGGCCGGCTTGCTGGTTTCTTTAATACGT‑CCGCCAAAATTGACCAGCGCGGCGGGTGGCACGCCACCACAACCAGTTAAGTGGc > 1:219508/1‑149 (MQ=255) taatctaatcTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGc < 2:434536/149‑1 (MQ=255) taatctaatcTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGc < 1:4240276/149‑1 (MQ=255) taatctaatcTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTGTTTGGGTTTGGCGGCGCCGGCGTGCTGATCTCTTTAATCCTG‑CCGCAAAAATTGACCAGCGCCGCGGTTGTCACGCCACCAGAACCAGTTGAGTggg > 1:219889/1‑148 (MQ=255) atctaatctCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTAATCCAG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCGGTTCAGTGGCaa > 2:2853765/1‑149 (MQ=255) ctaatctCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAaga < 2:3055433/149‑1 (MQ=255) taatctCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAagag < 2:2054428/149‑1 (MQ=255) aatctCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGGGTTTTCCGGCGCAGGCTTGCTGTTATATTTAAAACTT‑CCGCAAAAATTGACCCCCCCGGCGGGTGTCACGCCACCAGAAACTGGTCAGTGGCAAGAGt > 2:1863545/1‑149 (MQ=255) atctCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGtt > 2:2155733/1‑149 (MQ=255) atctCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGtt < 2:3867273/149‑1 (MQ=255) tctcAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTg < 1:887410/149‑1 (MQ=255) tcAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTGTTTGCGTGTGCCTGCGCAGGCGTGCTGATATCTTTCATACTG‑CCGCAAAAATGGACCAGCGCGGCGGGTGTCACGCCGCCAGAACCCGTTCAGTGGCAAGAGGTGga > 2:3758203/1‑149 (MQ=255) ttttATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGaaa < 2:140703/149‑1 (MQ=255) tGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCAtt < 2:1515948/149‑1 (MQ=255) ggCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTc < 1:2680045/149‑1 (MQ=255) ggCCAAAAAAACGGTCATGGCGGTCGTGTTTGCGTTTGCCTGCGCCGGCTTGGTGATCTCTTTCATACTG‑CCGCAAAAATGGACCAGCGCGGCGGGTGTCACGCCACCAGAACCTGGTCAGTGGCAAGAGTTGGCGAAATCATTAAcaa > 2:3045267/1‑147 (MQ=255) gCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTaa < 2:1426329/149‑1 (MQ=255) gCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCAG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTaa < 1:1533181/149‑1 (MQ=255) ccAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAg < 2:2578073/149‑1 (MQ=255) ccAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTGGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAg < 2:1944448/149‑1 (MQ=255) cAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGc < 2:1980909/149‑1 (MQ=255) aaaaaaaCGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCt < 1:1649442/149‑1 (MQ=255) aaaaaaaCGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCt < 1:3162990/149‑1 (MQ=255) aaaaaaaCGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCt < 1:3869769/149‑1 (MQ=255) aaaaaaCGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCtt < 2:929893/149‑1 (MQ=255) aaaaaCGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTc < 2:4063076/149‑1 (MQ=255) aaaaCGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCg < 1:3235894/149‑1 (MQ=255) aaaCGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCgt < 2:390827/149‑1 (MQ=255) aaaCGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATATCTTTCATACAG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCACCAGAACCAGTTCAGTGGCAAGAGTTTGAGAAATAATTAACAAAGCTTCgt > 2:2566716/1‑149 (MQ=255) aaCGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCgtg < 2:861530/149‑1 (MQ=255) tCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGctg < 1:4277482/149‑1 (MQ=255) tCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGctg < 1:288695/149‑1 (MQ=255) cGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGctggatctg < 1:945237/149‑1 (MQ=255) tCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGctggatctggat < 2:4395024/149‑1 (MQ=255) tttttGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATc < 1:1173297/149‑1 (MQ=255) ttGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCaaa < 2:3497366/149‑1 (MQ=255) tGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCAG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCaaaa < 2:2505533/149‑1 (MQ=255) tttGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGa > 2:2806562/1‑149 (MQ=255) ttGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGAt < 1:1372670/149‑1 (MQ=255) tGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATc < 1:880950/149‑1 (MQ=255) tGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTAc > 2:1220895/1‑149 (MQ=255) cAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGaa < 1:3797520/149‑1 (MQ=255) cAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGaa > 1:1578039/1‑149 (MQ=255) cAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGaa > 1:4230378/1‑149 (MQ=255) ggCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGc > 1:1195021/1‑149 (MQ=255) ggCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGc > 1:3421627/1‑149 (MQ=255) ggCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGc < 2:1536206/149‑1 (MQ=255) ttGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCAtt > 2:2110828/1‑149 (MQ=255) ttGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCAtt > 2:3330407/1‑149 (MQ=255) tGCTGATCTCTTTCATCCTG‑CCGCAAACATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAGTCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCAttt < 2:4134841/149‑1 (MQ=255) tGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCAttt < 2:4134375/149‑1 (MQ=255) tGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAAc < 2:366076/149‑1 (MQ=255) tGATCTCTCTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAAc < 2:4218107/149‑1 (MQ=255) gATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAAcc < 1:1941623/149‑1 (MQ=255) gATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAAcc < 1:1272238/149‑1 (MQ=255) gATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAAcc < 1:1902976/149‑1 (MQ=255) ctctTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGt < 1:3304300/149‑1 (MQ=255) ctTTCCTCCTG‑CAGCAAAAATGGACCAGCGCGGCTGTTTTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTTGATATCAAAATTGATCGTACAGAAGCATTTAACCTtttt < 2:2705965/149‑1 (MQ=255) tCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATc > 2:3924568/1‑149 (MQ=255) tCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATc > 1:4117491/1‑149 (MQ=255) aTCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCaa < 1:1802210/149‑1 (MQ=255) aTCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCaa < 1:854527/149‑1 (MQ=255) aTCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCaa > 2:674292/1‑149 (MQ=255) cTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCaagaa > 1:3887884/1‑149 (MQ=255) tG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCaagaag < 1:2014324/149‑1 (MQ=255) | GCTCATTTTCCCGATTATCCTCTGGCGTCGCCCAGTAATAATGAAATTGATTTACTTAATCTAATCTCAGTTTTATGGCGGGCCAAAAAAACGGTCATGGCGGTCGTTTTTGCGTTTGCCTGCGCAGGCTTGCTGATCTCTTTCATCCTG‑CCGCAAAAATGGACCAGCGCGGCGGTTGTCACGCCTCCAGAACCTGTTCAGTGGCAAGAGTTGGAGAAATCATTCACTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAG > CP009273/613743‑614039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |