Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,985,173 A→T 6.6% intergenic (‑73/+123) yecA ← / ← leuZ UPF0149 family protein/tRNA‑Leu

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,985,1730AT 6.6% 719.2 / 6.7 218intergenic (‑73/+123)yecA/leuZUPF0149 family protein/tRNA‑Leu
Reads supporting (aligned to +/- strand):  ref base A (103/92);  new base T (2/19);  total (105/113)
Fisher's exact test for biased strand distribution p-value = 1.24e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 218 total aligned reads displayed.

GTGGTCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATGGTACCCGGAGCGGGACTTG  >  CP009273/1985026‑1985316
                                                                                                                                                   |                                                                                                                                               
gTGGTCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAg                                                                                                                                                <  1:3241826/149‑1 (MQ=255)
 tGGTCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGt                                                                                                                                               <  1:3836510/149‑1 (MQ=255)
 tGGTCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGt                                                                                                                                               <  1:4416221/149‑1 (MQ=255)
 tGGTCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTGTTTGAGt                                                                                                                                               >  2:2789620/1‑149 (MQ=255)
   gTCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTgg                                                                                                                                             <  1:1185280/149‑1 (MQ=255)
   gTCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGATTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTgg                                                                                                                                             >  1:1613959/1‑149 (MQ=255)
    tCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGc                                                                                                                                            >  2:560137/1‑149 (MQ=255)
    tCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGc                                                                                                                                            <  2:2419607/149‑1 (MQ=255)
    tCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGc                                                                                                                                            >  2:263539/1‑149 (MQ=255)
      aGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTAAATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCtt                                                                                                                                          >  1:10028/1‑149 (MQ=255)
       gtgtTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCttt                                                                                                                                         <  2:4208898/149‑1 (MQ=255)
       gtgtTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCttt                                                                                                                                         >  2:2080362/1‑149 (MQ=255)
       gtgtTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCttt                                                                                                                                         >  1:1341179/1‑149 (MQ=255)
             tATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGt                                                                                                                                   <  1:3218848/149‑1 (MQ=255)
               tttGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGa                                                                                                                                 >  1:3421371/1‑149 (MQ=255)
               tttGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGa                                                                                                                                 >  2:943885/1‑149 (MQ=255)
               tttGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGa                                                                                                                                 >  1:258477/1‑149 (MQ=255)
                ttGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGAt                                                                                                                                <  2:3207604/149‑1 (MQ=255)
                 tGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGAtt                                                                                                                               <  2:1048782/149‑1 (MQ=255)
                       gAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAAt                                                                                                                         >  1:3118080/1‑149 (MQ=255)
                       gAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAAt                                                                                                                         >  1:562133/1‑149 (MQ=255)
                        aaTATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGGGATTAAAAAtt                                                                                                                        >  1:869177/1‑149 (MQ=255)
                               tCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAaggagg                                                                                                                 <  1:149860/149‑1 (MQ=255)
                                ccAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATTCTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAggg                                                                                                                <  1:2347316/149‑1 (MQ=255)
                                ccAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAggg                                                                                                                <  1:2326944/149‑1 (MQ=255)
                                ccAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAggg                                                                                                                >  2:4038191/1‑149 (MQ=255)
                                 cAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGgt                                                                                                               <  1:1111997/149‑1 (MQ=255)
                                 cAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGgt                                                                                                               <  1:1112071/149‑1 (MQ=255)
                                  aGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGgtg                                                                                                              <  1:769703/149‑1 (MQ=255)
                                   gCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGgtgt                                                                                                             >  1:3891642/1‑149 (MQ=255)
                                   gCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGgtgt                                                                                                             <  2:3701246/149‑1 (MQ=255)
                                   gCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGgtgt                                                                                                             >  1:1670572/1‑149 (MQ=255)
                                    ccATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTa                                                                                                            >  1:633714/1‑149 (MQ=255)
                                     cATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTaa                                                                                                           <  2:3602352/149‑1 (MQ=255)
                                     cATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTaa                                                                                                           >  2:317827/1‑149 (MQ=255)
                                     cATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTaa                                                                                                           <  1:2470590/149‑1 (MQ=255)
                                      aTTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAAc                                                                                                          <  2:1455199/149‑1 (MQ=255)
                                      aTTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAAc                                                                                                          >  1:3043547/1‑149 (MQ=255)
                                         ccAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGAc                                                                                                       <  2:1746388/149‑1 (MQ=255)
                                           aaCTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACaa                                                                                                     <  2:4364178/149‑1 (MQ=255)
                                              tCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGtt                                                                                                  <  2:2984784/149‑1 (MQ=255)
                                               cACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCATGTGGATATAAAATCTCCAGCAACTATCTTAAATTCCGGTCCGTAACAGAGATACTTTATGAGTTGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTg                                                                                                 >  1:1333023/1‑149 (MQ=255)
                                                aCTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGc                                                                                                <  2:2915984/149‑1 (MQ=255)
                                                aCTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGGTGc                                                                                                >  2:759088/1‑149 (MQ=255)
                                                 cTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACATTTTGAGTGGCTTTGCTGGTGTTTAAAAATTAAGGAGGGTGTAACGACAAGTTGCa                                                                                               >  2:3715139/1‑149 (MQ=255)
                                                    tCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGc                                                                                            >  1:976732/1‑149 (MQ=255)
                                                      gTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGcac                                                                                          <  2:1766723/149‑1 (MQ=255)
                                                      gTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGcac                                                                                          >  2:307105/1‑149 (MQ=255)
                                                      gTTTAACGGTCCCGTTTTCATACGCTTGTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGcac                                                                                          <  1:790181/149‑1 (MQ=255)
                                                       tttAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGcaca                                                                                         >  2:4062761/1‑149 (MQ=255)
                                                               tCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAacc                                                                                 >  2:2638984/1‑149 (MQ=255)
                                                               tCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAacc                                                                                 >  2:1274560/1‑149 (MQ=255)
                                                                cccGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAacca                                                                                <  2:2847159/149‑1 (MQ=255)
                                                                cccGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAacca                                                                                <  2:149568/149‑1 (MQ=255)
                                                                  cGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAaccacc                                                                              <  1:1394826/149‑1 (MQ=255)
                                                                   tttttAATACGGTTTTCCTTGTTTATCTCAACTCGCCAGCACATATCTTACATGCCGTTCCTTATCAGATATACTTTTTGTGTGGATTTGCTGGTTATTAAAAATTATGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCAccc                                                                             <  1:2637249/148‑1 (MQ=255)
                                                                   gTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCAccc                                                                             <  2:3948606/149‑1 (MQ=255)
                                                                    ttttCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCg                                                                            >  1:3692088/1‑149 (MQ=255)
                                                                     tttCATACGATTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGATATACTTTTTGAGTGGCTTTGGTGGTGATTAAAAATTAAGGTGGGTGTAACGACATGTTGCAGGCACAAAAAAACCACCCGa                                                                           <  1:2725754/149‑1 (MQ=255)
                                                                       tCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAATCCACCCGAAg                                                                         >  2:1662749/1‑149 (MQ=255)
                                                                         aTACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCGGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAATTTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAggt                                                                       <  1:1601114/149‑1 (MQ=255)
                                                                          taggCTTTTCCTTGTGGATCTCCACTCGCCTGCACCTATGTTACTGGCCGGTCGGTATCTGATATATTTTTTGTGTGGCTTTGGTGGTGATTAAAATTTAAGGTGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAggtg                                                                      <  1:1460179/146‑1 (MQ=255)
                                                                          tACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAggtg                                                                      >  2:1458516/1‑149 (MQ=255)
                                                                           aCGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAggtgg                                                                     <  1:3557438/149‑1 (MQ=255)
                                                                            cGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAggtggt                                                                    <  1:2497736/149‑1 (MQ=255)
                                                                             gCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGtt                                                                   >  2:4286067/1‑149 (MQ=255)
                                                                              cTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGATATACTTTTTGAGTGGCTTTGCTGGTTATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGttt                                                                  <  1:1835158/149‑1 (MQ=255)
                                                                                tttCCTTGTGGATCTCAACTCTCCAGCACATATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGTTGATTAAAAATTAAGGAGGGTGTAACGAAAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCa                                                                <  2:1870634/149‑1 (MQ=255)
                                                                                tttCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCa                                                                <  2:1503027/149‑1 (MQ=255)
                                                                                     ttGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGaca                                                           >  1:2814404/1‑149 (MQ=255)
                                                                                     ttGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGaca                                                           >  1:4208325/1‑149 (MQ=255)
                                                                                      ggtgtATCACAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGCGGGTGTAACGAAAATTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGacac                                                          <  2:1084556/148‑1 (MQ=255)
                                                                                          gATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCt                                                      >  1:95314/1‑149 (MQ=255)
                                                                                          gATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCt                                                      >  2:1439257/1‑149 (MQ=255)
                                                                                            tctcAACTCGCCAGCACATATCTTACATGCGGGTCCTTATCTGAGATATTTTTTGTGTGGCTTTGGTGGTTATTAAAAATTATGGTGGGTTTAACGACATGTTGCAGGCAAAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTa                                                    <  1:2048755/149‑1 (MQ=255)
                                                                                                 aCTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCt                                               >  2:4359831/1‑149 (MQ=255)
                                                                                                  cTCGCCAGCACCTATCTTACATGCCGGTCGGTATCAGAGATACTTTTTGTGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCtt                                              <  2:1522873/149‑1 (MQ=255)
                                                                                                   tCGCCAGCACCTCTCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGACGGTGGTTTCACGACACTGCTTATTGCttt                                             <  2:3937548/149‑1 (MQ=255)
                                                                                                   tCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCttt                                             <  2:3278589/149‑1 (MQ=255)
                                                                                                           aCCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTAt                                     >  1:3358772/1‑149 (MQ=255)
                                                                                                            acTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTATGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTAtt                                    <  2:1015041/148‑1 (MQ=255)
                                                                                                              tATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCt                                  >  2:618143/1‑149 (MQ=255)
                                                                                                               aTCTTACATGCCGGTCCGTATCAGAGATACTTTTTGTGTGGCTTTGCTGGTGATTAAAAATTAAGGCGGGTGTAACGACAAGTTGCAGGCAAAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCtt                                 <  1:2099882/149‑1 (MQ=255)
                                                                                                               aTCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCtt                                 <  1:316021/149‑1 (MQ=255)
                                                                                                               aTCTTACAGGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTTATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCtt                                 <  1:2902675/149‑1 (MQ=255)
                                                                                                                  ttACATGCCGGTCCGTATCAGATATATTTTTTGTTTGGATTTGCTGGTTATTAAAAATTACGGTGGGTGTAACGACAAGTGGCCGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATc                              <  1:3789206/149‑1 (MQ=255)
                                                                                                                   tACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCt                             >  1:4003938/1‑149 (MQ=255)
                                                                                                                    aattGCCGGTCGGTATCTGATATAATTTTGGAGTGGCTTTGCTGGTGTTTAAAAATTAAGGCGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGATGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCtt                            <  1:4143888/146‑1 (MQ=255)
                                                                                                                    aCATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCtt                            >  1:951280/1‑149 (MQ=255)
                                                                                                                     attgcgtgTCCGTATCTGAGATAATTTTTGAGTGGCTTTGGTGGTTATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCttt                           <  2:2247396/142‑1 (MQ=255)
                                                                                                                         ccGGTCCTTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCa                       <  2:1973580/149‑1 (MQ=255)
                                                                                                                         ccGGTCCTTAACATATATAATTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGTGGGTGTAACGACATGTTGCAGGCAAAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCa                       <  1:2457825/149‑1 (MQ=255)
                                                                                                                           ggTCCGTATCATAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATg                     <  2:63221/149‑1 (MQ=255)
                                                                                                                                 tATCAGATATACTTTTTGTGTGGCTTTGCTGGTTATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATGGTAccc               <  2:3046081/149‑1 (MQ=255)
                                                                                                                                     agagATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATGGTACCCGGAg           >  2:3304195/1‑149 (MQ=255)
                                                                                                                                      gagaTACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATGGTACCCGGAGc          >  1:4033953/1‑149 (MQ=255)
                                                                                                                                      gagaTACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATGGTACCCGGAGc          >  1:4245504/1‑149 (MQ=255)
                                                                                                                                       agaTACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATGGTACCCGGAGCg         >  1:811623/1‑149 (MQ=255)
                                                                                                                                           aatttttGAGTGGCTTTGCTGTTTAATAAAAATTAAGGAGGGTTTAACCAAAAGTTGCAGCCAAAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATGGTACCCGGAGCGGGAc     <  1:2260592/147‑1 (MQ=255)
                                                                                                                                             tttttGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATGGTACCCGGAGCGGGACtt   >  2:871381/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
GTGGTCAGTGTTGTATTTGGTCAGAATATCGTCCAGCCATTCCAACTCACTTTCGTTTAACGGTCCCGTTTTCATACGCTTTTCCTTGTGGATCTCAACTCGCCAGCACCTATCTTACATGCCGGTCCGTATCAGAGATACTTTTTGAGTGGCTTTGCTGGTGATTAAAAATTAAGGAGGGTGTAACGACAAGTTGCAGGCACAAAAAAACCACCCGAAGGTGGTTTCACGACACTGCTTATTGCTTTGATTTTATTCTTATCTTTCCCATGGTACCCGGAGCGGGACTTG  >  CP009273/1985026‑1985316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: