| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,709 | A→T | 8.2% | intergenic (‑26/+282) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,709 | 0 | A | T | 8.2% | 502.9 / 2.3 | 171 | intergenic (‑26/+282) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base A (60/93); new base T (11/3); total (75/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.61e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 173 total aligned reads displayed.
CAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGA > CP009273/2170561‑2170857 | cAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGa < 2:1986093/149‑1 (MQ=255) aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAt < 2:4259412/149‑1 (MQ=255) aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAt < 1:3916162/149‑1 (MQ=255) aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAt < 1:3914638/149‑1 (MQ=255) ggTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAtt < 1:2917717/149‑1 (MQ=255) ggTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAtt < 1:844511/149‑1 (MQ=255) gTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAttt < 1:2881053/149‑1 (MQ=255) gTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAttt < 1:680174/149‑1 (MQ=255) gTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTGTTGGAttt > 1:2415618/1‑149 (MQ=255) ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTc < 2:3136857/149‑1 (MQ=255) cAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCaaaa < 2:163367/149‑1 (MQ=255) cAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCaaaa < 1:3814247/149‑1 (MQ=255) gCGGTTTCTACCACCACTTGCATCGTTTCGGGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAat‑a > 2:3918291/1‑149 (MQ=255) gCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAat‑a < 2:2126736/149‑1 (MQ=255) gCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTATATTTAAAAat‑a > 2:150929/1‑149 (MQ=255) tttCTACCACCACTTTCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCATCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AAt < 2:1915855/149‑1 (MQ=255) tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AAt < 2:1917281/149‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGaa < 2:1795577/149‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGaa < 1:3624646/149‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGaaa < 2:2642790/149‑1 (MQ=255) caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGTTTTCAAAAT‑AT‑aattaaatta > 2:1433196/1‑149 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAattat < 2:3445946/149‑1 (MQ=255) accacTTGCATCGTATCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAattat < 2:4027281/149‑1 (MQ=255) ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTAAAAAT‑AT‑aattaaattaat > 1:3812195/1‑147 (MQ=255) ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAattatt < 2:1111951/149‑1 (MQ=255) ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAattatt < 2:2185493/149‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTAttt < 1:861271/149‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTAttt < 1:2777416/149‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTAttt < 1:52481/149‑1 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAA‑AT‑AATTAAAATAttttt > 2:3729156/1‑147 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAAA‑AT‑AATGAAAATAtttttt > 2:2266464/1‑149 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGtttt < 2:1288096/149‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAAT‑AT‑AAATAAATTATtttttttt > 2:4233110/1‑149 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGttttt < 2:1520408/149‑1 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTa < 2:304314/149‑1 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTa < 1:3632154/149‑1 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTa < 1:3631334/149‑1 (MQ=255) tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTTAAAAAT‑AT‑AATTAAAtttttttttttttt > 1:2770285/1‑147 (MQ=255) tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAA‑AT‑AATGAAATTATttttttttta > 2:1757782/1‑147 (MQ=255) tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGAATTAAAAAA‑AT‑AAATAAAATATTTTTTTTTaa > 1:1321112/1‑149 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAA‑AT‑AATTAAAATATTTTTTTTTAAat > 2:4207351/1‑149 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAata < 2:2472401/149‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAata < 1:995618/149‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAata < 1:3311312/149‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGATTTAAAAAA‑AA‑AATTAAAATATtttttttttattt > 1:1154199/1‑144 (MQ=255) ttCGAGATAGAGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAatat < 2:2715123/149‑1 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATc < 1:2381786/149‑1 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTTAAAAAA‑AA‑AATGAAATTATTTTTTTTTAAaaatata > 1:2129074/1‑146 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCgag < 1:2742318/149‑1 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAA‑AA‑AAATAAATTATTTGTTTTTAAATATagag > 2:1340175/1‑149 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTTTTAGTTTTAAAAAA‑AT‑AATGAAATTATTTTTTTTTAAATATagag > 1:651762/1‑149 (MQ=255) aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTGGATTTAAAAAA‑AA‑AAAGAAAATAATTTTTTTTTAATATAgatgt > 2:536784/1‑146 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGa < 1:1701450/149‑1 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGTTTTGAAAAT‑AT‑AATTAAATTATTTTTTTTTTAATATAGAGATAACGa > 1:3126775/1‑149 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 2:3772621/149‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGAt > 2:3241470/1‑149 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATc > 2:1070345/1‑149 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTTTTTTTTAATATAGAGATAAAGAta > 2:1070283/1‑148 (MQ=255) gAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGGTTTTAAAATAAA‑AATGAAA‑AATTTTTTTTTTAATAAAGAGATAAAGATaaa‑aaa > 1:2705798/1‑149 (MQ=255) aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAAT‑AT‑AATGTAATTATTTTTTTTTTAATATAGAGATAAAGATCCC‑aaaaa > 2:3640011/1‑149 (MQ=255) ccGTAACCTCATAACCGCCGCGCTGTGCGTTGTTCAGAATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTAAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGa < 1:1624100/149‑1 (MQ=255) cgtaaCCGAATAACCGCCGCGGGGTGCGTTTTTCAGAATCTGCTTTGTCGATACCACGTAATTTTTAATATCCTGTCGTTTGTTTTCTTTTTAAAAAT‑AT‑AATTAATTTTTTTTTTTTTAAATATCGAGATAACGATCAC‑AAACACGAc < 1:4195801/146‑1 (MQ=255) cGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGAc < 2:1303781/149‑1 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTGTTGGTTTTAAAAAT‑AT‑AAAGAAATTATATTTTTTTTAATATATATATAAAGATAAC‑aaaaaacaaca > 1:2738843/1‑143 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGGGTGTTAGATTTGAAAAT‑AT‑AATGTAATTATTTTTTTTTTAATATGGTGATAACGTTGAC‑AAAAACGACaa > 1:3479040/1‑149 (MQ=255) tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTGGTCGATACCACGTACATTTTCATTTCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGaaaa < 2:2917011/149‑1 (MQ=255) ccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGGGTTTTTGTTTTGAAAAA‑ATAAATAAAATAATTTTTTTTTAAA‑ATATAGATAAATATAAA‑AAAAAAAAAAAAAAGAAAaatatta > 1:3923725/1‑148 (MQ=255) gcgcTGTGCGTTGTTCAGCATCTGCTTTGTCGATCCCCCGTACTTTTTCCTATCCTGTCTTTTGTTTTCGATTTAAAAAT‑AT‑ATTGAATTTATTTTTTTTTAAATATCTAGATAACTAACAC‑AAAAACGACAATATGAAAATTATTCga < 1:2055130/149‑1 (MQ=255) gcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGTTTTCAAAAT‑AT‑AATGAAATTATTTTTTTTTTAATATCGTGATAACGATAAC‑AAAAACGACAAAAGTAAAAGTATTAgagg > 2:4314238/1‑149 (MQ=255) tgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAA‑AT‑AATGAAAATATTTTTTTTTTAATATCGAGTTAACGATCAC‑AAAAAAGACAAAATTAAAAATATTAGAGGAGT‑g > 2:1670629/1‑149 (MQ=255) gttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTTGATTTAAAAAA‑AA‑AAAATAAAAAATTTTTTTTTTATAAATAGATAAAAAAAAC‑AAAAAAAACAAAATAAAAATAATTAAAGGAGT‑ggtattc > 1:2774574/1‑143 (MQ=255) gtacAGCATAGGATTTGTCGACACCCCTAAATTTTTAATATCGGGTGGTTTGTTTTCTATTAAAAAAT‑AA‑AATGAAATTTTTTGTTTTTAAATAGCGATATAACGAAAAA‑AAACACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGc < 1:479899/146‑1 (MQ=255) ctgcttCTGTTTTGTCTATACCACTTAAATTTTAATATCCTGTGTTTTTTTTTCTATTTAAAAAT‑AT‑ATTTAAATTATTTGTTTTTAAATATCGATATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCaaa < 1:2509058/144‑1 (MQ=255) cATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGGTTTGGTTTTGAAAAA‑AT‑AAATCAAATATTTTTTTTTTAATATATAGATAAACAAAAA‑AAAAAAGAAAAAAAAAAAAATAATAGAGGAGT‑GAAACGCaaaaaa > 2:3327670/1‑149 (MQ=255) atcttttttGTCGATACCAATTAATTTTTCATATCCTGTGTTTTTTTTTCTATTAAAAAAT‑AT‑AATTAAATTTTTTTTTTTTAAATATCGATATAACTAACAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCaaaaaaa < 1:1135069/143‑1 (MQ=255) aTCTGTTTTGTCGACACCACTTAATTTTTCATCTCCTGTTTTTTGTTTTATTTTACAAAAT‑AT‑AATTATATTTTTTTTTTTTAAATATCTATTAAACGAACAC‑AAACACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCaaaaaaa < 1:3361913/149‑1 (MQ=255) tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTGAAAAT‑AT‑AATTTAATTATTTTTTTTTAAATATAGAGATAAAGATAAC‑CAAAAAGACAATATGAAAAATATTGTAGGCGT‑GTAAGGCaaaaaaaa > 2:3252045/1‑148 (MQ=255) tttGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAA‑AT‑AATTAAAATATTTTTTTTTTAATATAGAGATAACGAAAAC‑AACAAAAAAAAAAAGAAAATTTTTGGTGGGGT‑GTAAGGCcaaaaaaactcct > 2:776366/1‑143 (MQ=255) tttGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTTAAAAT‑AA‑AATTAAATTTTTTTTTTTTTTATATAGAGATAACGATCACAAAAAAAGAAAAAAT‑AAAAATATTAGAGGAGTGGAAGGGCAAAAAAACgcca > 2:776183/1‑146 (MQ=255) ttGTCGATACCACGAACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATTAAATTATTTTTTTTTAAATATCGCTATAACGATCAC‑AAACACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTc < 2:1374092/149‑1 (MQ=255) ttCGATACCACGAAAATTTTAATATCCTGTCGTTTGTTTTCTATTTAAAAAT‑AT‑AATTAAATTATTTTTTTTTAAATATCTAGATAACTAACAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTccc < 2:899847/148‑1 (MQ=255) gTCTATACCACGTACATTTTCATATCCTGTCTTTTGTTTTCGATTTCAAAAT‑AT‑AATTAAATTATTTTTTTTTAAATATCTAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTccc < 2:651762/149‑1 (MQ=255) gATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTGAAAAT‑AT‑AATTAAAATATTTTTTTTTTAATATAGATATAACAATCAC‑AAAAAAGAAAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAAAGGCCACCCGag > 2:701595/1‑148 (MQ=255) gATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATTAAATTATTTTTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGAt < 2:4415302/149‑1 (MQ=255) gATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTTTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGAt < 2:3254494/149‑1 (MQ=255) tACCCCTTACTTTTTATTATCCTGTCTTTTGTTTTCGATTTAAAAAT‑AT‑ATTGAAATTATTTTTTTTTAAATATCGATATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAg < 2:2616267/149‑1 (MQ=255) tACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAT‑AT‑AATGAAATTATTTTTTTTTAAAAATAGAGATAAACATCAC‑AAAAAAGACAAAATTAAAATTATTCGAGGCGT‑GTAAGGCAAAAAAACGGCCTCCCCATAg > 2:4021648/1‑149 (MQ=255) tACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAAA‑AT‑AAATAAATTATTTTTTTTTTAATATCGTGCTAAAGATAAC‑AAAAACCACAAAATGAAAATAATTAGAGGCGT‑GTAAGGCAATAAAAAAGCCAcccccgag > 2:1863939/1‑144 (MQ=255) tACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTCAAAAT‑AT‑AATGAAAATATTTTTTTTTAAATATAGAGATAACGATAAC‑AAAAAAGACAAAATTAAAATTATTCTAGGCGT‑GTAAGGCAAAAAAAAGGCCTCCCGagag > 2:3849375/1‑149 (MQ=255) aCGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTGAAAAT‑AT‑AATGAAATTATTTTTTTTTTAATATAGAGATAAAGATCAC‑AAAAACGACAATATGTAAAATAATGGAGGTGT‑GTAAGGCAAAAAAAAGGCCTCCCCATTgggta > 2:680810/1‑147 (MQ=255) aCGTACATTTTCATATCCTGTCGTGTGTTTTCGGTTTGAAAAT‑AT‑AATGAAATTATTTTTTTTTTAATATAGAGATAAAGATCAC‑AAAAAAGACAAAATTGAAATTATTAGAGGGGT‑GAAAGGCCCAAATAAGGCCACCCCAGAGGGaa > 2:2882500/1‑149 (MQ=255) cgtaatttttCATCTCCTGTGTTTTGTTTTCGATTTCAAAAT‑AT‑AATTAATTTTTTTTTTTTTAATTATCGATATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAg < 1:1788648/143‑1 (MQ=255) ttaatttttCATATCCTGTCTTTTTTTTTCTTTTTCAAAAT‑AT‑ATTTAATTTTTTTTTTTTTAAATATCGATATAACGATCAA‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc < 1:1763180/144‑1 (MQ=255) gttctttttAATATCGTTTCGTTTTTTTTAGATTAAAAAAT‑AA‑AATTAAATTATTTTTTTTTAAATATCTTGATAACTATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc < 2:1639348/144‑1 (MQ=255) gTACATTTTCATATCCTGTCGTTTTTTTTCTATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACTATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc < 2:723514/149‑1 (MQ=255) tACATGTTCCTCCCCGGTCGTTTGTTTGCGATTTCAAAAT‑CT‑ACTGACATTATTTGTTTTTAACTATCGAGATACCGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGcc < 2:1673506/149‑1 (MQ=255) cATTTTCATATCCGGTCGTTTGTTTTCTATTACAAAAT‑AT‑AATGAATTTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGt < 2:3550617/149‑1 (MQ=255) cATATCCGGTGGTTTGTTTTCGATTTCAAAAT‑AT‑AATTAATTTATTTTTTTTTAATTATCGAGTTAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaaa < 2:2642042/149‑1 (MQ=255) agccTGTCTTTTGTTTTCGATTTCAAAAT‑AT‑AATTAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 2:1258490/147‑1 (MQ=255) tttgtttTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:3469958/1‑149 (MQ=255) | CAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGA > CP009273/2170561‑2170857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |