| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,178,919 | G→T | 6.7% | intergenic (‑139/+84) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,178,919 | 0 | G | T | 6.7% | 484.0 / 4.1 | 166 | intergenic (‑139/+84) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Reads supporting (aligned to +/- strand): ref base G (44/104); new base T (7/11); total (51/115) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 176 total aligned reads displayed.
CGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTC > CP009273/2178771‑2179065 | cGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCgatg < 2:895574/149‑1 (MQ=255) gACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCgatga < 1:1087409/149‑1 (MQ=255) aCTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCgatgat < 2:2116743/149‑1 (MQ=255) aCTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCgatgat < 2:2117160/149‑1 (MQ=255) aCTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCgatgat < 1:201726/149‑1 (MQ=255) aCTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTGCgattat > 1:1804765/1‑149 (MQ=255) ttGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGGTTGGATGATaa > 1:1349406/1‑149 (MQ=255) gCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTCCGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAAt < 2:57614/149‑1 (MQ=255) cATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTCGATGATAAATc > 2:4367465/1‑149 (MQ=255) tAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTGGATGATaaaaaac > 1:4238155/1‑145 (MQ=255) aGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCa < 2:814807/149‑1 (MQ=255) aGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCa < 2:814379/149‑1 (MQ=255) gTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTGCGATGATAAATAGCag > 2:1221992/1‑149 (MQ=255) gTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGGTGCGGGTTTAAATCGCag > 1:2767801/1‑149 (MQ=255) tttGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCaga < 2:4253560/149‑1 (MQ=255) tttGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCaga < 2:4253554/149‑1 (MQ=255) tttGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACGTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCaga < 2:3098030/149‑1 (MQ=255) gCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAgagg‑a < 1:3218453/149‑1 (MQ=255) tCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTGCGCTGATAAATAGCAGagg‑agg > 2:262079/1‑149 (MQ=255) ccTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAgg‑agga < 1:1097128/149‑1 (MQ=255) cTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGAt < 1:1863761/149‑1 (MQ=255) cTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGAt < 2:1722046/149‑1 (MQ=255) gCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATgg < 2:2939631/149‑1 (MQ=255) ccATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGt < 2:124382/149‑1 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATAGCAGAGG‑AGGATGGTAAt > 2:3237079/1‑149 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GGGGGTGCGCTGATAAAAACCCGAGG‑AGGGTGGGAAt > 2:793360/1‑149 (MQ=255) aCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGGTGCGATGATAAAACGCAGAGG‑GGGTTGGTAATGt > 2:2619615/1‑149 (MQ=255) tGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCa < 1:3756635/149‑1 (MQ=255) gaagaaGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTTGGTT‑CGGTGATAAAAAGCAGATG‑AGGGTGGTAAtttgcac > 1:3683306/1‑143 (MQ=255) gaagaaGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAg < 1:3169366/149‑1 (MQ=255) aagaagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAgc < 2:3395631/149‑1 (MQ=255) agaagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTGCGATGTTAAAAAGCAGAGG‑AGGCTGGTAATTTACAgcg > 2:2929566/1‑149 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TGGGGTGCGATGATAAAAAGCAGAGG‑AGGAGGGTAATGTCCAgcgcccccgg > 2:2530587/1‑143 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTCGATGATAAATCGCAGAGG‑AGGATGGTAATTTCCAGCGCACGCGt > 2:3571511/1‑149 (MQ=255) aCCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GGGGTTTGGTTTATAAAAAGCAGATG‑AGGATGGTAATTTCCAGCCCAccccgtgt > 1:2074558/1‑142 (MQ=255) aCCTGGTGGTCCGTGACGTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGt < 1:2295483/149‑1 (MQ=255) tggtggTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 2:4165709/149‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAAc < 1:2522781/149‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCAGAGTCGT‑TTGGTTGCGATGTTAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAAc < 1:75087/149‑1 (MQ=255) tggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGa < 2:2059981/149‑1 (MQ=255) tggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGGTGGGCTTTTAAAACTCAGAGG‑AGGATGGTTAATTGCCCCGCACCCGTTGTTAAAGa > 1:1923241/1‑149 (MQ=255) tCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGa < 1:1979394/149‑1 (MQ=255) tCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGa < 1:1979362/149‑1 (MQ=255) cGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGGTGCGCTTATTAAAATCAGAGG‑AGGTTGGTTATGTCCCGCGCACGCCGTGTAAAAGAGGaat > 1:1316064/1‑148 (MQ=255) tGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGaaaac < 1:3962141/149‑2 (MQ=255) ttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGc < 2:4099471/149‑1 (MQ=255) ttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTCGATGTTAAATAGCAGAGG‑AGGATGGTAATGTCCCCCGCACGCGTTGTAAACGAGGGAAAACGGc > 2:1675182/1‑149 (MQ=255) tCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTGCGATGTTAAAACGCAGAGG‑AGGCTTGTAAATTACCGCGCACGCGTTGTAAACGAGGAAAAACGGCa > 2:2419797/1‑149 (MQ=255) tACGCTGGCAGTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTACTGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGttt < 2:2107124/149‑1 (MQ=255) tGGCATTATCCAGATCTGGTGATACGGGTATTTCTCCGCCTTCACGCAGATGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑TGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACaa < 1:632477/149‑1 (MQ=255) gCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATc < 1:4301250/149‑1 (MQ=255) aTTATCCAGATCCGGTGATACGGGTATTTCTCCGCCTTCACGCAGACGGGCACCCCGTGTCTT‑TTGGTTGCGTTTATAAATCGCAGTGG‑TGGATGGTAATGTCCAGCGCACGCGTTGTAAACGCGTAAAAACGGCAGTTTTACAATcgc < 1:3717992/149‑1 (MQ=255) aTCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGtt < 2:2595886/149‑1 (MQ=255) ccAGATCTGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGACCAGCGCACGCGTTGTAAACGTGCAAACACGGCAGTTTTACAATCGCGTtaa < 1:429751/149‑1 (MQ=255) cAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTtaat < 2:3051977/149‑1 (MQ=255) aGATCAGGTGATACGGTTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTtaata < 1:1695502/149‑1 (MQ=255) aGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTtaata < 1:3913237/149‑1 (MQ=255) aTCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATaaa < 2:1970341/149‑1 (MQ=255) cAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAatt < 1:258319/149‑1 (MQ=255) ggTGATACGGGTATTTCTCAGCCTTCACGCAGACGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAattat < 1:1329506/149‑1 (MQ=255) gATACGGGTATTTCTCAGCCTTCACGCAGAAGGGAACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGTTAATGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTg < 2:2294129/149‑1 (MQ=255) tACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGat < 2:933328/149‑1 (MQ=255) cGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGatat < 2:1959423/149‑1 (MQ=255) gttATTTCTCAGCCTTCACGCAGAAGGGCACCCCGTGTCGT‑TTGGTTGCGATTATAAATCGCAGTGG‑TGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGatatat < 1:1517288/147‑1 (MQ=255) ggTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGatatat < 2:1799568/149‑1 (MQ=255) tATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTGGATGTTAAAAAGCAGAGGTGGGTTGGTAAT‑TCACGCCCCCGCGGTGTTAAACAGGGAAAACAGCAGATTTAAAAAAGCGTTAAAAAATTAATTTttataatt > 1:1788044/1‑146 (MQ=255) tttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGaac < 1:3949171/149‑2 (MQ=255) tttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTGGATGATAAATAGCAGAGG‑AGGATGGTAAATTCAACCGCCCGCGTTGTAAACGAGGAAAAAAGGCAGTTTTTAAATCGCGGTAATAAAATATTTTATATATTaaa > 2:1241262/1‑148 (MQ=255) tctcAGCCTTCACGCATAAGGGCACCCCTTGTGGT‑TTGGTTGCTATTATAAATCGCTGTGG‑TGGTTGTTAATGTCCTGCGCACGCGTTTTAAACGAGTAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 1:2974683/149‑1 (MQ=255) tctcAGCCTTCACGCAGATGGGCACCCCGAGTGTT‑TTGGTTGCTATTATAAATCGCTGAGG‑TGTATGGTAATGTCCAGCGCACGGGTTGTAAACTAGTAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 1:4113653/149‑1 (MQ=255) tctcAGCCTTCACGCAGAAGGGCACCCCGCGTCTT‑TTGGTTGCGATGATAAATCGCTGTGG‑TGGATGGTAATGTCCAGCGCACGCGTTGTAAACGCGTAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 1:2639113/149‑1 (MQ=255) tctcAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCTATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGTGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 2:1349406/149‑1 (MQ=255) tctcAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 2:3742029/149‑1 (MQ=255) cAGCCTTCACTCAGAAGGGCACCCCGAGTCTT‑TTGGTTGCTATTATAAATCGAAGTGG‑AGGATGGTATTGTCCAGCGCACGCTTTTTAAACTAGCAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGc < 1:3358571/149‑1 (MQ=255) aGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCa < 1:999945/149‑1 (MQ=255) ttCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGTGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCtt < 1:3571511/149‑1 (MQ=255) aCGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTCGATTATAAAAAGCAGAGG‑AGGATGGTAATGTCCACCGCACCCGGTTTAAAAGAGGAAAAAACGCAGTTTTAAAAAAGCGGTAAAAAAAAATTTGATATATTAATCCACCACCATCac > 2:1581626/1‑148 (MQ=255) aCGCAGAAGGGCACCCCGAGTCGT‑GTGGGTGCGATGATAAAAAGCAGAGG‑GGGGTGGTTATGTACACCGCACCCGGTGTAAAAAAGGAAAAAACGCAGTTTTTCAATAGCCTTAATAAATTATTTTATATTTGAATACACCACCATCaa > 2:3801860/1‑148 (MQ=255) cGCAGACGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGTTAATGTCCAGCGCACGCGTTTTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGa < 1:3387549/149‑1 (MQ=255) gCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGaa < 2:1324791/149‑1 (MQ=255) aaGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCTGAGG‑TGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGAc < 1:938730/149‑1 (MQ=255) gggCACCCCGAGTCGT‑TTGGTTGCGATTATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACAt < 1:326046/149‑1 (MQ=255) cACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGTATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCa < 1:501764/149‑1 (MQ=255) gtgtt‑ttGGTTGCGATTATAAATCGCTGGGG‑AGGTTGGTATTGTCCAGCGCACGCGTTTTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtcttct < 1:2227649/145‑1 (MQ=255) tCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGTTGGTATTGTCCAGCGCACGCTTTGTAAACGAGTAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATcttctt < 1:2247089/149‑1 (MQ=255) cGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCttcttc < 2:4296649/149‑1 (MQ=255) cGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAAGGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCttcttc < 2:1136471/149‑1 (MQ=255) gT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCa > 2:2519809/1‑149 (MQ=255) t‑ttGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCAc > 1:1553030/1‑149 (MQ=255) tGGTTGCGATTATAAATGGCTGAGG‑AGTATGGTAATGTCCAGCGCACGAGTTGTAATCGAGGAAAAACGGCAGTTTTACAATCGCGTTAATTAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGt < 2:2392308/149‑1 (MQ=255) ggTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtt > 2:4112023/1‑149 (MQ=255) gTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGttt < 1:4367465/149‑1 (MQ=255) ttGCGATTATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtttt < 2:1250887/149‑1 (MQ=255) ttGCGATGATAAATCGCAGAGG‑AGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtttt < 1:562206/149‑1 (MQ=255) ttGCGATGATAAATCGCAGAGG‑AGGATGTTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtttt < 1:562204/149‑1 (MQ=255) ttGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtttt < 2:3821127/149‑1 (MQ=255) gCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAg > 2:255430/1‑149 (MQ=255) gCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAg > 1:3940974/1‑149 (MQ=255) cGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGc < 1:2841301/149‑1 (MQ=255) gatgatAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCt > 1:3420710/1‑149 (MQ=255) | CGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGG‑AGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTC > CP009273/2178771‑2179065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |