Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,400,223 A→C 7.9% intergenic (‑103/‑817) lrhA ← / → alaA transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,400,2230AC 7.9% 571.8 / 7.9 196intergenic (‑103/‑817)lrhA/alaAtranscriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2
Reads supporting (aligned to +/- strand):  ref base A (102/73);  new base C (5/16);  total (107/89)
Fisher's exact test for biased strand distribution p-value = 4.40e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 199 total aligned reads displayed.

GCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCG  >  CP009273/2400075‑2400371
                                                                                                                                                     |                                                                                                                                                    
gcagATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATGTGTAATGTGCCTCCCTGGCAGTTTCATCCGGaa                                                                                                                                                      >  1:1410281/1‑149 (MQ=255)
 cagATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAAc                                                                                                                                                     <  1:33343/149‑1 (MQ=255)
  agATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAAcc                                                                                                                                                    <  2:3407264/149‑1 (MQ=255)
   gATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAAccc                                                                                                                                                   <  2:2040586/149‑1 (MQ=255)
     tcgaggtcgaggTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCgg                                                                                                                                                 <  2:1949740/149‑1 (MQ=255)
      cgaggtcgaggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGa                                                                                                                                                <  2:231667/149‑1 (MQ=255)
       gaggtcgaggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGAc                                                                                                                                               >  2:2343868/1‑149 (MQ=255)
        aggtcgaggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACg                                                                                                                                              >  1:800235/1‑149 (MQ=255)
              aggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTa                                                                                                                                        >  2:3879950/1‑149 (MQ=255)
               ggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTaa                                                                                                                                       <  1:677469/149‑1 (MQ=255)
                  tAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTaaaaa                                                                                                                                    <  2:1893664/149‑1 (MQ=255)
                  tAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTaaaaa                                                                                                                                    >  2:138142/1‑149 (MQ=255)
                    aTTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGACCCCGGACGAAAGTAAAAATg                                                                                                                                  >  2:4238006/1‑149 (MQ=255)
                         cGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCatat                                                                                                                             <  1:1920071/149‑1 (MQ=255)
                          ggACGATTTGCACTTATCATATATTATCACTTTCTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAGTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATg                                                                                                                            <  2:2127420/149‑1 (MQ=255)
                          ggACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCACTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATg                                                                                                                            >  2:990762/1‑149 (MQ=255)
                          ggACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGACCCCGGACGAAAGTAAAAATGCATATg                                                                                                                            >  2:3210753/1‑149 (MQ=255)
                          ggACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATg                                                                                                                            >  2:3674531/1‑149 (MQ=255)
                          ggACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATg                                                                                                                            >  1:3825786/1‑149 (MQ=255)
                           gACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGa                                                                                                                           >  1:4376325/1‑149 (MQ=255)
                           gACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGa                                                                                                                           >  2:2184638/1‑149 (MQ=255)
                            aCGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAg                                                                                                                          >  2:232454/1‑149 (MQ=255)
                             cGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGt                                                                                                                         >  1:1233720/1‑149 (MQ=255)
                             cGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGt                                                                                                                         <  1:1715282/149‑1 (MQ=255)
                             cGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGt                                                                                                                         <  1:4310885/149‑1 (MQ=255)
                             cGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGt                                                                                                                         >  1:1234935/1‑149 (MQ=255)
                              gATTTGCACTTATCATATATTATCCCTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGtt                                                                                                                        <  2:355770/149‑1 (MQ=255)
                               aTTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTg                                                                                                                       >  2:2831500/1‑149 (MQ=255)
                                 ttGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCa                                                                                                                     >  2:783656/1‑149 (MQ=255)
                                  tGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCAc                                                                                                                    >  1:796362/1‑149 (MQ=255)
                                     aCTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaa                                                                                                                 <  1:2367647/149‑1 (MQ=255)
                                        tATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaaaaa                                                                                                              >  2:798626/1‑149 (MQ=255)
                                          tCATATATTATCACTTACTGGCGGATCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTATAAAAg                                                                                                            <  2:3457402/149‑1 (MQ=255)
                                             tatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTTTGCATACACAAACAAGCAATTCCATTTTTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGa                                                                                                         <  1:562525/149‑1 (MQ=255)
                                               tattatCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACACACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACt                                                                                                       >  1:2474691/1‑149 (MQ=255)
                                                     cACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACAtt                                                                                                 >  1:357157/1‑149 (MQ=255)
                                                      aCTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTg                                                                                                >  2:1206468/1‑149 (MQ=255)
                                                       cTTAGTGGCGGCTCATAGTGTGCTGTTTAATGCTGTGCACACACAAACAAGCAATTCAATTTTTATTGTGCCTCCCTGGCTGTTACATCGGGAACCCGTACTAAAGTAAAATTGCTTTTGTGTTGAACTAAAAAAGCGACTCACATTGt                                                                                               <  2:1165985/149‑1 (MQ=255)
                                                       cTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGt                                                                                               >  1:669540/1‑149 (MQ=255)
                                                        ttACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGtt                                                                                              >  1:1447410/1‑149 (MQ=255)
                                                        ttACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGtt                                                                                              >  2:201458/1‑149 (MQ=255)
                                                        ttACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGtt                                                                                              >  1:2929476/1‑149 (MQ=255)
                                                         tACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTc                                                                                             >  2:46045/1‑149 (MQ=255)
                                                          aCTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACCAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTcc                                                                                            >  2:2579873/1‑149 (MQ=255)
                                                             ggcggcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGAGACTCACATTGTTCAGtt                                                                                         >  2:3716861/1‑149 (MQ=255)
                                                              gcggcTCATACTGCGCTGTTTAATGCTGTGCACACAAAACCAAGAAATTCCTTTTGTATTGTGCCTCCCTGGCTTTTTCATCCGGAACCCGGACTAAATTAAAAAGGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTta                                                                                        <  2:3116347/149‑1 (MQ=255)
                                                                 gcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATaa                                                                                     >  2:617025/1‑149 (MQ=255)
                                                                  cTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAAt                                                                                    >  2:2741516/1‑149 (MQ=255)
                                                                        ctgtggtGGTTAGTGCTGGCCACACACAAACATGAATTGCATTTTGTATTGGGCCTCCCTGGCTTTTTCAGCCGGAACCCGGACTAAATTAAAAATGCTTTTTAGTTGCAATAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa                                                                              <  2:895293/143‑1 (MQ=255)
                                                                        cTGAGCTGGTTATTGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa                                                                              <  2:2521310/149‑1 (MQ=255)
                                                                           aGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACAGTGTTCCGTTATAATGCCTGAAGt                                                                           >  2:798482/1‑149 (MQ=255)
                                                                                   aaTGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGACCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATcaca                                                                   >  1:670861/1‑149 (MQ=255)
                                                                                         gtgCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat                                                             >  2:32725/1‑149 (MQ=255)
                                                                                            cacacacaAACAAGAAATTCAATTTGTAATGTGCCTCCCTGGCTGTTTCATCCGGAACCCGGACGAAATTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATc                                                          <  2:712987/149‑1 (MQ=255)
                                                                                             acacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt                                                         >  2:2198513/1‑149 (MQ=255)
                                                                                             acacacaAACAAGAAATTCCATTTGTATTGTGCCTCCCTGGTTGTTTCATCCGCAACCCGGACGAATGAAAAAATGAATATGTTTTGCAATAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt                                                         <  1:1353617/149‑1 (MQ=255)
                                                                                                 acaaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg                                                     >  1:1465139/1‑149 (MQ=255)
                                                                                                  aaaacaaTCATTTCTATTTTTATTGGGCCCCCCTGGCTTTTTCATCCGCAACCCGGACTAAATTAAAATTGAATTTGAGTTTCAAAAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg                                                    <  2:3712532/148‑1 (MQ=255)
                                                                                                   aaacacGCAATTCCATTTGTACTGTGCCTCCCTGGCAGTTTCATCCGGACCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg                                                   <  2:4021659/149‑1 (MQ=255)
                                                                                                        atcAATTCCATTTTTAATGGCCCTCCCTGTCAGTTACATCCGGAACCCGTAAGAAATTAAAAATGAATATGTTTTGCAATAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGc                                              <  2:4142482/147‑1 (MQ=255)
                                                                                                        acaaaTTCATTTTTTAATGTGCCCCCGGGGCTTTTACATCCGGACCCGGTACGAAATAAAAATTGCATATGCTTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGc                                              <  1:1423824/146‑1 (MQ=255)
                                                                                                          cAATTCCTTTTGTACTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAAGGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCat                                            <  2:3530756/149‑1 (MQ=255)
                                                                                                          cAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCat                                            >  1:2259582/1‑149 (MQ=255)
                                                                                                             ttCCTTTTGTAATGTGCCTCCCTGGCTGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGACTATATCTTCAGGGATCGCATATc                                         <  2:2162655/149‑1 (MQ=255)
                                                                                                             ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATc                                         >  2:3533668/1‑149 (MQ=255)
                                                                                                                 attttGTATTGGGCCGCCCGGGCATTTACATCCGCACCCCGGACTAAATAAAAAATGCATATGTGTTGCAAAAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAt                                      <  1:1690184/147‑1 (MQ=255)
                                                                                                                 aTTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAtt                                     <  2:1690507/149‑1 (MQ=255)
                                                                                                                   ttttTATTGTGCCGCCGGGTCTGTTTCATCCTGAACCCGGACTAAATTAAAAATGAATTTGATTTGCAATAAAACCGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTa                                    <  1:2006892/149‑1 (MQ=255)
                                                                                                                   tttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTa                                    <  2:2904636/149‑1 (MQ=255)
                                                                                                                    ttttAATGTGCCTCCCGGGCAGTTTCATCCGGAACCGGCACTAATTAAAAATTGCATTTGATTTGCAAAAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTaa                                   <  1:2907677/146‑1 (MQ=255)
                                                                                                                    ttGTAAGGTGCCTCCCTGGCTGTTTCATCCGCAACCCGGACGAAAGTAAAAATGCATATGAGTTGCAATAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTaa                                   <  1:2909685/149‑1 (MQ=255)
                                                                                                                       tAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGtt                                >  2:1007817/1‑149 (MQ=255)
                                                                                                                         aTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTac                              >  2:75317/1‑149 (MQ=255)
                                                                                                                             gCCTCCCTGGCTGTTTCATCCGGAACCCGGACGAAATTAAAAATGCATATGAGTTGAACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcac                          <  2:250690/149‑1 (MQ=255)
                                                                                                                              ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcact                         >  2:708582/1‑149 (MQ=255)
                                                                                                                                tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCActct                       >  1:1984564/1‑149 (MQ=255)
                                                                                                                                   cTGGCTTTTACAACCGAAACCCGCAATAAATTAAAAATGAATATGTTTTCAAAAAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtttt                    <  1:1935129/149‑1 (MQ=255)
                                                                                                                                   cTGGCTGTTTCATCCGGACCCCGGACGACAGTAAACATGCATAGGCGTTGCACTAAAACAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGACTATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtttt                    <  2:3986834/149‑1 (MQ=255)
                                                                                                                                    tggctttttCATCCGCACCCCGGATGAATTTAAAATTGAATTTGTTTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTc                   <  1:2184597/143‑1 (MQ=255)
                                                                                                                                    tGGCATTTTCATCCGGAACCCGGACGAAATTAAAAATGCATTTGTTTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTc                   <  1:2185281/149‑1 (MQ=255)
                                                                                                                                     tgctttttAATCCGTAACCCTGACTAAATTAAAATTGCATATGTTTTGAAAAAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCt                  <  2:1889318/144‑1 (MQ=255)
                                                                                                                                     ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCt                  <  2:1298500/149‑1 (MQ=255)
                                                                                                                                     ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCt                  >  1:2303366/1‑149 (MQ=255)
                                                                                                                                     ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCt                  >  1:2067466/1‑149 (MQ=255)
                                                                                                                                      gCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTa                 >  1:1310695/1‑149 (MQ=255)
                                                                                                                                       ctgTTTCAGCCGTAACCGGTACTAAATTAAAATTGATTTTGTTTTGCAATAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAt                <  1:4053303/147‑1 (MQ=255)
                                                                                                                                        aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGACTATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTGTTCTagt               >  1:376289/1‑147 (MQ=255)
                                                                                                                                        aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAtt               >  1:2579866/1‑149 (MQ=255)
                                                                                                                                        aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAtt               >  1:3114686/1‑149 (MQ=255)
                                                                                                                                          tttCATCCGGAACCCGGACTAATTTAAAATTGCTTTTGTGTTGCACTAAAACAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTa             <  2:3769594/149‑1 (MQ=255)
                                                                                                                                          tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTa             >  2:2527218/1‑149 (MQ=255)
                                                                                                                                          tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTa             >  2:1647820/1‑149 (MQ=255)
                                                                                                                                           ttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTAt            >  1:4228201/1‑149 (MQ=255)
                                                                                                                                           ttCACCCGCACCCGGTACTAAATTAAAAATGCTTATTTGTTCAACTAAAAACGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTAt            <  1:843978/149‑1 (MQ=255)
                                                                                                                                             cATCCGTAACCCGGACTAAATTAAAATTGCATATTTGTTGAAATAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGa          <  2:831748/149‑1 (MQ=255)
                                                                                                                                               tCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACa        >  1:4590/1‑149 (MQ=255)
                                                                                                                                                ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACAt       >  2:232665/1‑149 (MQ=255)
                                                                                                                                                ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACAt       >  2:2433315/1‑149 (MQ=255)
                                                                                                                                                  ggAACCCGGACGAATGTAAAAATGCATATGTGTTGCAGTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgc     <  2:2418277/149‑1 (MQ=255)
                                                                                                                                                  ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgc     >  2:2618503/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCG  >  CP009273/2400075‑2400371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: