| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,178,937 | A→T | 8.5% | intergenic (‑157/+66) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,178,937 | 0 | A | T | 8.5% | 466.4 / 3.5 | 160 | intergenic (‑157/+66) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Reads supporting (aligned to +/- strand): ref base A (37/101); new base T (5/9); total (50/110) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 168 total aligned reads displayed.
CCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATG > CP009273/2178789‑2179084 | ccTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAggagga < 1:1097128/149‑1 (MQ=255) cTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGAt < 2:1722046/149‑1 (MQ=255) cTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGAt < 1:1863761/149‑1 (MQ=255) gCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATgg < 2:2939523/149‑1 (MQ=255) gCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATgg < 2:2939631/149‑1 (MQ=255) ccATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGt < 2:123752/149‑1 (MQ=255) ccATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGt < 2:124371/149‑1 (MQ=255) ccATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGt < 2:124382/149‑1 (MQ=255) cATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCATGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGGTGCGATGATAAAACGCAGAGGAGGATggga > 2:200137/1‑147 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATAGCAGAGGAGGATGGTAAt > 2:3237079/1‑149 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GGGGGTGCGCTGATAAAAACCCGAGGAGGGTGGGAAt > 2:793360/1‑149 (MQ=255) aCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGGTGCGATGATAAAACGCAGAGGGGGTTGGTAATGt > 2:2619615/1‑149 (MQ=255) tGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCa < 1:3756635/149‑1 (MQ=255) tGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTGGATGTTAAATCGCCGAGGTGGTTGGTTATGTGCa > 1:369174/1‑149 (MQ=255) gaagaaGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTTGGTT‑CGGTGATAAAAAGCAGATGAGGGTGGTAAtttgcac > 1:3683306/1‑143 (MQ=255) gaagaaGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAg < 1:3169366/149‑1 (MQ=255) aagaagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAgc < 2:3395631/149‑1 (MQ=255) aagaagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTGCGATTATAAAAAGCAGAGGAGGATGGTAATGtaccgc > 2:326046/1‑144 (MQ=255) agaagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTGGAATTTAAATCTCAGAGGAGGAGGTTAATGTCCAgcg > 2:2588408/1‑149 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTTCGATGTTAAATAGCAGAGGAGGATGGTAATTTACAGCGCAcgcgg > 2:1734135/1‑148 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTGGATGATAAAAAGCAGAGGAGGGTGGGAATGTCCAGCGCCcgccg > 1:651995/1‑147 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTCGATGATAAATCGCAGAGGAGGATGGTAATTTCCAGCGCACGCGt > 2:3571511/1‑149 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTGCGATGATAAATAGCAGAGGAGGATGGTAATGTCCAGCGCACGCGt > 2:2533546/1‑149 (MQ=255) aCCTGGTGGTCCGTGACGTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGt < 1:2295483/149‑1 (MQ=255) tggtggTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 2:4165709/149‑1 (MQ=255) tggtggTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTaaa < 2:4126483/149‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCAGAGTCGT‑TTGGTTGCGATGTTAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAAc < 1:75087/149‑1 (MQ=255) tggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGa < 1:1269513/149‑1 (MQ=255) tggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGa < 2:2059981/149‑1 (MQ=255) tggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGGTGGGCTTTTAAAACTCAGAGGAGGATGGTTAATTGCCCCGCACCCGTTGTTAAAGa > 1:1923241/1‑149 (MQ=255) tCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGa < 1:1979362/149‑1 (MQ=255) tGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGaaaac < 1:3962141/149‑2 (MQ=255) ttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGc < 2:4099471/149‑1 (MQ=255) ttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTCGATGTTAAATAGCAGAGGAGGATGGTAATGTCCCCCGCACGCGTTGTAAACGAGGGAAAACGGc > 2:1675182/1‑149 (MQ=255) tCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTCGATGATAAAAAGCAGAGGAGGATGGTAATTTACAGCGCACGCGTTGTAAACCAGGaaaaaacgca > 2:2419570/1‑144 (MQ=255) tACGCTGGCAGTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTACTGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGttt < 2:2107124/149‑1 (MQ=255) aCGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGATGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGtttt < 1:2111925/149‑1 (MQ=255) tGGCATTATCCAGATCTGGTGATACGGGTATTTCTCCGCCTTCACGCAGATGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGTGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACaa < 1:632477/149‑1 (MQ=255) tGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑GTGGTTTCGGTGTTAAAAAGCAGAGGGTGGTGGTTATGTGCAGCCCCACCGTTTTTAAAGAGGAAAAAAAGCAGTTTTaaaa > 1:2547087/1‑149 (MQ=255) gCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATc < 1:4301250/149‑1 (MQ=255) aTCCAGATCTGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGtt < 2:2595977/149‑1 (MQ=255) ccAGATCTGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGACCAGCGCACGCGTTGTAAACGTGCAAACACGGCAGTTTTACAATCGCGTtaa < 1:429751/149‑1 (MQ=255) cAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTtaat < 2:3051977/149‑1 (MQ=255) aGATCAGGTGATACGGTTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTtaata < 1:1695502/149‑1 (MQ=255) aGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTtaata < 1:1695506/149‑1 (MQ=255) aGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTtaata < 1:3913237/149‑1 (MQ=255) gATCAGGTGATTCGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGTTGGTAATGTCCAGCGCCCGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTtaataa < 1:1317998/149‑1 (MQ=255) tCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAACCGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAat < 1:2929566/149‑1 (MQ=255) tCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAat < 2:2525471/149‑1 (MQ=255) cAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAatt < 1:258319/149‑1 (MQ=255) ggTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGTAAAAACGGCAGTTTTACAATCGCGTTAATAAattat < 1:1329524/149‑1 (MQ=255) gATACGGGTATTTCTCAGCCTTCACGCAGAAGGGAACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGTTAATGTCCAGCGCACGCTTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTg < 2:2294129/149‑1 (MQ=255) tACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGat < 2:933328/149‑1 (MQ=255) cGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGatat < 2:1959423/149‑1 (MQ=255) gttATTTCTCAGCCTTCACGCAGAAGGGCACCCCGTGTCGT‑TTGGTTGCGATTATAAATCGCAGTGGTGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGatatat < 1:1517288/147‑1 (MQ=255) gTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATg < 2:2849714/149‑1 (MQ=255) tttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGTGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAAt < 1:3948408/149‑1 (MQ=255) tctcAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATcc < 1:4033683/149‑1 (MQ=255) cAGCCTTCACTCAGAAGGGCACCCCGAGTCTT‑TTGGTTGCTATTATAAATCGAAGTGGAGGATGGTATTGTCCAGCGCACGCTTTTTAAACTAGCAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGc < 1:3358571/149‑1 (MQ=255) cAGCCTTCACGCAGAAGGGCACCCCGTGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGc < 1:2009864/149‑1 (MQ=255) aaGCTTTCACGCTGAAGGTCACCCCGAGTCTT‑TTGGTTGCGTTTATATATCGCAGTGGTGTTGGTTATTGTCAAGGTCAGTCGTTTTAAACGATTAAAAACTTCATTTTTTCAATCGCGTTAATAAATTATTTGATATATGAATCCAGc < 1:2831715/148‑1 (MQ=255) aGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCa < 1:999945/149‑1 (MQ=255) ttCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGTGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCtt < 1:3571511/149‑1 (MQ=255) aCGCAGAAGGGCACCCCGAGTCGT‑GTGGGTGCGATGATAAAAAGCAGAGGGGGGTGGTTATGTACACCGCACCCGGTGTAAAAAAGGAAAAAACGCAGTTTTTCAATAGCCTTAATAAATTATTTTATATTTGAATACACCACCATCaa > 2:3801860/1‑148 (MQ=255) cGCAGACGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGTTAATGTCCAGCGCACGCGTTTTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGa < 1:3387549/149‑1 (MQ=255) gCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGaa < 2:1324791/149‑1 (MQ=255) aGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACg < 2:1347008/149‑1 (MQ=255) aaGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCTGAGGTGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGAc < 1:938730/149‑1 (MQ=255) gggCACCCCGAGTCGT‑TTGGTTGCGATTATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACAt < 1:326046/149‑1 (MQ=255) cACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGTATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCa < 1:501764/149‑1 (MQ=255) cACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCa < 2:2368691/149‑1 (MQ=255) ccGAGTCGT‑TTGGTTGCGATGATAAATCGCAGTGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtc < 1:2432773/149‑1 (MQ=255) tCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGTTGGTATTGTCCAGCGCACGCTTTGTAAACGAGTAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATcttctt < 1:2247089/149‑1 (MQ=255) cGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCttcttc < 2:4296649/149‑1 (MQ=255) cGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAAGGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCttcttc < 2:1136471/149‑1 (MQ=255) gT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCa > 2:2519809/1‑149 (MQ=255) t‑ttGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCAc > 1:1553030/1‑149 (MQ=255) t‑ttGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCAc > 1:2064204/1‑149 (MQ=255) gTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGttt < 1:4367465/149‑1 (MQ=255) ttGCGATGATAAATCGCAGAGGAGGTTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtttt < 1:562206/149‑1 (MQ=255) ttGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtttt < 2:3821127/149‑1 (MQ=255) gCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAg > 1:3940285/1‑149 (MQ=255) gatgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCt > 1:3420710/1‑149 (MQ=255) atgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTc > 1:2735636/1‑149 (MQ=255) atgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTc > 1:534794/1‑149 (MQ=255) aaTCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATcccc > 1:2684911/1‑149 (MQ=255) cAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGt < 2:591160/149‑1 (MQ=255) cAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGt < 2:382077/149‑1 (MQ=255) agagGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTg < 2:1498953/149‑1 (MQ=255) agagGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTg < 2:1498869/149‑1 (MQ=255) agagGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTg < 2:1268610/149‑1 (MQ=255) gaggagGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACACTCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGa > 2:1401988/1‑149 (MQ=255) gaggagGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGa > 1:1831598/1‑149 (MQ=255) ggaggaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAAc > 2:4403191/1‑149 (MQ=255) ggaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGAt > 2:4407282/1‑149 (MQ=255) ggaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGAt > 2:802709/1‑149 (MQ=255) gaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGAtg < 2:89244/149‑1 (MQ=255) gaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGAtg < 2:3523606/149‑1 (MQ=255) gaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGAtg < 1:3272171/149‑1 (MQ=255) gaTGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGAtg > 1:4267537/1‑149 (MQ=255) | CCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGT‑TTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATG > CP009273/2178789‑2179084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |